View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_29 (Length: 548)

Name: NF1740_low_29
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_29
NF1740_low_29
[»] chr2 (24 HSPs)
chr2 (6-374)||(38066801-38067153)
chr2 (176-374)||(38042612-38042806)
chr2 (260-374)||(38044678-38044793)
chr2 (252-374)||(38028051-38028166)
chr2 (439-534)||(38028209-38028304)
chr2 (439-534)||(38042849-38042944)
chr2 (439-534)||(38044836-38044931)
chr2 (439-534)||(38067196-38067291)
chr2 (458-534)||(38019154-38019230)
chr2 (9-126)||(5507321-5507439)
chr2 (1-116)||(34517016-34517132)
chr2 (1-112)||(25217913-25218025)
chr2 (3-66)||(39447128-39447191)
chr2 (1-66)||(44465851-44465916)
chr2 (1-116)||(36949068-36949184)
chr2 (1-66)||(17474922-17474987)
chr2 (1-98)||(33452566-33452664)
chr2 (1-98)||(45153914-45154012)
chr2 (1-63)||(41510551-41510613)
chr2 (1-46)||(4268361-4268406)
chr2 (1-66)||(9847548-9847613)
chr2 (1-126)||(25715268-25715396)
chr2 (2-31)||(38308918-38308947)
chr2 (1-37)||(2764506-2764542)
[»] chr4 (27 HSPs)
chr4 (7-131)||(3703384-3703509)
chr4 (7-126)||(49396921-49397041)
chr4 (5-125)||(38416479-38416600)
chr4 (1-126)||(6228939-6229065)
chr4 (11-126)||(6003811-6003927)
chr4 (5-112)||(25539080-25539188)
chr4 (1-103)||(23523842-23523945)
chr4 (1-117)||(32441733-32441850)
chr4 (4-112)||(55052750-55052859)
chr4 (4-110)||(38536099-38536206)
chr4 (1-98)||(25491523-25491621)
chr4 (1-66)||(7931632-7931697)
chr4 (1-66)||(48319193-48319257)
chr4 (7-78)||(49002934-49003006)
chr4 (1-63)||(46440402-46440464)
chr4 (1-63)||(50392537-50392599)
chr4 (1-109)||(53894119-53894228)
chr4 (3-63)||(25752574-25752634)
chr4 (9-109)||(29822550-29822650)
chr4 (2-37)||(8106395-8106430)
chr4 (1-98)||(19835461-19835559)
chr4 (1-42)||(5865209-5865250)
chr4 (1-62)||(17933265-17933326)
chr4 (6-59)||(40703645-40703698)
chr4 (9-50)||(41323234-41323275)
chr4 (1-62)||(54631591-54631652)
chr4 (43-126)||(34972787-34972871)
[»] chr5 (26 HSPs)
chr5 (1-116)||(27212585-27212701)
chr5 (1-126)||(33487478-33487603)
chr5 (1-126)||(37095043-37095167)
chr5 (1-109)||(6156615-6156724)
chr5 (1-109)||(15799109-15799218)
chr5 (5-108)||(20891497-20891602)
chr5 (1-112)||(25746908-25747018)
chr5 (1-98)||(38692910-38693009)
chr5 (4-66)||(12465237-12465299)
chr5 (1-126)||(26190426-26190552)
chr5 (1-63)||(38871602-38871664)
chr5 (4-112)||(4064851-4064960)
chr5 (5-66)||(40620122-40620183)
chr5 (4-66)||(38372237-38372299)
chr5 (4-97)||(39524672-39524766)
chr5 (1-37)||(11186304-11186340)
chr5 (3-98)||(28083508-28083604)
chr5 (2-50)||(32842101-32842149)
chr5 (3-62)||(31929236-31929295)
chr5 (43-117)||(34440620-34440695)
chr5 (4-42)||(14001635-14001673)
chr5 (4-65)||(34529954-34530018)
chr5 (1-62)||(36359714-36359775)
chr5 (6-42)||(8739326-8739362)
chr5 (12-111)||(26319000-26319100)
chr5 (3-63)||(43388199-43388259)
[»] chr7 (19 HSPs)
chr7 (1-126)||(47202399-47202525)
chr7 (1-66)||(43737090-43737155)
chr7 (4-98)||(37518426-37518521)
chr7 (1-98)||(3936041-3936139)
chr7 (1-63)||(28230596-28230658)
chr7 (16-111)||(28349227-28349323)
chr7 (1-98)||(19225726-19225825)
chr7 (3-109)||(42925771-42925878)
chr7 (1-55)||(8154876-8154930)
chr7 (6-131)||(28346048-28346173)
chr7 (1-112)||(24042316-24042428)
chr7 (3-66)||(9151780-9151843)
chr7 (7-42)||(43185784-43185819)
chr7 (4-66)||(36468667-36468729)
chr7 (2-63)||(36408340-36408401)
chr7 (1-66)||(36629171-36629236)
chr7 (5-42)||(37218237-37218274)
chr7 (11-110)||(3304897-3304997)
chr7 (6-117)||(31642955-31643067)
[»] chr1 (23 HSPs)
chr1 (1-126)||(23442643-23442769)
chr1 (11-103)||(6223876-6223969)
chr1 (2-67)||(52744946-52745011)
chr1 (1-66)||(44573224-44573289)
chr1 (3-126)||(27794760-27794883)
chr1 (1-126)||(33611538-33611664)
chr1 (4-103)||(40908065-40908165)
chr1 (7-109)||(15069976-15070079)
chr1 (4-63)||(40650806-40650865)
chr1 (5-64)||(45046982-45047041)
chr1 (4-112)||(34162852-34162962)
chr1 (1-125)||(49786175-49786300)
chr1 (2-63)||(45568005-45568066)
chr1 (3-98)||(32817741-32817837)
chr1 (1-126)||(18583672-18583798)
chr1 (1-62)||(42545937-42545998)
chr1 (1-66)||(43319324-43319389)
chr1 (6-37)||(24472963-24472994)
chr1 (4-42)||(890498-890536)
chr1 (4-50)||(26723614-26723660)
chr1 (11-62)||(7011178-7011230)
chr1 (43-126)||(24471474-24471558)
chr1 (43-126)||(30829625-30829709)
[»] chr3 (24 HSPs)
chr3 (4-112)||(50716171-50716280)
chr3 (4-112)||(50796567-50796676)
chr3 (9-126)||(49096363-49096480)
chr3 (3-66)||(47123072-47123135)
chr3 (3-66)||(47130438-47130501)
chr3 (1-126)||(51258308-51258433)
chr3 (1-66)||(33438488-33438553)
chr3 (1-66)||(34821524-34821589)
chr3 (6-126)||(48303896-48304017)
chr3 (3-125)||(30721939-30722063)
chr3 (1-126)||(3937293-3937419)
chr3 (1-109)||(3902934-3903043)
chr3 (1-65)||(45244356-45244420)
chr3 (1-98)||(47740060-47740158)
chr3 (1-63)||(51540742-51540804)
chr3 (1-125)||(28872910-28873034)
chr3 (1-66)||(38977876-38977941)
chr3 (42-117)||(42936583-42936659)
chr3 (7-65)||(46622918-46622977)
chr3 (1-46)||(501269-501314)
chr3 (11-103)||(2358761-2358854)
chr3 (6-47)||(42936685-42936726)
chr3 (9-42)||(51492814-51492847)
chr3 (78-126)||(43473155-43473203)
[»] chr6 (12 HSPs)
chr6 (1-112)||(5699477-5699589)
chr6 (4-126)||(24604493-24604617)
chr6 (1-118)||(32035026-32035144)
chr6 (1-66)||(1945657-1945722)
chr6 (1-66)||(14587688-14587753)
chr6 (1-66)||(17264376-17264441)
chr6 (1-116)||(33413475-33413590)
chr6 (4-66)||(7412794-7412856)
chr6 (1-110)||(23406717-23406827)
chr6 (4-126)||(4508433-4508555)
chr6 (9-126)||(2813360-2813479)
chr6 (1-66)||(3717411-3717476)
[»] chr8 (20 HSPs)
chr8 (1-131)||(41530569-41530700)
chr8 (1-66)||(27928069-27928134)
chr8 (1-98)||(8885581-8885679)
chr8 (1-126)||(21004295-21004421)
chr8 (1-66)||(42281022-42281087)
chr8 (1-66)||(44106189-44106254)
chr8 (4-66)||(36404285-36404347)
chr8 (1-66)||(28916749-28916814)
chr8 (1-112)||(37248477-37248589)
chr8 (3-66)||(3094647-3094710)
chr8 (2-48)||(17120009-17120055)
chr8 (1-61)||(34853301-34853360)
chr8 (3-42)||(10840886-10840925)
chr8 (9-63)||(9073473-9073527)
chr8 (4-42)||(40392524-40392562)
chr8 (9-42)||(1076542-1076575)
chr8 (1-66)||(16310565-16310630)
chr8 (1-66)||(31520020-31520085)
chr8 (2-42)||(33472057-33472097)
chr8 (2-50)||(35676667-35676715)
[»] scaffold0182 (1 HSPs)
scaffold0182 (6-62)||(23092-23148)
[»] scaffold0137 (1 HSPs)
scaffold0137 (1-109)||(9625-9734)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-112)||(3523-3637)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-62)||(142091-142152)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 6 - 374
Target Start/End: Original strand, 38066801 - 38067153
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaatt 104  Q
    ||||||||||||||||||||||||||||||||          || ||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||    
T  38066801 ccctattttttgaagttttcggattataaaat----------ccataactcattttttcacactataacaaaagaaaacatgaattcggattatgaaatt 38066890  T
Q  105 cggaaacttcaagaacatttttagaagnnnnnnntagggagcgcgagaattccaaaaaataatactcaatctattttatatatttaattatctaactcac 204  Q
    ||||||||| ||||||||||||| |         ||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38066891 cggaaactttaagaacatttttaaagaaaaaaaatagagagtgcgaaaattccaaaaaataatactcaatctattttatatatttaattatctaactcac 38066990  T
Q  205 aaaaaccatagtctagaaaagaaaaccactaacagagtaacatcagatttcagcccctggtattttcccattctttgggcatttcatagcctcttaactt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  38066991 aaaaaccatagtctagaaaagaaaaccactaacagagtaacatcagatttcagcccctggtattttcccattctttgggcatttca-------ttaactt 38067083  T
Q  305 tagcatttcaaagcttcctatatataacaacctccttcactcttcttcatcaaccaaccaaaacacaaga 374  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38067084 tagcatttaaaagcttcctatatataacaacctgcttcactcttcttcatcaaccaaccaaaacacaaga 38067153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 38042612 - 38042806
Alignment:
Q  176 tattttatatatttaattatctaactcacaaaaaccatagtctagaaaagaaaaccactaacagagtaacatcagatttcagcccctggtattttcccat 275  Q
    ||||||||||||||||||||||||||||||||||||||  ||| |||||     ||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  38042612 tattttatatatttaattatctaactcacaaaaaccattttcttgaaaa-----ccactaacagagtaacaacagctttcagcacctggtattttcccat 38042706  T
Q  276 tctttgggcatttcat-agcctcttaactttagcatttcaaagcttcctatatataacaacctccttcactcttcttcatcaaccaaccaaaacacaaga 374  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38042707 tctttgggcatttcattagcctcttaactttagcatttcaaagcttcctatatataacaacctccttcactcttcttcatcaaccaaccaaaacacaaga 38042806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 38044678 - 38044793
Alignment:
Q  260 cctggtattttcccattctttgggcatttcat-agcctcttaactttagcatttcaaagcttcctatatataacaacctccttcactcttcttcatcaac 358  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38044678 cctggtattttcccattctttgggcatttcattagcctcttaactttagcatttcaaagcttcctatatataacaacctccttcactcttcttcatcaac 38044777  T
