View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_40 (Length: 463)

Name: NF1740_low_40
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_40
NF1740_low_40
[»] chr4 (1 HSPs)
chr4 (17-448)||(11118694-11119125)
[»] chr5 (12 HSPs)
chr5 (85-357)||(42124146-42124418)
chr5 (95-193)||(34232000-34232098)
chr5 (17-63)||(34239605-34239651)
chr5 (85-193)||(34239742-34239850)
chr5 (17-63)||(42129884-42129930)
chr5 (157-204)||(41445148-41445195)
chr5 (61-184)||(42129694-42129817)
chr5 (17-63)||(42124509-42124555)
chr5 (157-201)||(41432340-41432384)
chr5 (161-196)||(41571271-41571306)
chr5 (105-186)||(41712756-41712837)
chr5 (389-425)||(42124078-42124114)
[»] chr6 (2 HSPs)
chr6 (91-420)||(25522213-25522542)
chr6 (21-63)||(25522074-25522116)
[»] chr3 (2 HSPs)
chr3 (85-192)||(8523841-8523948)
chr3 (17-63)||(8524039-8524085)
[»] chr2 (2 HSPs)
chr2 (95-208)||(12249269-12249382)
chr2 (173-324)||(32681314-32681465)


Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 11119125 - 11118694
Alignment:
Q  17 ttaaatgacaacttactaaatggaacaattccttcctccttgttatcatattccttagacacactagttctaagcaacaacaggctacaaggaaatattc 116  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  11119125 ttaaatgacaacttgataaatggaacaattccttcctccttgttatcatattccttagacacactagttctaagcaacaaccggctacaaggcaatattc 11119026  T
Q  117 cagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctga 216  Q
    ||||||||||||||| ||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119025 cagaatgcattttcagcctaacaaagctagatgaactagatctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctccaaatttgctga 11118926  T
Q  217 cctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactgaaattatct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11118925 cctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagttttactaacctacaaatactcaaattatct 11118826  T
Q  317 tctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11118825 tctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaacaaacttaatggaagaatgcccaatt 11118726  T
Q  417 ggtttcttggaaatatttattggcaatctgtg 448  Q
    ||||||||||||||||||||||||||||||||    
T  11118725 ggtttcttggaaatatttattggcaatctgtg 11118694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 85 - 357
Target Start/End: Complemental strand, 42124418 - 42124146
Alignment:
Q  85 tctaagcaacaacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgtt 184  Q
    |||||||||||||||||||||||| |||||||| || | |||||||||||| ||| | |||  | |  ||  |||||| || ||| ||||||||||| ||    
T  42124418 tctaagcaacaacaggctacaaggcaatattcctgagtccattttcaacctaacaaaactatctcacttaattctatcttcgaacgacttgagtggtctt 42124319  T
Q  185 gtcaattttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttata 284  Q
    ||||||||| |||||||||||||| || |    || ||||| |||||||||||| |||||||||| || || ||||| || ||||||||||||| |||||    
T  42124318 gtcaattttcaactcttctccaaacttacatgtctagaaatgttatccctttcatggaatagtcaattatctctaaattttgaatccaatgtcaattata 42124219  T
Q  285 gttttactaacctacaaatactgaaattatcttctgtcaacttgatcgaatttcacaacttacaaggagaatt 357  Q
    ||||| ||| ||||||| || || |||| ||||||||||| |||||| |||| || || ||||||||||||||    
T  42124218 gtttttctagcctacaagtattggaattgtcttctgtcaatttgatcaaattccataatttacaaggagaatt 42124146  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 95 - 193
Target Start/End: Original strand, 34232000 - 34232098
Alignment:
Q  95 aacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgttgtcaatttt 193  Q
    |||| ||||||||| |||||||||||||  |||||||||||   | || ||  || | |||||||||||||||||||||||||||||||||||||||||    
T  34232000 aacaagctacaaggcaatattccagaatcaattttcaaccttgtaaatttagctgtattagatctatcatcaaacaacttgagtggtgttgtcaatttt 34232098  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 34239605 - 34239651
Alignment:
Q  17 ttaaatgacaacttactaaatggaacaattccttcctccttgttatc 63  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  34239605 ttaaatgacaacttgctaaatggaacaattccttcctccttgttatc 34239651  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 193
Target Start/End: Original strand, 34239742 - 34239850
Alignment:
Q  85 tctaagcaacaacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgtt 184  Q
    |||| ||||||||| |||||||||  |||||||| | |  |||||||||||  || | |||| |  ||||  ||||||||||||||||||||||||||||    
T  34239742 tctatgcaacaacaagctacaaggtgatattccaaattcaattttcaaccttgcaaacctaattacactatgtctatcatcaaacaacttgagtggtgtt 34239841  T
Q  185 gtcaatttt 193  Q
    |||||||||    
T  34239842 gtcaatttt 34239850  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 42129930 - 42129884
Alignment:
Q  17 ttaaatgacaacttactaaatggaacaattccttcctccttgttatc 63  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||    
