View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_33 (Length: 520)

Name: NF1740_low_33
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_33
NF1740_low_33
[»] chr3 (5 HSPs)
chr3 (74-510)||(8102818-8103254)
chr3 (77-303)||(40146733-40146956)
chr3 (375-510)||(40146992-40147127)
chr3 (22-65)||(8103300-8103343)
chr3 (27-64)||(40146646-40146683)
[»] chr4 (9 HSPs)
chr4 (74-372)||(7606716-7607014)
chr4 (76-303)||(7629170-7629397)
chr4 (80-354)||(7637565-7637839)
chr4 (74-372)||(7655481-7655776)
chr4 (76-303)||(7615781-7616008)
chr4 (74-163)||(7399159-7399248)
chr4 (400-448)||(7637486-7637534)
chr4 (81-164)||(39075927-39076010)
chr4 (400-430)||(7606673-7606703)
[»] chr6 (2 HSPs)
chr6 (74-303)||(6501060-6501285)
chr6 (74-150)||(11969610-11969686)
[»] chr7 (4 HSPs)
chr7 (76-350)||(8935444-8935718)
chr7 (93-354)||(8910526-8910783)
chr7 (400-448)||(8910814-8910862)
chr7 (76-146)||(8934503-8934573)
[»] scaffold0190 (1 HSPs)
scaffold0190 (74-213)||(5071-5210)
[»] chr8 (2 HSPs)
chr8 (222-303)||(15190673-15190754)
chr8 (74-145)||(34174825-34174896)


Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 74 - 510
Target Start/End: Complemental strand, 8103254 - 8102818
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 173  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8103254 aactacgaaggcacatcacaaccattgtttgccgtgcaagtgacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 8103155  T
Q  174 gaacttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttcc 273  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  8103154 gaacttcggcatggtatttcattaattcgtgggctgaaatctcacgtggtggttgttgcaatcaaacatccaaactctcaacacttgaacgttggtttcc 8103055  T
Q  274 agatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaacta 373  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8103054 agatggtattcaatgtcccatacgatttcccttcactaagaagctacaaaataaccaatctgatgggttgagtttttcatcatctaataacgaaaaacta 8102955  T
Q  374 aataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaaca 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8102954 aataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacgggtacgaaca 8102855  T
Q  474 aaatatcttcccttcaagcactttttgcacacctttg 510  Q
    |||||||||||||||||||||||||||||||||||||    
T  8102854 aaatatcttcccttcaagcactttttgcacacctttg 8102818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 77 - 303
Target Start/End: Original strand, 40146733 - 40146956
Alignment:
Q  77 tacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaa 176  Q
    |||||||||||||||||||||||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |||||||||| ||||||||| |||     
T  40146733 tacgaaggcacatcacaaccattgttagctgtgcaagtgacagagttagttgacggcttcttcattggttttacatttaaccatgcggttgttgacggag 40146832  T
Q  177 cttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccaga 276  Q
      ||  |||||  |||||||||||| |||||  |||| || |   ||||||||||||||||| |||||||||||  ||| || ||||| |||||||||      
T  40146833 agtccacatggcttttcattaattcatgggcgaaaatctcgc---gtggttgttgcaatcaagtatccaaactcataacgctagaacgttggtttccaag 40146929  T
Q  277 tggtattcaacgtcccatacgatttcc 303  Q
    ||||||||||| |||||||||||||||    
T  40146930 tggtattcaacatcccatacgatttcc 40146956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 375 - 510
Target Start/End: Original strand, 40146992 - 40147127
Alignment:
Q  375 ataacgaaaaactcaacccatcagttaggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaagccaacttagaaacggatacgaacaa 474  Q
    ||||||||||  |||| |||||||  |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| | || |  | ||| |||||    
T  40146992 ataacgaaaagttcaatccatcagagaggttattccatttcacaaaggagaaaatcgctcaactgaaattgaaagccaacatggagattggtaccaacaa 40147091  T
Q  475 aatatcttcccttcaagcactttttgcacacctttg 510  Q
    |||||| ||||| ||| |||||||| |||| |||||    
T  40147092 aatatcatccctccaatcactttttacacatctttg 40147127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 8103343 - 8103300
Alignment:
Q  22 caactgagaacacttgtgtaggtgacatacttggatgcacctat 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8103343 caactgagaacacttgtgtaggtgacatacttggatgcacctat 8103300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 40146646 - 40146683
Alignment:
Q  27 gagaacacttgtgtaggtgacatacttggatgcaccta 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40146646 gagaacacttgtgtaggtgacatacttggatgcaccta 40146683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 74 - 372
Target Start/End: Complemental strand, 7607014 - 7606716
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 173  Q
    ||||| |||||||| ||| |||||||||| || || ||| | || ||| |||||||||| || || |||||||   | || |||||||| || ||||| |    
T  7607014 aactatgaaggcacgtcaaaaccattgttggctgttcaaataacggagctagttgacggtattttcattggttgctccttcaaccatgttgtcgttgacg 7606915  T
Q  174 gaacttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttcc 273  Q
    |||  || |  ||| ||||||| ||||| ||||||||||| ||||| ||| ||||| |  ||||||||||||||| ||||||||| || || ||||||||    
T  7606914 gaaagtccgtgtggcatttcatcaattcatgggctgaaatatcacgcggttgttgtggtgatcaaatatccaaacccccaacactagagcgttggtttcc 7606815  T
Q  274 agatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaact 372  Q
    | |||||||||||| ||||||||||||||| ||||||| | ||| ||||||||| || | || || ||||||||||||||| |||||| | ||||||||    
T  7606814 aaatggtattcaacttcccatacgatttcctttcactacggagcaacaaaataatcactgtgatgagttgagtttttcatcgtctaatgaggaaaaact 7606716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 76 - 303
Target Start/End: Complemental strand, 7629397 - 7629170
Alignment:
Q  76 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatgga 175  Q
    |||||||||||| ||| |||||||||| || || ||||| || ||| ||||||||||  ||||||||||||  || || |||||||| |||||||| |||    
T  7629397 ctacgaaggcacgtcaaaaccattgttggctgttcaagtaacggagctagttgacggtgtctttattggttgcacattcaaccatgttgttgttgacgga 7629298  T
Q  176 acttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccag 275  Q
    |  || |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| ||||  ||||||  |||||| |||||||||     
T  7629297 aagtccgtgtggcatttcatcaattcatgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacatctgaacgttggtttccaa 7629198  T
Q  276 atggtattcaacgtcccatacgatttcc 303  Q
    |||||||||||| |||||||||||||||    
T  7629197 atggtattcaacttcccatacgatttcc 7629170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 80 - 354
Target Start/End: Complemental strand, 7637839 - 7637565
Alignment:
Q  80 gaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaactt 179  Q
    |||||||||||| |||||||||| || || ||||| || ||| |||||||||| || || |||||||   | ||||||||||| || ||||| ||||  |    
T  7637839 gaaggcacatcaaaaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagt 7637740  T
Q  180 cggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatgg 279  Q
    | |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || ||||||||| ||||    
T  7637739 ccgtgtggcatttcatcaattcctgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaaatgg 7637640  T
Q  280 tattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatc 354  Q
    | ||||||| || ||||||||||| ||||||  | ||| ||||||| | || |||| | ||||||||||||||||    
T  7637639 tgttcaacggcctatacgatttcctttcactttggagcaacaaaatgatcactctgataggttgagtttttcatc 7637565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 74 - 372
Target Start/End: Original strand, 7655481 - 7655776
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 173  Q
    |||||||||||||||||| |||||||||| || || ||||| || ||| |||||||||||||||| ||||| |||| ||| |||||||| || | ||| |    
T  7655481 aactacgaaggcacatcaaaaccattgttggctgttcaagtcacggagctagttgacggcatcttcattggctttaatttcaaccatgtcgtagctgacg 7655580  T
Q  174 gaacttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttcc 273  Q
    ||   ||  | ||| ||||||| ||||||||||||||||| ||||   ||||||||    |||||||||| ||   |||||| || || || ||||||||    
T  7655581 gacagtccacgtggcatttcatcaattcgtgggctgaaatgtcac---gtggttgtcatcatcaaatatctaactccccaacgctggagcgttggtttcc 7655677  T