Q  359 caaccaaaacacaaga 374  Q
    ||||||||||||||||    
T  38044778 caaccaaaacacaaga 38044793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 252 - 374
Target Start/End: Original strand, 38028051 - 38028166
Alignment:
Q  252 tttcagcccctggtattttcccattctttgggcatttcatagcctcttaactttagcatttcaaagcttcctatatataacaacctccttcactcttctt 351  Q
    |||||||| |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38028051 tttcagccactggtattttcccattctttgggcatttcat-------taactttagcatttcaaagcttcctatatataacaacctgcttcactcttctt 38028143  T
Q  352 catcaaccaaccaaaacacaaga 374  Q
    |||||||||||||||||||||||    
T  38028144 catcaaccaaccaaaacacaaga 38028166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 38028209 - 38028304
Alignment:
Q  439 agaatcaatattaatcaaaatgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaagatcaaggaatatg 534  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  38028209 agaatcaatattaatcaagatgagttcaacaagtagagcatgggtagcagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatg 38028304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 38042849 - 38042944
Alignment:
Q  439 agaatcaatattaatcaaaatgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaagatcaaggaatatg 534  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  38042849 agaatcaatattaatcaagatgagttcaacaagtagagcatgggtagcagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatg 38042944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 38044836 - 38044931
Alignment:
Q  439 agaatcaatattaatcaaaatgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaagatcaaggaatatg 534  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  38044836 agaatcaatattaatcaagatgagttcaacaagtagagcatgggtagcagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatg 38044931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 439 - 534
Target Start/End: Original strand, 38067196 - 38067291
Alignment:
Q  439 agaatcaatattaatcaaaatgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaagatcaaggaatatg 534  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||    
T  38067196 agaatcaatattaatcaagatgagttcaacaagtagagcatgggtagcagcaggcagtgttgcagttgttgaagcattgaaagatcaaggaatatg 38067291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 458 - 534
Target Start/End: Original strand, 38019154 - 38019230
Alignment:
Q  458 atgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaagatcaaggaatatg 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38019154 atgagttcaacaagcagagcatgggtagctgcaggcagtgttgcagttgtggaagcattaaaggatcaaggaatatg 38019230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5507439 - 5507321
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattcgg 107  Q
    |||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||  ||||| ||| |||||||  | ||||||||||||||  ||     
T  5507439 tattttttgaagtttttggattacaaaattcgaaaaaatctgtaactcattttttcaccatataacaaaggaaaacactagttcggattatgaaacccga 5507340  T
Q  108 aaacttcaagaacattttt 126  Q
    ||||||||||  |||||||    
T  5507339 aaacttcaagggcattttt 5507321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34517132 - 34517016
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||  ||||  ||||| ||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||| || |||||| ||||    
T  34517132 acgcgccctattttttgagatttttcgattacaaaatccgaaaaaattcgtaactcattttttcaccgtataacaaaggaaaacaccagttcggaatatg 34517033  T
Q  100 aaattcggaaacttcaa 116  Q
    |||| || |||||||||    
T  34517032 aaatccgaaaacttcaa 34517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 25217913 - 25218025
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatg 99  Q
    |||| |||||||||||||||||| ||||||| ||||| ||||||||||||| ||||||||||||||  | |||  ||||||||||||| | ||||||||     
T  25217913 acgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactcattttttcaccctttaacaaaagaaaacatcattgcggattata 25218012  T
Q  100 aaattcggaaact 112  Q
    |||| | ||||||    
T  25218013 aaatccagaaact 25218025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 39447191 - 39447128
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||    
T  39447191 gcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactcattttttcac 39447128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44465851 - 44465916
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  44465851 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcac 44465916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 36949068 - 36949184
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| | ||||| ||||| || |||||||||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  36949068 acgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatg 36949167  T
Q  100 aaattcggaaacttcaa 116  Q
    ||||  |||||| ||||    
T  36949168 aaatctggaaacctcaa 36949184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 17474922 - 17474987
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||| |||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  17474922 acgcgccctattttttaaagtttccggattacaaaatccggaaaaatccgttactcattttttcac 17474987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33452566 - 33452664
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||||| || |||| ||||| |  |||||||||| |||||||||| |||  | |||  ||||||||||||| ||||||||||    
T  33452566 acgcgccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactcatttttccaccctttaacaaaagaaaacatcatttcggattat 33452664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 45153914 - 45154012
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||||| | ||||| |||||||  ||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  45153914 acgcgccctattttttgaagtttccagattacaaaattcagaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccggattat 45154012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 41510551 - 41510613
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||||||||||||||||||||| |||||||  ||||  | |||||||||| |||||||||||    
T  41510551 acgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttactcatttttt 41510613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4268361 - 4268406
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaa 46  Q
    |||||||||||||||||||||||| |||||| ||||| ||||||||    
T  4268361 acgcgccctattttttgaagtttttggattacaaaatccgaaaaaa 4268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 9847548 - 9847613
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||| |||||||||  ||||||||||| |||||  | ||||||| |||||||||||||||||    
T  9847548 acgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactcattttttcac 9847613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25715396 - 25715268
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaa--tccgtaactcattttttcacagtataataaag-aaaacatcaattcggatta 97  Q
    ||||||||||| ||||||  |||| |||||| ||| | ||||||||  |  |||||||||||||||||  | ||| |||| |||||| || | |||||||    
T  25715396 acgcgccctatcttttgagatttttggattacaaagtccgaaaaaaaatttgtaactcattttttcaccctttaacaaaggaaaacaccattccggatta 25715297  T
Q  98 tgaaattcggaaacttcaagaacattttt 126  Q
    | |||| |||||||||||||  |||||||    
T  25715296 taaaatccggaaacttcaagggcattttt 25715268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 38308918 - 38308947
Alignment:
Q  2 cgcgccctattttttgaagttttcggatta 31  Q
    ||||||||||||||||||||||||||||||    
T  38308918 cgcgccctattttttgaagttttcggatta 38308947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2764542 - 2764506
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaat 37  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2764542 acgctccctattttttgaggttttcggattataaaat 2764506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 3703384 - 3703509
Alignment:
Q  7 cctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattc 105  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||| ||| |||||||  | ||||||||||||||| |    
T  3703384 cctattttttgaagttttcggattacaaaatccgaaaaaatccgtaactcattttttcaccctataacaaaggaaaacactagttcggattatgaaatcc 3703483  T
Q  106 ggaaacttcaagaacatttttagaag 131  Q
    ||||||||||||  ||||||| ||||    
T  3703484 ggaaacttcaagggcatttttggaag 3703509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 49397041 - 49396921
Alignment:
Q  7 cctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattc 105  Q
    ||||||||||||||||| ||||||| ||||| || |||||||||||||||  ||||||||  ||||||||| |||||||||| | ||||||||||||| |    
T  49397041 cctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcaccctataataaaggaaaacatcattccggattatgaaatcc 49396942  T
Q  106 ggaaacttcaagaacattttt 126  Q
    ||||||  |||||||||||||    
T  49396941 ggaaaccccaagaacattttt 49396921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 38416600 - 38416479
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaat 103  Q
    |||||||||||| | |||| ||||||| |||||| ||||||||||| |||||||||||||||  ||||| ||| ||||||| | |||| |||||||||||    
