View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_3 (Length: 793)
Name: NF1740_low_3
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 36 - 783
Target Start/End: Complemental strand, 51414094 - 51413356
Alignment:
| Q |
36 |
ttttgagagggaacaaaacatattaattcttannnnnnngttagcaaaagagtgattaaccatttgaatttagaaagggaaggtaattgaaataaacgta |
135 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51414094 |
ttttgagagtgaacaaaacatattaattcttatttttttgttagcaaaagagtgattaaccagttgaatttagaaagggaaggtaattgaaataaacgta |
51413995 |
T |
|
| Q |
136 |
gtaatagtaaagtgaaagaagctagctttgttgat---agcataacaacactacagtacgaaaagaaaacaattgcaggtcaataataaggtacctacaa |
232 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51413994 |
gtaa------agtgaaagaagctagctttgttgatgatagcataacaacactacagtacgaaaagaaaacaattgcaggtcaataataaggtacctacaa |
51413901 |
T |
|
| Q |
233 |
ttacatgaactaacattaacattaacattaacataacatatacatagtacagagattcaaagagagagcctcagaaacagatttgtcactggagtttgaa |
332 |
Q |
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| T |
51413900 |
ttacatgaactaacattaacattaacat------aacatatacatagtacagagattcaaagagagagcctcagaagcagatttgtcactggagtttgaa |
51413807 |
T |
|
| Q |
333 |
tatgattcacctgccacatccacatgattactagctgggtcaaatacacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatcc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51413806 |
tatgattcacctgccacatccacatgattactagctgggtcaaacacacaggacacgtcagcattaatagtgatgttgatgttgatgttgatgatgatcc |
51413707 |
T |
|
| Q |
433 |
aaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtcaacatgaaactctttctccttttctgtctccctagaca |
532 |
Q |
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| T |
51413706 |
aaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgcctggtcaacatgaaactctttctccttttctgtctccctagaca |
51413607 |
T |
|
| Q |
533 |
aagttgtcatcttcacgcgcctcctttcattgccgcgacacaccttcatttgccggcgaccatcctccttggccggagacaaaagcttcctcctactact |
632 |
Q |
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| T |
51413606 |
aagttgtcatcttcacgcgcctcctttcattgccgcgacacaccttcatttgccggcgaccatcctccttggccggagacaaaagcttcctcctactact |
51413507 |
T |
|
| Q |
633 |
gctggcgccaccgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcac |
732 |
Q |
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| T |
51413506 |
gctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcac |
51413407 |
T |
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| Q |
733 |
gtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
783 |
Q |
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| T |
51413406 |
gtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 605 - 783
Target Start/End: Complemental strand, 51418584 - 51418409
Alignment:
| Q |
605 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatgaa |
704 |
Q |
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| T |
51418584 |
ccggagataatagcttcctcctactactgtttgcaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaa |
51418488 |
T |
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| Q |
705 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
783 |
Q |
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| T |
51418487 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 423 - 488
Target Start/End: Complemental strand, 51418763 - 51418698
Alignment:
| Q |
423 |
atgatgatccaaccatttctgcaacctcaattctctgtaaaacttttctatgaactcttccgccgc |
488 |
Q |
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| T |
51418763 |
atgatgatccaaccatttctgcaacctcaactctctgtaaaacctctctatgaactcctctgccgc |
51418698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 713
Target Start/End: Complemental strand, 51416582 - 51416472
Alignment:
| Q |
604 |
gccggagacaaaagcttcctcctactactgctggcgccac-cgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatg |
702 |
Q |
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|||||||| || ||||| |||||||| ||||| || ||| | |||| |||| | |||||| |||| ||||| ||||||||||| ||||||||||||| | |
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| T |
51416582 |
gccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacg |
51416483 |
T |
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| Q |
703 |
aaatacatatc |
713 |
Q |
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| T |
51416482 |
aaatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 682 - 752
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
682 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgctt |
752 |
Q |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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