View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_37 (Length: 495)

Name: NF1740_low_37
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_37
NF1740_low_37
[»] chr1 (4 HSPs)
chr1 (253-489)||(33619355-33619606)
chr1 (446-489)||(28173141-28173184)
chr1 (253-333)||(31567915-31567995)
chr1 (253-301)||(33620294-33620342)
[»] chr5 (4 HSPs)
chr5 (253-489)||(41786486-41786737)
chr5 (253-318)||(42910027-42910092)
chr5 (253-301)||(41785749-41785797)
chr5 (253-302)||(13449939-13449988)
[»] chr7 (1 HSPs)
chr7 (116-211)||(6805066-6805166)
[»] chr8 (2 HSPs)
chr8 (253-341)||(10367007-10367095)
chr8 (251-299)||(10366038-10366086)
[»] chr6 (1 HSPs)
chr6 (250-336)||(35177298-35177384)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 253 - 489
Target Start/End: Original strand, 33619355 - 33619606
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagttnnnnnnnnnn 352  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              
T  33619355 ggtggcatttacaatgcacaagacacaaatttgtgcatgatacacaaatatggtttggaaggacagctggcagttgatcacctgctagttaaaaaactaa 33619454  T
Q  353 nnnnntcccaaatcatattttaatatattaatgcagaatatca-----nnnnnnnnctaattaattttccattttccaaatacacccatgctttgaaa-- 445  Q
         ||||||||||||||||||||||||||||||||||||||              |||||||||||||| ||| || |||||||  ||||||||||      
T  33619455 aaaaatcccaaatcatattttaatatattaatgcagaatatcagatatttgtttttttaattaattttccagttttcatatacacctctgctttgaaaaa 33619554  T
Q  446 --------atgcctctattttcttcatattttcagatatgcattcatctcac 489  Q
            ||||||||||||||||||||||||||||||||||||||| ||||    
T  33619555 caatctgtatgcctctattttcttcatattttcagatatgcattcatttcac 33619606  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 489
Target Start/End: Original strand, 28173141 - 28173184
Alignment:
Q  446 atgcctctattttcttcatattttcagatatgcattcatctcac 489  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  28173141 atgcctctattttcttcatattttcagatatgcattcatttcac 28173184  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 333
Target Start/End: Complemental strand, 31567995 - 31567915
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcac 333  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| ||||||  ||  |||||||| |||| ||| |||||    
T  31567995 ggtggcatttacaatgcacaagacacaaatttgtgcatcatacacgaatatggcttataaggacagttggcggttcatcac 31567915  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 33620342 - 33620294
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaat 301  Q
    ||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  33620342 ggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaat 33620294  T

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Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 253 - 489
Target Start/End: Complemental strand, 41786737 - 41786486
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagttnnnnnnnnnn 352  Q
    ||||| ||||| ||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||              
T  41786737 ggtggtatttacaatgcacaagacacaaatttatgcatgatacacaaatatggtttggaaggacagctggcagttgatcacctgctagttaaaaaactaa 41786638  T
Q  353 nnnnntcccaaatcatattttaatatattaatgcagaatatca-----nnnnnnnnctaattaattttccattttccaaatacacccatgctttgaaa-- 445  Q
         ||||||||||||||||||||||||||||||||||||||             ||||||||||||||| ||| || |||||||  ||||||||||      
T  41786637 aaaaatcccaaatcatattttaatatattaatgcagaatatcagatatttgtttctctaattaattttccagttttcatatacacctctgctttgaaaaa 41786538  T
Q  446 --------atgcctctattttcttcatattttcagatatgcattcatctcac 489  Q
            ||||||||||||||||||||||||||||||||||||||| ||||    
T  41786537 caatctgtatgcctctattttcttcatattttcagatatgcattcatttcac 41786486  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 42910092 - 42910027
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacag 318  Q
    |||||||||||  |||||||| |||||||||||||||  |||||||| |||| |||||||||||||    
T  42910092 ggtggcatttagcatgcacaaaacataaatttgtgcaccatacacaagtatggtttggaaggacag 42910027  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 41785749 - 41785797
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaat 301  Q
    ||||||||||| ||||||||||||| |||||||||||| || |||||||    
T  41785749 ggtggcatttacaatgcacaagacacaaatttgtgcatcatgcacaaat 41785797  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 13449939 - 13449988
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaata 302  Q
    |||||| |||| ||||||||||   |||||||||||||||||||||||||    
T  13449939 ggtggcgtttacaatgcacaagtattaaatttgtgcatgatacacaaata 13449988  T

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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 211
Target Start/End: Complemental strand, 6805166 - 6805066
Alignment:
Q  116 gttacttattagactgag--gtagtggctactgaaggtgaatattcgttgttt---atttacacggatactgttgtcttggatatatgaattttgtaata 210  Q
    ||||||| ||||||||||  ||| || |||||||||||||||||||||| |||   |||||||||||||||||| |||||||||||||||||||||||||    
T  6805166 gttacttcttagactgagaggtactgactactgaaggtgaatattcgtttttttttatttacacggatactgttatcttggatatatgaattttgtaata 6805067  T
Q  211 t 211  Q
    |    
T  6805066 t 6805066  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 10367095 - 10367007
Alignment:
Q  253 ggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctgctagt 341  Q
    ||||||||||| ||| ||||||||| |||||||||||||||||| || |||  |||| ||||||||||||||||| |||||||||||||    
T  10367095 ggtggcatttacaatacacaagacacaaatttgtgcatgatacataagtattgtttgaaaggacagctggcagttcatcacctgctagt 10367007  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 10366038 - 10366086
Alignment:
Q  251 tcggtggcatttataatgcacaagacataaatttgtgcatgatacacaa 299  Q
    ||||||||||||| ||||||||||||| |||||||||||| ||||||||    
T  10366038 tcggtggcatttacaatgcacaagacacaaatttgtgcatcatacacaa 10366086  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 336
Target Start/End: Complemental strand, 35177384 - 35177298
Alignment:
Q  250 ctcggtggcatttataatgcacaagacataaatttgtgcatgatacacaaatatgatttggaaggacagctggcagttgatcacctg 336  Q
    ||||||||||||||  ||| |||||||||||||||||| || ||| |||| ||||||||||||| |||| |||| ||| || |||||    
T  35177384 ctcggtggcatttagcatgaacaagacataaatttgtgtatcatatacaagtatgatttggaagaacaggtggctgttaataacctg 35177298  T

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