T  38416600 gccctatttttttatgtttccggattacaaaatttgaaaaaatccgcaactcattttttcaccctataacaaaggaaaacacctattcagattatgaaat 38416501  T
Q  104 tcggaaacttcaagaacatttt 125  Q
    ||| |||||||||| |||||||    
T  38416500 tcgaaaacttcaaggacatttt 38416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 6228939 - 6229065
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| ||| ||| ||||| || ||||||||||| |||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  6228939 acgcgccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaaggaaaacaccattccggattatg 6229038  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| | ||||| ||||| ||||||||    
T  6229039 aaatcctgaaacctcaaggacattttt 6229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 6003811 - 6003927
Alignment:
Q  11 ttttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattcggaa 109  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||  ||||||||  ||||| ||| |||| || || | ||||||||||||| | |||    
T  6003811 tttttttaagtttccggattataaaattcgaaaaaatccgtaactccatttttcaccctataacaaaggaaaccaccattccggattatgaaatccagaa 6003910  T
Q  110 acttcaagaacattttt 126  Q
    || ||||| | ||||||    
T  6003911 acctcaaggatattttt 6003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 25539080 - 25539188
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaat 103  Q
    ||||||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||||||    
T  25539080 gccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccatataacaaaggaaaacaccattccggattatgaaat 25539179  T
Q  104 tcggaaact 112  Q
     ||||||||    
T  25539180 ccggaaact 25539188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 23523945 - 23523842
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||||||  ||||||||  | ||| ||| |||||||||| | || ||||||    
T  23523945 acgcgtcctattttttgaagtttccggattacaaaatccgaaaaaatccgtaactccatttttcaccctctaacaaaggaaaacatcattccgaattatg 23523846  T
Q  100 aaat 103  Q
    ||||    
T  23523845 aaat 23523842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 32441850 - 32441733
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||| |||||||||||||||| ||||||| ||||| |  |||||||| ||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  32441850 acgcgcgctattttttgaagtttccggattacaaaatccagaaaaatccttaactccatttttcaccctataacaaaggaaaacaccattccggattatg 32441751  T
Q  100 aaattcggaaacttcaag 117  Q
    |||| ||||||| |||||    
T  32441750 aaatccggaaacctcaag 32441733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 55052750 - 55052859
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaa 102  Q
    |||||||||||||||||||| ||||||| | ||| || ||||| |||||||||  ||||||||  ||||| ||| ||||||| || | ||||||||||||    
T  55052750 cgccctattttttgaagtttccggattacataatccggaaaaacccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaa 55052849  T
Q  103 ttcggaaact 112  Q
    | ||||||||    
T  55052850 tccggaaact 55052859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 38536206 - 38536099
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaa 102  Q
    |||||||||||||||||||| || |||| ||||| || ||||| ||||||||   ||||||||  ||||| ||| ||||||| || ||||||||||||||    
T  38536206 cgccctattttttgaagtttccgaattacaaaatccggaaaaacccgtaacttcatttttcaccctataacaaaggaaaacaccatttcggattatgaaa 38536107  T
Q  103 ttcggaaa 110  Q
    | ||||||    
T  38536106 tccggaaa 38536099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25491523 - 25491621
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||| ||||||||||||||||| ||||||| ||||| ||||||||  ||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  25491523 acgcgtcctattttttgaagtttccggattacaaaatccgaaaaaactcgttactcattttttcaccctttaacaaaagaaaacatcattccggattat 25491621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 7931697 - 7931632
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||  ||||| || ||||| |||| ||||||||||||||    
T  7931697 acgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttactcattttttcac 7931632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 48319193 - 48319257
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| |||||||  |||| || |||||||||| ||||||||||||||    
T  48319193 acgcgccctattttttgaagtttccggatta-caaatccggaaaaatccgtcactcattttttcac 48319257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 49002934 - 49003006
Alignment:
Q  7 cctattttttgaagttttcggattataaaattcgaa-aaaatccgtaactcattttttcacagtataataaag 78  Q
    |||||||||||| |||||||||||| |||||| ||| |||||  |||||||||||||||||| ||||| ||||    
T  49002934 cctattttttgaggttttcggattacaaaatttgaataaaatttgtaactcattttttcacattataacaaag 49003006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 46440402 - 46440464
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||| |||||||||| |||||| |||||||||||||||| ||||| |||| | |||||||||    
T  46440402 acgcgtcctatttttttaagtttccggattataaaattcggaaaaacccgttattcatttttt 46440464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 50392537 - 50392599
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||||||| |||||||||  ||| ||||||| ||||| || ||||||||||||||||||||||    
T  50392537 acgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactcatttttt 50392599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 53894119 - 53894228
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| | ||||  ||||| || ||||| |||| | ||||||||||||  | |||  ||||||||||||| | ||||||||     
T  53894119 acgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgttagtcattttttcaccctttaacaaaagaaaacatcattccggattata 53894218  T
Q  100 aaattcggaa 109  Q
     |||||||||    
T  53894219 taattcggaa 53894228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 25752574 - 25752634
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||||||||||||||| ||| ||||||| ||||| || |||||||| | |||||||||||    
T  25752574 gcgccctattttttgaaatttccggattacaaaatccggaaaaatccattactcatttttt 25752634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 29822650 - 29822550
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaagaaaacatcaattcggattatgaaattcgga 108  Q
    ||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||  ||||| |||| ||||| || | |  |||||||||| ||||    
T  29822650 tattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccctataacaaaggaaacaccattccatattatgaaatccgga 29822551  T
Q  109 a 109  Q
    |    
T  29822550 a 29822550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 8106430 - 8106395
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaat 37  Q
    |||||||||||||||||||||||||||||| |||||    
T  8106430 cgcgccctattttttgaagttttcggattacaaaat 8106395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19835559 - 19835461
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    |||| ||||||||||  |||||| ||||||| ||||| || ||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  19835559 acgcaccctatttttcaaagtttccggattacaaaatccggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccggattat 19835461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5865209 - 5865250
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  5865209 acgcgccctattttttgaaattttcagattataaaatccgaa 5865250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17933265 - 17933326
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    |||||||||||||||||||||||  |||||| |||||  | |||||||||| | ||||||||    
T  17933265 acgcgccctattttttgaagtttctggattacaaaatctggaaaaatccgttattcattttt 17933326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 40703698 - 40703645
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatt 59  Q
    |||||||||||||| ||| ||||||| ||||| || |||||||||| |||||||    
T  40703698 ccctattttttgaaatttccggattacaaaatccggaaaaatccgttactcatt 40703645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 41323234 - 41323275
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaaaaaatccg 50  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  41323234 tattttttgaagttttcgaattatataattcaaaaaaatccg 41323275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 54631591 - 54631652
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    ||||||| || |||||||||||| ||||||| ||||| || ||||| |||| ||||||||||    
T  54631591 acgcgccatactttttgaagtttccggattacaaaatccggaaaaacccgttactcattttt 54631652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 34972871 - 34972787
Alignment:
Q  43 aaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaacttcaagaacattttt 126  Q
    ||||||||||||||  ||||||||  ||||| |||| |||||| || | ||||||||||||| ||||||| |||||  |||||||    
T  34972871 aaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 34972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 27212701 - 27212585
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||| |||||||||||||  ||||||||||| ||||| |||||||| |||||||||||||||||||  ||||| ||| |||||||||| |||||||||||    
T  27212701 acgcaccctattttttgagattttcggattacaaaatccgaaaaaacccgtaactcattttttcaccctataacaaaggaaaacatcagttcggattatg 27212602  T
