View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_27 (Length: 565)
Name: NF1740_low_27
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_27 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 10 - 565
Target Start/End: Complemental strand, 22878329 - 22877777
Alignment:
| Q |
10 |
tagcataggcacatcatataaaataaaacaaaagagcgaataacctatttcagtctaaaaatagtattggtcacgacatcgtgcaatttagcccctaaaa |
109 |
Q |
| |
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||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22878329 |
tagcacaggcacatcatacaacataaaacaaaagagcgaataacctatttcagtctaaaaatagtattggtcacgacatcgtgcaatttagcccctaaaa |
22878230 |
T |
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| Q |
110 |
ttaacatattctaaaatgatccttgaaatcgaaaattttcaatcacattagtctcttcaagacagtttcaaggactatattgaccaacccaaaaggacta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22878229 |
ttaacatattctaaaatgatccttgaaatcgaaaattttcaatcacattagtctcttcaagacagtttcaaggactatattgaccaacccaaaaggacta |
22878130 |
T |
|
| Q |
210 |
acgttaaaaatttcaacccctataattttatagacttaaacggcgattcactctaaatgaaatataacatttattgagccatatctgaaatgcacttggc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22878129 |
acgttaaaaatttcaacccctataattttatagacttaaacggcgattcactctaaatgaaatataacatttattgagccatatctgaaatgcacttggc |
22878030 |
T |
|
| Q |
310 |
tctaaagaatgcctcagtgcatgtaaaacaattgaagcaacctacttaagcctttcttccatagttgctctaattgttaccagttgataaacacaccatt |
409 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22878029 |
tctaaagaatgccttattgcatgtaaaacaattgaagcaacctactt---cctttcttccatagttgctctaattgttaccagttgataaacacaccatt |
22877933 |
T |
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| Q |
410 |
catgaaacagaagttctactcgatctaagcaaatcattttattcaagcattcattgtgaaatgcagaattatcaccagtcaatgacacaatgaaccaatc |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22877932 |
catgaaacagaagttctactcgatctaagcaaatcattttattcaagcattcattgtgaaatgcagaattatcacccgtcaatgacacaatgaaccaatc |
22877833 |
T |
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| Q |
510 |
attgatcgtagaggatcgaagagttcatcatacctatagctagagccaatatgtca |
565 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22877832 |
attgatcgtagaggatcgaagagttcatcatacctatagcgagagccaatatgtca |
22877777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 342
Target Start/End: Complemental strand, 22812716 - 22812384
Alignment:
| Q |
10 |
tagcataggcacatcatataaaataaaacaaaagagcgaataacctatttcagtctaaaaatagtattggtcacgacatcgtgcaatttagcccctaaaa |
109 |
Q |
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||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22812716 |
tagcacaggcacatcatataacataaaacgaaagagcgaataacctatttcagtctaaaaatagtattggtcacgacatcgtgcaatttagcccctaaaa |
22812617 |
T |
|
| Q |
110 |
ttaacatattctaaaatgatccttgaaatcgaaaattttcaatcacattagtctcttcaagacagtttcaaggactatattgaccaacccaaaaggacta |
209 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |
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| T |
22812616 |
ttaacatattctaaaatgatcattgaaattgaaaattttcaatcacattagtctcttcaagacaatttcaaggactatatcgaccgacccaaaaggacta |
22812517 |
T |
|
| Q |
210 |
acgttaaaaatttcaacccctataattttatagacttaaacggcgattcactctaaatgaaatataacatttattgagccatatctgaaatgcacttggc |
309 |
Q |
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|| ||| |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22812516 |
acattacaaatttcaacccctgtaattttatagacttaaatggtgattcactctaaatgaaatataacatttattgagccatatctgaaatgcagttggc |
22812417 |
T |
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| Q |
310 |
tctaaagaatgcctcagtgcatgtaaaacaatt |
342 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
22812416 |
tctaaagaatgccttagtgcatgtaaaacaatt |
22812384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 22896085 - 22895751
Alignment:
| Q |
10 |
tagcataggcacatcatataaaataaaacaaaagagcgaataacctatttcagtctaaaaatagtattggtcacgacatcgtgcaatttagcccctaaaa |
109 |
Q |
| |
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|||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| |||||||||||| |
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| T |
22896085 |
tagcatagacacatcaaataacataaaacgaaagagcgaataacctatttcagtcttataatagtattggtcacgacatcatgcaatctagcccctaaaa |
22895986 |
T |
|
| Q |
110 |