Q  274 agatggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatcatctaataacgaaaaact 372  Q
    | |||| |||||||| || ||||||||||| || ||||   ||| |||||| || || |||| |||||| |||||||| || ||| || ||||||||||    
T  7655678 aaatggaattcaacgacctatacgatttcctttaactatagagccacaaaagaatcactctgatgggttaagtttttcgtcttctgatgacgaaaaact 7655776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 76 - 303
Target Start/End: Complemental strand, 7616008 - 7615781
Alignment:
Q  76 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatgga 175  Q
    |||||||||||| ||| |||| ||||| || || ||||| || ||| |||||||||| || ||||||||||   | || |||||||| || ||||| |||    
T  7616008 ctacgaaggcacctcaaaaccgttgttggcagttcaagtaacggagctagttgacggtatttttattggttgctcgttcaaccatgttgtcgttgacgga 7615909  T
Q  176 acttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccag 275  Q
       || |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || |||||||||     
T  7615908 gagtctgtgtggcatttcatcaattcatgggctgaaatatcacgtagttgttgtcatcatcaaatatctaaacccccaacactagagcgttggtttccaa 7615809  T
Q  276 atggtattcaacgtcccatacgatttcc 303  Q
    ||||| ||||||  ||||||||||||||    
T  7615808 atggtgttcaacagcccatacgatttcc 7615781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 7399248 - 7399159
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtg 163  Q
    ||||||||||| |||||||||||| |  |||| || ||||| ||||||||| | || || ||||| |||||||||||  |||||||||||    
T  7399248 aactacgaagggacatcacaaccactacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttacaattaaccatgtg 7399159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 7637534 - 7637486
Alignment:
Q  400 taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa 448  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||    
T  7637534 taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa 7637486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 39076010 - 39075927
Alignment:
Q  81 aaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtgg 164  Q
    |||||||||||||||||||  |||| || ||||| ||||||||| | || || ||||| ||||||||| |  ||||||||||||    
T  39076010 aaggcacatcacaaccattacttgcagtacaagtaacagagttaatcgatggtatcttcattggttttgcaattaaccatgtgg 39075927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 430
Target Start/End: Complemental strand, 7606703 - 7606673
Alignment:
Q  400 taggttatttcatttcacaaaggagaaaatc 430  Q
    |||||||||||||||||||||||||||||||    
T  7606703 taggttatttcatttcacaaaggagaaaatc 7606673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 74 - 303
Target Start/End: Complemental strand, 6501285 - 6501060
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 173  Q
    ||||||||||||| |||| |||||||| |||| |||||||| ||||||||||||| |||  |||||||||| ||||  || |||||||||||   || ||    
T  6501285 aactacgaaggcatatcaaaaccattgcttgcagtgcaagtgacagagttagttggcggtgtctttattgggtttagattcaaccatgtggtcactggtg 6501186  T
Q  174 gaacttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttcc 273  Q
    |||  ||    ||| |||| || | ||| ||||||||||||||||||||| |||||   ||||||||||||||||||||| |||| ||||| | ||||||    
T  6501185 gaaagtccatgtggcattttatcagttcctgggctgaaatttcacgtggttgttgt---aatcaaatatccaaactcccatcactagaacg-ttgtttcc 6501090  T
Q  274 agatggtattcaacgtcccatacgatttcc 303  Q
    | ||| |||||| ||| |||||||||||||    
T  6501089 aaatgatattcagcgttccatacgatttcc 6501060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 11969686 - 11969610
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttac 150  Q
    ||||| ||||| |||||| | |||||| |||| || ||||| |||||||||||||| |||||||| ||||| |||||    
T  11969686 aactatgaagggacatcagagccattgcttgcagtccaagtaacagagttagttgatggcatcttcattggctttac 11969610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 76 - 350
Target Start/End: Original strand, 8935444 - 8935718
Alignment:
Q  76 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatgga 175  Q
    |||||||||||||||| |||||||||| || || ||||| || |||||| ||||||| || || |||||||   | |||||||| |  ||  |||| |||    