Q  100 aaattcggaaacttcaa 116  Q
    |||| || ||| |||||    
T  27212601 aaatccgaaaatttcaa 27212585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 33487603 - 33487478
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||  ||||||||  | ||| ||| ||||||| || | |||||||||    
T  33487603 acgcgccctattttttgaagttttcggattacaaaattcggaaaaacccgtaactccatttttcaccctgtaacaaaggaaaacaccattccggattatg 33487504  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| ||||||| ||||| ||||||||    
T  33487503 aaatccggaaac-tcaaggacattttt 33487478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 37095043 - 37095167
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaagaaaacatcaattcggattatga 100  Q
    ||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||  ||||||||  ||||| |||| ||||| || | ||||||||||    
T  37095043 acgcgccttatttttt-aagttttcggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaacaccattccggattatga 37095141  T
Q  101 aattcggaaacttcaagaacattttt 126  Q
    |||||| |||| |||||  |||||||    
T  37095142 aattcgaaaacctcaagggcattttt 37095167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 6156724 - 6156615
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  6156724 acgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccatataacaaaggaaaacaccattccggattatg 6156625  T
Q  100 aaattcggaa 109  Q
    |||| |||||    
T  6156624 aaatccggaa 6156615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 15799218 - 15799109
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||  ||||| ||| ||||| | || | |||||||||    
T  15799218 acgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccctataacaaaggaaaataccattccggattatg 15799119  T
Q  100 aaattcggaa 109  Q
    |||| |||||    
T  15799118 aaatccggaa 15799109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 20891602 - 20891497
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatt-ttttcacagtataat-aaagaaaacatcaattcggattatgaaa 102  Q
    ||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||| |||||||  | |||| |||||||||| || |||||||||| |||    
T  20891602 gccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttttcaccatttaataaaagaaaacaccatttcggattataaaa 20891503  T
Q  103 ttcgga 108  Q
    | ||||    
T  20891502 tccgga 20891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 25747018 - 25746908
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaagaaaacatcaattcggattatga 100  Q
    ||||||||||||||| ||||||| ||||||| ||||| || |||||||||| ||||||||||||||  |  |  ||||||||||||| | || ||||| |    
T  25747018 acgcgccctattttt-gaagtttccggattagaaaatccggaaaaatccgttactcattttttcacttttaacaaaagaaaacatcattccgaattataa 25746920  T
Q  101 aattcggaaact 112  Q
    ||| ||||||||    
T  25746919 aatccggaaact 25746908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 38692910 - 38693009
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattc-gaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    |||||||||||||||| |||||| ||||||| ||||||| ||||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  38692910 acgcgccctatttttttaagtttccggattacaaaattcggaaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccggattat 38693009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 12465237 - 12465299
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||||||| ||||||| ||||| || |||||||||||||||  ||||||||    
T  12465237 cgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcac 12465299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 26190426 - 26190552
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||| |||||||||||||||||| ||||||| ||||| || |||||||||||||||  ||||||||   |||| ||| ||||||| || | | |||||||    
T  26190426 acgcaccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcacccgataagaaaggaaaacaccattccagattatg 26190525  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    || |  |||||| ||||| ||||||||    
T  26190526 aagtctggaaacctcaaggacattttt 26190552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 38871664 - 38871602
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||| ||||||||| |||||||||||||||| ||||| || |||||||||| |||||||||||    
T  38871664 acgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactcatttttt 38871602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 4064851 - 4064960
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaa 102  Q
    ||||||||||||| |||||| ||||||| | ||| || ||||| |||||||||  ||||||||  ||||| ||| ||||||| || | ||||||||||||    
T  4064851 cgccctattttttaaagtttccggattacataatccggaaaaacccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaa 4064950  T
Q  103 ttcggaaact 112  Q
    | ||||||||    
T  4064951 tccggaaact 4064960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 5 - 66
Target Start/End: Original strand, 40620122 - 40620183
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||| ||||||| ||||| || ||||||| || ||||||||||||||    
T  40620122 gccctattttttgaagtttccggattacaaaatccggaaaaatctgttactcattttttcac 40620183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 38372299 - 38372237
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||| |||||| ||||||| ||||| |  |||||||||| ||||||||||||||    
T  38372299 cgccctatttttttaagtttccggattacaaaatccagaaaaatccgttactcattttttcac 38372237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 39524766 - 39524672
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggatta 97  Q
    ||||||||||||| |||||| ||||||| ||||| || |||||||| |  |||||||||||||  | |||  ||||||||||||| |||||||||    
T  39524766 cgccctatttttttaagtttccggattacaaaatccggaaaaatccattgctcattttttcaccctttaacaaaagaaaacatcatttcggatta 39524672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11186304 - 11186340
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaat 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11186304 acgcgccctattttttgaggttttcggattataaaat 11186340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 28083508 - 28083604
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||| ||| ||||||| ||||| || ||||| |||| ||||||||| ||||  | |||  ||||||||||||| | ||||||||    
T  28083508 gcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactcattttctcaccctttaacaaaagaaaacatcattccggattat 28083604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 32842101 - 32842149
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatccg 50  Q
    |||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  32842101 cgcgccctattttttgaagtttccggattacaaaatccggaaaaatccg 32842149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 31929236 - 31929295
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    ||||||||||||||||| |||  |||||| ||||| || |||||||||| ||||||||||    
T  31929236 gcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactcattttt 31929295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 117
Target Start/End: Complemental strand, 34440695 - 34440620
Alignment:
Q  43 aaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaacttcaag 117  Q
    ||||||||||||||  ||||| ||  ||||| |||| ||||||||| ||| ||||||||||||||||||| |||||    
T  34440695 aaaatccgtaactccattttttaccctataacaaaggaaaacatcatttcagattatgaaattcggaaacctcaag 34440620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 14001673 - 14001635
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  14001673 cgccctattttttgaggttttcagattataaaattcgaa 14001635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 34530018 - 34529954
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcg---aaaaaatccgtaactcattttttca 65  Q
    ||||||||||||||| ||||| |||||| ||||| ||   |||||||||| ||||||||||||||    
T  34530018 cgccctattttttgaggtttttggattacaaaatccgaaaaaaaaatccgcaactcattttttca 34529954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 36359714 - 36359775
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    ||||| ||||||||||||  |||  |||||| ||||| ||||||| ||||||||||||||||    
T  36359714 acgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactcattttt 36359775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 8739326 - 8739362
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  8739326 ccctattttttgaggttttcggattataaatttcgaa 8739362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 26319100 - 26319000
Alignment:
Q  12 tttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattcggaaa 110  Q
    |||| ||||||| ||||| | ||||| || |||||||||||||||  ||||||||  ||||| ||| ||||||| || | || |||||||||| ||||||    
T  26319100 ttttggaagtttccggataacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccggaaa 26319001  T
Q  111 c 111  Q
    |    
T  26319000 c 26319000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 43388199 - 43388259
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||||||||||||| |  ||| ||||||| ||||| | ||| |||||||||||||||||||    
T  43388199 gcgccctatttttttagatttccggattacaaaatccaaaagaatccgtaactcatttttt 43388259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 47202525 - 47202399