ttaacatattctaaaatgatccttgaaatcgaaaattttcaatcacattagtctcttcaagacagtttcaaggactatattgaccaacccaaaaggacta |
209 |
Q |
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||||||||||||||||||||| ||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
22895985 |
ttaacatattctaaaatgatcattgaaattgaaaattttcaatcactttagtatcttcaagacaatttcaaggactatattgaccgacccaaaaggacta |
22895886 |
T |
|
| Q |
210 |
acgttaaaaatttcaacccctataattttatagacttaaacggcgattcactctaaatgaaatataacatttattgagccatatctgaaatgcacttggc |
309 |
Q |
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|| |||||||||||||||||| ||| |||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22895885 |
acattaaaaatttcaacccctgtaa-tttatagacttaaatggtgattcagtctaaatcaaatataacatttattgagccatatctgaaatgcacttgat |
22895787 |
T |
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| Q |
310 |
tctaaagaatgcctcagtgcatgtaaaacaattgaa |
345 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
22895786 |
tctaaagaatgcctcagtgcatgtaaaacaattgaa |
22895751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 353 - 565
Target Start/End: Complemental strand, 22812352 - 22812140
Alignment:
| Q |
353 |
acttaagcctttcttccatagttgctctaattgttaccagttgataaacacaccattcatgaaacagaagttctactcgatctaagcaaatcattttatt |
452 |
Q |
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|||||||||||||||| |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |
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| T |
22812352 |
acttaagcctttcttctatagttgcaataactgttaccagttgatgaacacaccattcatgaaacagaagttctgctcgatttaaacaaatcattttatt |
22812253 |
T |
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| Q |
453 |
caagcattcattgtgaaatgcagaattatcaccagtcaatgacacaatgaaccaatcattgatcgtagaggatcgaagagttcatcatacctatagctag |
552 |
Q |
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| | |||| ||||||| |||||||||||||||| || ||||||||||| |||||||||||||| || ||||||| |||||||||||||||||||||| || |
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| T |
22812252 |
ccaacattgattgtgacatgcagaattatcacccgtgaatgacacaataaaccaatcattgattgtggaggatcaaagagttcatcatacctatagcaag |
22812153 |
T |
|
| Q |
553 |
agccaatatgtca |
565 |
Q |
| |
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||||||||||||| |
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| T |
22812152 |
agccaatatgtca |
22812140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 353 - 565
Target Start/End: Complemental strand, 22895722 - 22895510
Alignment:
| Q |
353 |
acttaagcctttcttccatagttgctctaattgttaccagttgataaacacaccattcatgaaacagaagttctactcgatctaagcaaatcattttatt |
452 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| |||| |||||||| |
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| T |
22895722 |
acttaagcctttcttctatagttgctataattgttaccagttgatgaacacaccattcatgaaacagaagttttactcgatttaaacaaaccattttatc |
22895623 |
T |
|
| Q |
453 |
caagcattcattgtgaaatgcagaattatcaccagtcaatgacacaatgaaccaatcattgatcgtagaggatcgaagagttcatcatacctatagctag |
552 |
Q |
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| | |||||||||||| || ||||||||||||| || ||||||||||| |||||||||||||| |||||||||| |||||| ||||||||||||||| || |
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| T |
22895622 |
ccaacattcattgtgacatccagaattatcacccgtgaatgacacaataaaccaatcattgattgtagaggatcaaagagtccatcatacctatagcaag |
22895523 |
T |
|
| Q |
553 |
agccaatatgtca |
565 |
Q |
| |
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||||||||||||| |
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| T |
22895522 |
agccaatatgtca |
22895510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 22871771 - 22871717
Alignment:
| Q |
67 |
aaaatagtattggtcacgacatcgtgcaatttagcccctaaaattaacatattct |
121 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22871771 |
aaaatagtattggtcacgatgtcgtgcaatttagcccctaaaattaacatattct |
22871717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 565
Target Start/End: Complemental strand, 22842266 - 22842233
Alignment:
| Q |
532 |
gttcatcatacctatagctagagccaatatgtca |
565 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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| T |
22842266 |
gttcatcatacctatagcgagagccaatatgtca |
22842233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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