View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_4 (Length: 790)
Name: NF1740_low_4
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 636; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 17 - 782
Target Start/End: Original strand, 31775333 - 31776117
Alignment:
| Q |
17 |
accaataagaaactactttactatctctggaatggaattctatgtcgtcatagaaactctggatcaacgcatttggaa-----------------ttaaa |
99 |
Q |
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||||||||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||| ||| |||||||||||| ||||| |
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| T |
31775333 |
accaataagaaactattttactatctccggaatggaattccatgtcgtcataaaaactctgcatccacgcatttggaagatcagtagttgtccaattaaa |
31775432 |
T |
|
| Q |
100 |
aacaaacaattttcaagacaaaagttttacattgagctatttaacatgtgttcttatgacacatgttagcatttattttatttttatggcttgaagatca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31775433 |
aacaaacaattttcaagacaaaagttttacattgagctatttaacatgtgttcttatgacacatgttagcatttatcttatttttatggcttgaagatca |
31775532 |
T |
|
| Q |
200 |
tcttatttaacccaaatacttgcttagggtgtgcttggaccaacatatcagaattgtttatcatttggacaattgctctttaaacatctcaaaattgctc |
299 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
31775533 |
tcttatttaacccaaatacttgcttagtgtgtgcttggaccaacatatcagaattgtttatcatttggacaattgctttttagacatctcaaaattgctc |
31775632 |
T |
|
| Q |
300 |
actttattaaaaatacattgtcgaaagttacaaccaaatcgatttttaacacataaaaagaaccgatcaagagttacaatccgatcatgaatgaaattca |
399 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31775633 |
actttactaaaaatatattgtcgaaagttacaaccaaatcgatttttaacacataaaaagagccgatcaagagttacaatccgatcatgaacgaaattca |
31775732 |
T |
|
| Q |
400 |
gatgtctaaagagcaattgtctatcttttgcttatacactaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcaca |
499 |
Q |
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| T |
31775733 |
gatgtctaaagagcaattgtctatcttttgcgtatacactaaccctattcatataacctgcaagtttaagcgacccgattaaaagagattgactagcacg |
31775832 |
T |
|
| Q |
500 |
gataccctcgtacgtagcttaggttttattctcacaa---tattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaa |
596 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31775833 |
gatatcctcgtacgtagcttaggttttattctcacaatattattataacacacacgggtaagtctgtgttcaaggttctattattggttagcacattaaa |
31775932 |
T |
|
| Q |
597 |
ttaaaataaagtaacaagtgaaaaatcttatttttcccagaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacact |
696 |
Q |
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| T |
31775933 |
ttaaaataaagtaacaagtgaaaaatctta-ttttcccagaacatacatacattgatgcatttgtgccccccacaacttctcattttgtagcatgacact |
31776031 |
T |
|
| Q |
697 |
tggattttttggtttgtcttcatatgttgtctttctgaaagcaatcttcctctcattatcaaactttgtcctacgaatcctatgct |
782 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
31776032 |
tggattttttggtttgtcttcatatgttgtctttctgaaagcaatcttcctctcattatcaaactctgtcctacgaatcctatgct |
31776117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 314
Target Start/End: Complemental strand, 19986991 - 19986940
Alignment:
| Q |
263 |
tttggacaattgctctttaaacatctcaaaattgctcactttattaaaaata |
314 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||| |||||| |
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| T |
19986991 |
tttggacaattgctatttaggcatctcaaaattgctcactttattgaaaata |
19986940 |
T |
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