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||||||||||| |||||  | |||||||||||||||  ||||||||  |||||  |||||||||| || | |||||||||    
T  47202525 acgcgccctattttttgaagttttcggattacaaaatctggaaaaatccgtaactccatttttcaccctataacaaaagaaaacaccattccggattatg 47202426  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| ||||||| |||||  |||||||    
T  47202425 aaatccggaaacctcaagggcattttt 47202399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43737155 - 43737090
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  43737155 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcac 43737090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 37518426 - 37518521
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataat-aaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||  |||||||||||| || |||||||||| ||| ||||||||||  | |||| ||||||||||||| || |||||||    
T  37518426 cgccctattttttgaagtttctggattataaaatccggaaaaatccgttacttattttttcaccctttaataaaagaaaacatcattttggattat 37518521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3936139 - 3936041
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  3936139 acgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttcactctttaacaaaagaaaacatcattccggattat 3936041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 28230596 - 28230658
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||| |||||||||||    
T  28230596 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcatttttt 28230658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 28349227 - 28349323
Alignment:
Q  16 tgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaac 111  Q
    |||||||||||||||| |||||||  |||||| ||||||||||||||||||  | ||| |||| |||||| || ||| ||||||||||| |||||||    
T  28349227 tgaagttttcggattacaaaattcagaaaaattcgtaactcattttttcaccatttaacaaagaaaaacaccatttccgattatgaaatccggaaac 28349323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 19225726 - 19225825
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattc-gaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    |||| ||||||||||||||||||| |||||| ||||| | |||||||||||| ||||||||||||||  | |||  ||||||||||||| |||| |||||    
T  19225726 acgcaccctattttttgaagtttttggattacaaaatccggaaaaaatccgttactcattttttcaccctttaacaaaagaaaacatcatttcgaattat 19225825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 42925771 - 42925878
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaa 101  Q
    ||||||||||||||||||||| ||||||| |||||  | ||||| |||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||||    
T  42925771 gcgccctattttttgaagtttccggattacaaaatcaggaaaaacccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaa 42925870  T
Q  102 attcggaa 109  Q
    || |||||    
T  42925871 atccggaa 42925878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8154930 - 8154876
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaact 55  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||    
T  8154930 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaact 8154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 28346173 - 28346048
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaatt 104  Q
    ||||| ||||||||||||  |||||| |||||||| ||| ||||||||||||||||||  |  | ||| ||| |||||||||| | | ||||||||||||    
T  28346173 ccctactttttgaagtttctggattacaaaattcggaaacatccgtaactcatttttt-tctctttaacaaaggaaaacatcattccagattatgaaatt 28346075  T
Q  105 cggaaacttcaagaacatttttagaag 131  Q
    | ||||||||||   ||||||||||||    
T  28346074 cagaaacttcaaaggcatttttagaag 28346048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 24042316 - 24042428
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||| ||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||  ||||  ||| ||||||| || | || ||||||    
T  24042316 acgcgccttattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcaccctatatcaaaggaaaacaccattccgaattatg 24042415  T
Q  100 aaattcggaaact 112  Q
    |||||| ||||||    
T  24042416 aaattcagaaact 24042428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 9151843 - 9151780
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||| ||||||| ||||| || ||||| | || ||||||||||||||    
T  9151843 gcgccctattttttgaagtttccggattacaaaatccggaaaaacctgttactcattttttcac 9151780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 42
Target Start/End: Complemental strand, 43185819 - 43185784
Alignment:
Q  7 cctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||||||||||||||||||||    
T  43185819 cctattttttgaagttttcggattataaaattcgaa 43185784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 36468667 - 36468729
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||||||| |  |||| ||||| || |||||||||| ||||||||||||||    
T  36468667 cgccctattttttgaagtttccatattacaaaatccggaaaaatccgttactcattttttcac 36468729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 36408401 - 36408340
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||||| |||||||||||||||  |||||| ||||| || |||||||||| |||||||||||    
T  36408401 cgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgttactcatttttt 36408340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36629236 - 36629171
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||| |||||  | ||||| ||||| || |||||||||| ||||||||||||||    
T  36629236 acgcgccctatttttttaagttaccagattacaaaatccggaaaaatccgttactcattttttcac 36629171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 37218237 - 37218274
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37218237 gccctattttttgaagttttcggattataaaatccgaa 37218274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 3304897 - 3304997
Alignment:
Q  11 ttttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattcggaa 109  Q
    |||||||||||||  |||||| ||||| || |||||||||||||||  ||||||||  ||||| ||| ||||||| || | |  |||||||||| |||||    
T  3304897 ttttttgaagtttctggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccaaattatgaaatccggaa 3304996  T
Q  110 a 110  Q
    |    
T  3304997 a 3304997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 31643067 - 31642955
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaatt 104  Q
    |||||||||||||||||| |  |||| || || |  |||||||||||||||  ||||||||  ||||| ||| ||||||| || | | |||||||||||     
T  31643067 ccctattttttgaagtttccaaattacaagatccagaaaaatccgtaactccatttttcaccctataacaaacgaaaacaccattccagattatgaaatc 31642968  T
Q  105 cggaaacttcaag 117  Q
    ||||||| |||||    
T  31642967 cggaaacctcaag 31642955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 23442769 - 23442643
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| | ||||||||||| || |||||||||||||||  ||||||||  ||||| ||| |||||||||| | ||||| |||    
T  23442769 acgcgccctattttttgaagtttccagattataaaatccggaaaaatccgtaactccatttttcaccttataacaaaggaaaacatcattccggataatg 23442670  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| ||||||| |||||  |||||||    
T  23442669 aaatccggaaacctcaagggcattttt 23442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 6223876 - 6223969
Alignment:
Q  11 ttttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaat 103  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  ||||| ||| |||||||  | |||||||||||||||    
T  6223876 ttttttgaagttttcggattgaaaaattcgaaaaaatccgtaactcattttttcaccctataacaaaggaaaacacgagttcggattatgaaat 6223969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 52744946 - 52745011
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcaca 67  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||| |||||||||||||||    
T  52744946 cgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactcattttttcaca 52745011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 44573224 - 44573289
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||| || ||||||||||||||    
T  44573224 acgcgccctattttttgaagtttccggattacaaaatccgaaaaaatctgttactcattttttcac 44573289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 27794883 - 27794760
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaa 101  Q
    ||||||||||||| ||  ||||||||||| |||||  |||||||||| ||||||||||||||||  ||||| ||| ||||||| || |||||||||||||    
T  27794883 gcgccctattttt-gagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaacaccagttcggattatgaa 27794785  T
Q  102 attcggaaacttcaagaacattttt 126  Q
    || || ||| ||||||  |||||||    
T  27794784 atccgaaaatttcaagggcattttt 27794760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 33611538 - 33611664
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| |  |||| ||||| ||||||||||||||||||  ||||||||  ||||| |||| |||||| || |  ||||||||    
T  33611538 acgcgccctattttttgaagtttccaaattacaaaatccgaaaaaatccgtaactccatttttcaccctataacaaagaaaaacaccattctggattatg 33611637  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| | ||||| |||||  |||||||    
T  33611638 aaatccagaaacctcaagggcattttt 33611664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 103
Target Start/End: Original strand, 40908065 - 40908165