T  8935444 ctacgaaggcacatcaaaaccattgttggcagttcaagtaactgagttaattgacggtattttcattggttgctcatttaaccacgctgtcattgacgga 8935543  T
Q  176 acttcggcatggtatttcattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccag 275  Q
    |  || |  ||| ||||||| ||||| ||||||||||| |||||| || |||||    |||||||||| ||||  |||||||| ||||| |||||||| |    
T  8935544 aagtctgtgtggcatttcatcaattcttgggctgaaatctcacgtagttgttgtcatcatcaaatatctaaacctccaacactagaacgttggtttccgg 8935643  T
Q  276 atggtattcaacgtcccatacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagttttt 350  Q
    ||||| ||||||| || ||||||||||| ||||||  | ||| |||||| || || |||| ||||||||||||||    
T  8935644 atggtgttcaacggccaatacgatttcctttcactttggagcaacaaaagaatcactctgatgggttgagttttt 8935718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 93 - 354
Target Start/End: Original strand, 8910526 - 8910783
Alignment:
Q  93 aaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatggaacttcggcatggtattt 192  Q
    |||||||||| || || ||||| || ||| |||||||||| || || |||||||   | ||||||||||| || ||||| ||||  || |  ||| ||||    
T  8910526 aaccattgttggcagttcaagtaacggagctagttgacggtattttcattggttgctcatttaaccatgttgtcgttgacggaaagtccgtgtggcattt 8910625  T
Q  193 cattaattcgtgggctgaaatttcacgtggtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacgtccc 292  Q
    ||||||||| ||||||||||| |||||| || |||||    |||||||||| |||| ||||||||| || || ||||||||| |     ||||||| ||     
T  8910626 cattaattcctgggctgaaatctcacgtagttgttgtcattatcaaatatctaaacccccaacactagagcgttggtttccaaa----gttcaacggcct 8910721  T
Q  293 atacgatttcccttcactaagaagctacaaaataaccaatctggtgggttgagtttttcatc 354  Q
    ||||||||||| ||||||  | ||| ||||||  | || |||| ||||||||||||||||||    
T  8910722 atacgatttcctttcactttggagcaacaaaaggatcactctgatgggttgagtttttcatc 8910783  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 8910814 - 8910862
Alignment:
Q  400 taggttatttcatttcacaaaggagaaaatctctcaattgaaattgaaa 448  Q
    |||||||||||||||||||||||||||||||   |||||||||| ||||    
T  8910814 taggttatttcatttcacaaaggagaaaatcctacaattgaaatcgaaa 8910862  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 8934503 - 8934573
Alignment:
Q  76 ctacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggtt 146  Q
    |||||||||||||||| |||||||||| || || ||||| || |||||| ||||||| || || |||||||    
T  8934503 ctacgaaggcacatcaaaaccattgttggcagttcaagtaacggagttaattgacggtattttcattggtt 8934573  T

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Target: scaffold0190 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 74 - 213
Target Start/End: Complemental strand, 5210 - 5071
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggttttacttttaaccatgtggttgttgatg 173  Q
    ||||||||||| ||||||||||||||  ||||  | ||||| || |||||||||||||||||||| ||||| || ||  ||||||| ||| |||||||||    
T  5210 aactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattggcttcacagttaaccacgtgattgttgatg 5111  T
Q  174 gaacttcggcatggtatttcattaattcgtgggctgaaat 213  Q
    | || |||   ||| ||||||| |||||||||||||||||    
T  5110 gtacgtcgttttggcatttcatcaattcgtgggctgaaat 5071  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 15190673 - 15190754
Alignment:
Q  222 gtggttgttgcaatcaaatatccaaactcccaacacttgaacgatggtttccagatggtattcaacgtcccatacgatttcc 303  Q
    |||||| |||| ||||||||||   ||  |||||||||||||| |  |||||| |||| |||||||||||||||||||||||    
T  15190673 gtggttcttgccatcaaatatctgtacctccaacacttgaacgtttatttccaaatggaattcaacgtcccatacgatttcc 15190754  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Complemental strand, 34174896 - 34174825
Alignment:
Q  74 aactacgaaggcacatcacaaccattgtttgccgtgcaagttacagagttagttgacggcatctttattggt 145  Q
    |||||| |||| ||||||||||||||| |||| || ||||| ||||||||| |||| || ||||| ||||||    
T  34174896 aactacaaaggtacatcacaaccattgcttgcagttcaagtaacagagttaattgatggtatcttcattggt 34174825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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