View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_30 (Length: 544)
Name: NF1740_low_30
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Complemental strand, 55396700 - 55396186
Alignment:
| Q |
17 |
aaacactaatccataatctttctggaggcaaaccaaactcaatggtagataagtcccatgcccattgaatagcttgttttttgaaataatcaccaaagct |
116 |
Q |
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| T |
55396700 |
aaacactaatccataatctttctggaggcaaaccaaactcaatggtagataagtcccatgcccattgaatagcttgttttttgaaataatcaccaaagct |
55396601 |
T |
|
| Q |
117 |
gaagttaccaagcatctcaaagaaggtatgatgtcgtgaggtatgaccaacattgttgatatcattagtacggatgcagcgttgtgaagtagtagcacga |
216 |
Q |
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| T |
55396600 |
gaagttaccaagcatctcaaagaaggtatgatgtcgtgaggtatgaccaacattgttgatatcattagtacggatgcagcgttgtgaagtagtagcacga |
55396501 |
T |
|
| Q |
217 |
gggacttgtctaggaagttttccaagaaagataggtttgaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaacgagagaagcac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55396500 |
gggacttgtctaggaagttttccaagaaagataggtttgaattgaagcataccagcaatggtgaggagaacagtagggtcatctggaacgagagaagcac |
55396401 |
T |
|
| Q |
317 |
tgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgagttcgg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55396400 |
tgggaaggaccttgtgaccacgggaagcataaaaactaagaaatctttcccgtatggaatctccactcacacaattactatcattgtcttgcgagttcgg |
55396301 |
T |
|
| Q |
417 |
tgatgacaacgacgatgatgtacagaaggaaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctcctgctgctgctgctaat |
516 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55396300 |
tgatgacaacgacgatgatgtacagaagggaagaagaagacgacgacgtagatgtagttgtttgaaagagataaatcctcctgctgctgctgctgctaat |
55396201 |
T |
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| Q |
517 |
gtaacattcatattc |
531 |
Q |
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| T |
55396200 |
gtaacattcatattc |
55396186 |
T |
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