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatgaaa 102  Q
    ||||| |||||||||||||| ||||||  ||||||| ||||||||||| ||||||||||||||  | |||  |||||||||| || |||||||||| |||    
T  40908065 cgcccaattttttgaagtttccggattgcaaaattctaaaaaatccgttactcattttttcaccctttaacaaaagaaaacaccatttcggattataaaa 40908164  T
Q  103 t 103  Q
    |    
T  40908165 t 40908165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 15069976 - 15070079
Alignment:
Q  7 cctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatgaaattc 105  Q
    ||||||||||||||||| ||||||| ||||| |||||| |||||| |||||||| ||| |  | |||  ||||||||||||| ||||||||||  |||||    
T  15069976 cctattttttgaagtttccggattacaaaatccgaaaatatccgttactcatttgttctccctttaacaaaagaaaacatcatttcggattatataattc 15070075  T
Q  106 ggaa 109  Q
    ||||    
T  15070076 ggaa 15070079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 40650806 - 40650865
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||||||||||||||||||| ||||||| ||| | ||||||||||||| |||||||||||    
T  40650806 cgccctattttttgaagtttccggattacaaattccgaaaaaatccgttactcatttttt 40650865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 45046982 - 45047041
Alignment:
Q  5 gccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttc 64  Q
    ||||| ||||||||||||||||||||| ||||| || |||||||||| ||||||||||||    
T  45046982 gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttactcattttttc 45047041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 34162852 - 34162962
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattc-gaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaa 101  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||| ||| |||||  ||||||||  ||||| ||| ||||||| || | |||||||||||    
T  34162852 cgccctattttttgaagtttccggattacaaaatccggaaaaaacccgcaactccatttttcaccctataacaaaggaaaacaccattccggattatgaa 34162951  T
Q  102 attcggaaact 112  Q
    || ||||||||    
T  34162952 atccggaaact 34162962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 49786300 - 49786175
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaatt-cggattat 98  Q
    ||||| |||||||||| |||||||||||||  ||||| || |||||||| ||||||  ||||||||  ||||||||| ||||||| ||||| | ||||||    
T  49786300 acgcgtcctattttttaaagttttcggattgcaaaatccggaaaaatccataactccatttttcaccctataataaaggaaaaca-caattccagattat 49786202  T
Q  99 gaaattcggaaacttcaagaacatttt 125  Q
    ||||| ||||||| ||||  |||||||    
T  49786201 gaaatccggaaacctcaaagacatttt 49786175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 45568005 - 45568066
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    |||||||||||||||||||||| || |||| |||||||| ||||| |||| |||||||||||    
T  45568005 cgcgccctattttttgaagtttccgaattacaaaattcggaaaaacccgttactcatttttt 45568066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 32817741 - 32817837
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||| ||||||| |||||  | ||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  32817741 gcgccctattttttgaagtttccggattacaaaatctggaaaaacccgttactcattttttcaccctttaacaaaagaaaacatcattccggattat 32817837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 18583672 - 18583798
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||||||||||||| |||||| | ||||| ||||| || |||| |||||||||   ||||||||  ||||| ||| ||||||| || | |||||||||    
T  18583672 acgcgccctatttttttaagtttccagattacaaaatccggaaaagtccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatg 18583771  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| || |||| |||||  |||||||    
T  18583772 aaatccgaaaacctcaagggcattttt 18583798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 42545998 - 42545937
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    ||||| ||||||||||||||||| ||||||| ||||| || |||||||||| | ||||||||    
T  42545998 acgcgtcctattttttgaagtttccggattacaaaatccggaaaaatccgttattcattttt 42545937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 43319324 - 43319389
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||| |||||||| |  ||| ||||||| ||||| || |||||||||||||||||||||||||    
T  43319324 acgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactcattttttcac 43319389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 24472963 - 24472994
Alignment:
Q  6 ccctattttttgaagttttcggattataaaat 37  Q
    ||||||||||||||||||||||||||||||||    
T  24472963 ccctattttttgaagttttcggattataaaat 24472994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 890536 - 890498
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  890536 cgccctattttttgaggttttcggattataaaatccgaa 890498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 26723614 - 26723660
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccg 50  Q
    |||||||||||||||||||| ||||||| ||||| | ||||||||||    
T  26723614 cgccctattttttgaagtttccggattacaaaatccaaaaaaatccg 26723660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 7011230 - 7011178
Alignment:
Q  11 ttttttgaagttttcggattataaaattc-gaaaaaatccgtaactcattttt 62  Q
    ||||||||||||| ||||||| ||||| | |||||||||||| ||||||||||    
T  7011230 ttttttgaagtttccggattacaaaatccagaaaaaatccgttactcattttt 7011178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 24471474 - 24471558
Alignment:
Q  43 aaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaacttcaagaacattttt 126  Q
    ||||||||||||||  |||| |||  ||||| |||| |||||| || | ||||||||||||| ||||||| ||||| ||||||||    
T  24471474 aaaatccgtaactccattttgcaccctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaaggacattttt 24471558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 126
Target Start/End: Original strand, 30829625 - 30829709
Alignment:
Q  43 aaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaacttcaagaacattttt 126  Q
    |||||||||||||   ||||||||  ||||| |||| |||||| || | ||||||||||||| |||||||||||||  |||||||    
T  30829625 aaaatccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaacttcaagggcattttt 30829709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 50716280 - 50716171
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaa 102  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||||  ||||||||  ||||| ||| ||||| | || | ||||||||||||    
T  50716280 cgccctattttttgaagttttcggattacaaaatccgaaaaaacccgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaa 50716181  T
Q  103 ttcggaaact 112  Q
    ||||||||||    
T  50716180 ttcggaaact 50716171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 50796567 - 50796676
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaa 102  Q
    |||||||||||||||||||||||||||| ||||| |||||||| |||||||||  ||||||||  ||||| ||| ||||| | || | ||||||||||||    
T  50796567 cgccctattttttgaagttttcggattacaaaatccgaaaaaacccgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaa 50796666  T
Q  103 ttcggaaact 112  Q
    ||||||||||    
T  50796667 ttcggaaact 50796676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 49096363 - 49096480
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaagaaaa-catcaattcggattatgaaattcgg 107  Q
    ||||||||||  ||| ||||||| ||||| || |||||||||||||| |||||| |||  | |||||||||||| ||||| | | |||||||||||||||    
T  49096363 tattttttgagatttccggattacaaaatccggaaaaatccgtaacttattttt-caccctttaataaagaaaaacatcattccagattatgaaattcgg 49096461  T
Q  108 aaacttcaagaacattttt 126  Q
    |||||||||| ||||||||    
T  49096462 aaacttcaaggacattttt 49096480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 47123135 - 47123072
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcac 47123072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 47130501 - 47130438
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||| |||| ||||||||||||||    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactcattttttcac 47130438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 51258433 - 51258308
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaag-aaaacatcaattc-ggattat 98  Q
    ||||||||||||||||||| |||  |||||| ||||| || ||||||||||||||||||||| |||  | ||| |||| |||||| |||||| |||||||    
T  51258433 acgcgccctattttttgaaatttatggattacaaaatccggaaaaatccgtaactcattttt-caccctttaacaaaggaaaaca-caattccggattat 51258336  T
Q  99 gaaattcggaaacttcaagaacattttt 126  Q
    ||||| | ||||||||||| ||||||||    
T  51258335 gaaatccagaaacttcaaggacattttt 51258308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 33438553 - 33438488
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||||||||||| |||||| |||||||  |||||||||| ||| ||||||||||    
T  33438553 acgcgccctattttttgaagtttttggattacaaaattcagaaaaatccgttacttattttttcac 33438488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34821524 - 34821589
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||| ||||| ||||||||||||||    
T  34821524 acgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactcattttttcac 34821589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 48304017 - 48303896
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaatt 104  Q
    |||||||||||||  ||| ||||||| ||||| || |||||||||||||||||||||||||  | ||| ||| ||||||| || | |||||||||||||     
T  48304017 ccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattccggattatgaaatc 48303918  T
Q  105 cggaaacttcaagaacattttt 126  Q
     |||||| |||||  |||||||    
T  48303917 tggaaacctcaagggcattttt 48303896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 30721939 - 30722063
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactca-ttttttcacagtataataaa-gaaaacatcaattcggattatga 100  Q
    ||||||||||||||||||||||||||||| |||||   |||| |||| ||||||| |||||||||  ||||| ||| ||||||| || ||| ||||||||    
T  30721939 gcgccctattttttgaagttttcggattacaaaatctaaaaacatccataactcatttttttcactctataacaaaggaaaacaccagttcagattatga 30722038  T
Q  101 aattcggaaacttcaagaacatttt 125  Q
    ||| || |||| |||| | ||||||    
T  30722039 aatccgaaaacatcaaaagcatttt 30722063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 3937419 - 3937293
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||  ||||||||  |||||||   ||||| ||| ||||||| || |  |||||||     
T  3937419 acgcgccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactccatttttcatcctataacaaaggaaaacaccattctggattata 3937320  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    |||| ||||||| |||||  |||||||    
T  3937319 aaatccggaaacctcaagggcattttt 3937293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 3902934 - 3903043
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||| |||||||||||||||||||||||| ||||| || ||||| | |||||||   |||||||  ||||| ||| ||||||| || | |||||||||    
T  3902934 acgcgctctattttttgaagttttcggattacaaaatccggaaaaaccagtaactccacttttcaccctataacaaaggaaaacaccattccggattatg 3903033  T
Q  100 aaattcggaa 109  Q
    |||| |||||    
T  3903034 aaatccggaa 3903043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 45244420 - 45244356
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttca 65  Q
    ||||||||||||||||||  |||||| |||| ||||| || |||||||| |||||||||||||||    
T  45244420 acgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactcattttttca 45244356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 47740060 - 47740158
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||||| ||||||| |||||  | ||||||| ||  |||||||||||||  | |||  ||||||||||||| | ||||||||    
T  47740060 acgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttgctcattttttcaccctttaacaaaagaaaacatcattccggattat 47740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51540742 - 51540804
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||||||||||||||||||||| ||||||  ||||| |  |||||||||| |||||||||||    
T  51540742 acgcgccctattttttgaagtttccggattccaaaatccagaaaaatccgttactcatttttt 51540804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 28873034 - 28872910
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatg 99  Q
    ||||| ||||||||||||| ||||||||||||||||| |  |||||  |||||||   ||||||||  ||||| |||| ||||||||| | | |||||||    
T  28873034 acgcgtcctattttttgaaattttcggattataaaatccagaaaaactcgtaacttcatttttcaccctataacaaagaaaaacatcattccagattatg 28872935  T
Q  100 aaattcggaaacttcaagaacatttt 125  Q
    |||| || |||| ||||| |||||||    
T  28872934 aaatccgaaaac-tcaaggacatttt 28872910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 38977876 - 38977941
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| |||||    |||||||||| ||| ||||||||||    
T  38977876 acgcgccctattttttgaagtttccggattacaaaatctagaaaaatccgttacttattttttcac 38977941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 42936659 - 42936583
Alignment:
Q  42 aaaaatccgtaactcattttttcacagtataataaag-aaaacatcaattcggattatgaaattcggaaacttcaag 117  Q
    ||||||||||||||| |||||||||  | ||| |||| |||||| || | ||||||||||||| |||||||||||||    
T  42936659 aaaaatccgtaactccttttttcaccctttaacaaaggaaaacaccattccggattatgaaatccggaaacttcaag 42936583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 46622918 - 46622977
Alignment:
Q  7 cctattttttgaagttttcggatt-ataaaattcgaaaaaatccgtaactcattttttca 65  Q
    ||||||||||||||||| ||| || ||||||| || |||||||||| |||||||||||||    
T  46622918 cctattttttgaagtttccggttttataaaatccggaaaaatccgttactcattttttca 46622977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 501269 - 501314
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaa 46  Q
    |||||||||||||||||||||||| |||||| ||||| || |||||    
T  501269 acgcgccctattttttgaagtttttggattacaaaatccggaaaaa 501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 2358761 - 2358854
Alignment:
Q  11 ttttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaat 103  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||||||    
T  2358761 ttttttgaagtttccggattacaaaatccaggaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaat 2358854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 42936726 - 42936685
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaat 47  Q
    |||||||||||||||||||||||||| ||||| || ||||||    
T  42936726 ccctattttttgaagttttcggattacaaaatccggaaaaat 42936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 51492847 - 51492814
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||||||||||||| ||||    
T  51492847 tattttttgaagttttcggattataaaatccgaa 51492814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 43473155 - 43473203
Alignment:
Q  78 gaaaacatcaattcggattatgaaattcggaaacttcaagaacattttt 126  Q
    ||||||| || | ||||||||||||||||||||| ||||| ||||||||    
T  43473155 gaaaacaccattccggattatgaaattcggaaacctcaaggacattttt 43473203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5699589 - 5699477
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||| |||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  5699589 acgcgccctattttttcaagtttccggattacaaaattcgaaaaaacccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatg 5699490  T
Q  100 aaattcggaaact 112  Q
    |||| ||||||||    
T  5699489 aaatccggaaact 5699477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 24604493 - 24604617
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactca-ttttttcacagtataataaa-gaaaacatcaattcggattatgaa 101  Q
    ||||||||||||||||||||| |||||| |||||||| |||||||| ||||||| |||||||||  ||| | ||| ||||||| || |||||| ||||||    
T  24604493 cgccctattttttgaagtttttggattacaaaattcggaaaaatccttaactcatttttttcaccctatgacaaaggaaaacaccagttcggaatatgaa 24604592  T
Q  102 attcggaaacttcaagaacattttt 126  Q
    || || |||||||||| ||||||||    
T  24604593 atccgaaaacttcaaggacattttt 24604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 32035144 - 32035026
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||  |||||||   |||||  ||||||||||||| | | |||||||    
T  32035144 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcatcatataacaaaagaaaacatcattccagattatg 32035045  T
Q  100 aaattcggaaacttcaaga 118  Q
    |||| || |||| ||||||    
T  32035044 aaatccgaaaacctcaaga 32035026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1945657 - 1945722
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
T  1945657 acgcaccctagtttttgaagttttcggattacaaaatccggaaaaatccgtaactcattttttcac 1945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 14587688 - 14587753
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||| |||||||||||||| ||||| || |||||||| | ||||||||||||||    
T  14587688 acgcgccctattttttaaagttttcggattacaaaatccggaaaaatcccttactcattttttcac 14587753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 17264441 - 17264376
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| | ||||| ||||| || |||||||||| ||||||||||||||    
T  17264441 acgcgccctattttttgaagtttccagattacaaaatccggaaaaatccgttactcattttttcac 17264376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 33413475 - 33413590
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||||||||||| |||||||| ||||||| |||||||  |||||| ||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  33413475 acgcgccctatttt-tgaagtttccggattacaaaattcagaaaaattcgtaactccatttttcaccctataacaaaggaaaacaccattccggattatg 33413573  T
Q  100 aaattcggaaacttcaa 116  Q
    |||| ||||||| ||||    
T  33413574 aaatccggaaacatcaa 33413590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 7412856 - 7412794
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||||||| ||||||| ||||| || ||||| |||| ||||||||||||||    
T  7412856 cgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttcac 7412794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23406827 - 23406717
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||||||| |||||||  ||||||| |||||  ||||||||  ||||||||  ||||| ||| ||||||| || | ||||||| |    
T  23406827 acgcgccctattttttgaagtttccggattacgaaattcggaaaaactcgtaactccatttttcaccctataacaaaggaaaacaccattccggattacg 23406728  T
Q  100 aaattcggaaa 110  Q
    |||| ||||||    
T  23406727 aaatccggaaa 23406717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 4508433 - 4508555
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattatgaaa 102  Q
    ||||||| |||||||| |||  |||||||||||| || |||||||||| ||||||||||||||  | |||  |||||||||| || |  ||||||| |||    
T  4508433 cgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactcattttttcaccctctaacaaaagaaaacaccattctggattataaaa 4508532  T
Q  103 ttcggaaacttcaagaacattttt 126  Q
    | ||||||||| ||| ||||||||    
T  4508533 tccggaaactt-aaggacattttt 4508555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 2813360 - 2813479
Alignment:
Q  9 tattttttgaagttttcggattataaa--attcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatgaaattc 105  Q
    ||||||||||||||| ||||||| |||  || || ||||||| |||||||  ||||||||  ||||||||| ||||||| || | || |||||||||| |    
T  2813360 tattttttgaagtttccggattacaaaatatccggaaaaatctgtaactccatttttcaccctataataaaggaaaacaccattccgaattatgaaatcc 2813459  T
Q  106 ggaaacttcaagaacattttt 126  Q
    |||| | ||||||||||||||    
T  2813460 ggaagc-tcaagaacattttt 2813479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 3717411 - 3717476
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||| |||||||||||| ||||||| |||||||| ||||  || | ||||||||||||||    
T  3717411 acgcgccctaatttttgaagtttccggattacaaaattcggaaaagcccattactcattttttcac 3717476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 41530700 - 41530569
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||||||||| |||  | ||| ||| |||||||||| | ||||||||     
T  41530700 acgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttccaccctttaacaaaggaaaacatcattccggattata 41530601  T
Q  100 aaattcggaaacttcaagaacatttttagaag 131  Q
    |||| | |||||||||||  ||||||| ||||    
T  41530600 aaatccagaaacttcaagggcatttttggaag 41530569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 27928069 - 27928134
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  27928069 acgcgccctattttttgaagtttccggattacaaaatccggaaaaatccgttactcattttttcac 27928134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 8885581 - 8885679
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggattat 98  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||||||||||||||  | |||  ||||||||||||| | ||||||||    
T  8885581 acgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactcattttttcactctttaacaaaagaaaacatcattccggattat 8885679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 21004421 - 21004295
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    ||||||| |||||||| |||||| ||||||| ||||| || |||||||||||||||  ||||||||  ||||| ||| ||||||| || | |||||||||    
T  21004421 acgcgccttattttttaaagtttccggattacaaaatccggaaaaatccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatg 21004322  T
Q  100 aaattcggaaacttcaagaacattttt 126  Q
    ||||  |||||| |||||  |||||||    
T  21004321 aaatctggaaacctcaagggcattttt 21004295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 42281022 - 42281087
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||| ||||||||||||||||||||||||  |||| || |||||||||| ||||||||||||||    
T  42281022 acgcgctctattttttgaagttttcggattacgaaatccggaaaaatccgttactcattttttcac 42281087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 44106254 - 44106189
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| |||||  | |||||||||| ||||||||||||||    
T  44106254 acgcgccctattttttgaagtttccggattacaaaatctggaaaaatccgttactcattttttcac 44106189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 36404285 - 36404347
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||||||||||||  ||||||||||| ||||| || || ||||||||||||||||||||||    
T  36404285 cgccctattttttgagattttcggattacaaaatccggaataatccgtaactcattttttcac 36404347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 28916814 - 28916749
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||||| ||||||| ||||| || ||||| |||| || |||||||||||    
T  28916814 acgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttacccattttttcac 28916749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 37248589 - 37248477
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaattcggattatg 99  Q
    |||||||||||||||| |||||||||||||| ||||| |  ||||| |||||||||  ||||||||  ||||| ||| ||||||| || |  ||||| ||    
T  37248589 acgcgccctatttttttaagttttcggattacaaaatccagaaaaacccgtaactccatttttcaccctataacaaaggaaaacaccattctggattttg 37248490  T
Q  100 aaattcggaaact 112  Q
    |||| ||||||||    
T  37248489 aaatccggaaact 37248477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 3094710 - 3094647
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    ||||||||||||||||||||| ||||||| ||||| || ||||| |||||||||  ||||||||    
T  3094710 gcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaactccatttttcac 3094647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 17120009 - 17120055
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatc 48  Q
    ||||||| |||||||||||||||||||||||| ||| ||||||||||    
T  17120009 cgcgcccaattttttgaagttttcggattatataatccgaaaaaatc 17120055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 34853360 - 34853301
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttt 61  Q
    |||||||||||||||| |||||||||||||| ||||| || ||||| |||| |||||||||    
T  34853360 acgcgccctattttttaaagttttcggattacaaaatccggaaaaacccgt-actcatttt 34853301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 10840886 - 10840925
Alignment:
Q  3 gcgccctattttttgaagttttcggattataaaattcgaa 42  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  10840886 gcgccctattttttgaggttttcggattataaaatccgaa 10840925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 9073527 - 9073473
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaaaaaatccgtaactcatttttt 63  Q
    ||||||||||||||| |||||||  |||| ||||||| ||||| |||||||||||    
T  9073527 tattttttgaagtttccggattaacaaatccgaaaaagtccgttactcatttttt 9073473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 40392562 - 40392524
Alignment:
Q  4 cgccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  40392562 cgccctattttttgaagtttttggattataaaatccgaa 40392524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 1076575 - 1076542
Alignment:
Q  9 tattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||||||||||||||| ||||    
T  1076575 tattttttgaagttttcggattataaaatccgaa 1076542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 16310630 - 16310565
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||| |||||||||||||||||| ||||||| ||||| || ||||| | |||||||  ||||||||    
T  16310630 acgcaccctattttttgaagtttccggattacaaaatccggaaaaacctgtaactccatttttcac 16310565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31520020 - 31520085
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcac 66  Q
    |||||| ||||||||||||||||  |||||| ||||| || ||||| |||||||||  ||||||||    
T  31520020 acgcgctctattttttgaagtttctggattacaaaatccggaaaaagccgtaactccatttttcac 31520085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 33472097 - 33472057
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaa 42  Q
    ||||||||||||||||| |||||||||||||| ||| ||||    
T  33472097 cgcgccctattttttgaggttttcggattatagaatccgaa 33472057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 35676667 - 35676715
Alignment:
Q  2 cgcgccctattttttgaagttttcggattataaaattcgaaaaaatccg 50  Q
    |||||||||||||||| ||||| ||||||| ||||| || |||||||||    
T  35676667 cgcgccctattttttgtagtttccggattacaaaatccggaaaaatccg 35676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 23148 - 23092
Alignment:
Q  6 ccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||    
T  23148 ccctattttttgaagtttccggattataaaattcggaaaaatccgttactcattttt 23092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9625 - 9734
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttttcacagtataataaa-gaaaacatcaatt-cggattat 98  Q
    ||||| ||||||||||||||||| ||||||| |||||||| ||||| |||||||||  ||||||||  ||||| ||| ||||||| ||||| || |||||    
T  9625 acgcgtcctattttttgaagtttccggattacaaaattcggaaaaacccgtaactctatttttcaccctataacaaaggaaaaca-caattccgaattat 9723  T
Q  99 gaaattcggaa 109  Q
    ||||| |||||    
T  9724 gaaatccggaa 9734  T

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Target: scaffold0508 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 3523 - 3637
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcg--aaaaaatccgtaactcattttttcacagtataa-taaagaaaacatcaattcggatta 97  Q
    |||||||||||||||||||||||   ||||| ||||||||  ||||||| ||| ||||||||||||||  | |||  |||||||||| || | |||||||    
T  3523 acgcgccctattttttgaagtttctagattacaaaattcgaaaaaaaattcgttactcattttttcaccctttaacaaaagaaaacaccattccggatta 3622  T
Q  98 tgaaattcggaaact 112  Q
    | | |||||||||||    
T  3623 taagattcggaaact 3637  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 142091 - 142152
Alignment:
Q  1 acgcgccctattttttgaagttttcggattataaaattcgaaaaaatccgtaactcattttt 62  Q
    ||||||||||||||||||||||| ||||||| |||||  | ||||||| || || |||||||    
T  142091 acgcgccctattttttgaagtttccggattacaaaatctggaaaaatctgttacacattttt 142152  T

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