T  42129930 ttaaatgacaacttgttaaatggaacaattccttcctccttgttatc 42129884  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 41445195 - 41445148
Alignment:
Q  157 tctatcatcaaacaacttgagtggtgttgtcaattttaaactcttctc 204  Q
    |||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  41445195 tctatcttcaaataacttgagtggttttgtcaattttaaactcttctc 41445148  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 184
Target Start/End: Complemental strand, 42129817 - 42129694
Alignment:
Q  61 atcatattccttagacacactagttctaagcaacaacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatcta 160  Q
    ||||||||||||| | |  |||| |||||||  ||||| ||||||||| ||||||||| |||  |||||||||||  || |  ||| |   |||||||||    
T  42129817 atcatattccttaaagaagctagatctaagcggcaacaagctacaaggcaatattccaaaatctattttcaaccttgcaaacttaactttgctagatcta 42129718  T
Q  161 tcatcaaacaacttgagtggtgtt 184  Q
    ||||||||||||||||||| ||||    
T  42129717 tcatcaaacaacttgagtgatgtt 42129694  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 42124555 - 42124509
Alignment:
Q  17 ttaaatgacaacttactaaatggaacaattccttcctccttgttatc 63  Q
    ||||| |||||||| |||||||||||| |||||||||||||||||||    
T  42124555 ttaaaagacaacttgctaaatggaacagttccttcctccttgttatc 42124509  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 41432384 - 41432340
Alignment:
Q  157 tctatcatcaaacaacttgagtggtgttgtcaattttaaactctt 201  Q
    |||||| ||||| |||||||||||| |||||||||||||||||||    
T  41432384 tctatcttcaaataacttgagtggttttgtcaattttaaactctt 41432340  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 196
Target Start/End: Original strand, 41571271 - 41571306
Alignment:
Q  161 tcatcaaacaacttgagtggtgttgtcaattttaaa 196  Q
    ||||||||||||||||||||| ||||||||||||||    
T  41571271 tcatcaaacaacttgagtggtattgtcaattttaaa 41571306  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 41712756 - 41712837
Alignment:
Q  105 aaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgttgt 186  Q
    |||| |||||||||||||  |||||||| || | | | |||| |  |||||| ||||||||||||||||| |||||||||||    
T  41712756 aaggcaatattccagaatcaattttcaaacttataaacctaactagactagacctatcatcaaacaacttcagtggtgttgt 41712837  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 389 - 425
Target Start/End: Complemental strand, 42124114 - 42124078
Alignment:
Q  389 aacaaacttaatggaagaatgcccaattggtttcttg 425  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  42124114 aacaaacttcatggaagaatgcccaattggttacttg 42124078  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 91 - 420
Target Start/End: Original strand, 25522213 - 25522542
Alignment:
Q  91 caacaacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgttgtcaat 190  Q
    |||||||| ||||||||| ||||||||||||| ||||||||| || ||| | |||| | | |||  |||||| | |||| ||||||||||| ||||||||    
T  25522213 caacaacaagctacaaggcaatattccagaatccattttcaatcttacaaacctaactaatctaattctatctttaaacgacttgagtggttttgtcaat 25522312  T
Q  191 tttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatccaatgtcacttatagtttta 290  Q
    ||| ||| ||| |||||| || |  | ||   | |||||||||||||| |||||| ||| ||||||||||| |||||||||||||||| | ||||| ||     
T  25522313 tttcaacacttttccaaacttacaaatcttcgatttttatccctttcatggaatactcaattgtcactaaacttcgaatccaatgtcaatcatagtgttt 25522412  T
Q  291 ctaacctacaaatactgaaattatcttctgtcaacttgatcgaatttcacaacttacaaggagaatttccaagtttgtcacatctggatctttccaaaaa 390  Q
     | ||||  |   | || || | ||||| || || |||||| |||||| ||| || |||||| |||| || | ||||    |||| ||||||||||| ||    
T  25522413 tttaccttgacgaattggaactgtcttccgtaaatttgatcaaatttcccaaattgcaaggaaaattcccgaatttggattatcttgatctttccaataa 25522512  T
Q  391 caaacttaatggaagaatgcccaattggtt 420  Q
    ||||||| ||||||||||||||||||||||    
T  25522513 caaacttgatggaagaatgcccaattggtt 25522542  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 25522074 - 25522116
Alignment:
Q  21 atgacaacttactaaatggaacaattccttcctccttgttatc 63  Q
    ||||||||||  |||||||||||||||||||||| ||||||||    
T  25522074 atgacaacttgttaaatggaacaattccttcctctttgttatc 25522116  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 8523948 - 8523841
Alignment:
Q  85 tctaagcaacaacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgtt 184  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||||||||||  || | |||| |  ||||||||||||||||||||||||||||||||||    
T  8523948 tctaagtaacaacaggctacaaggcaatattccagaatccattttcaaccttgcaaacctaagtagactagatctatcatcaaacaacttgagtggtgtt 8523849  T
Q  185 gtcaattt 192  Q
    ||||||||    
T  8523848 gtcaattt 8523841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 8524085 - 8524039
Alignment:
Q  17 ttaaatgacaacttactaaatggaacaattccttcctccttgttatc 63  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  8524085 ttaaatgacaacttgctaaatggtacaattcctccctccttgttatc 8524039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 208
Target Start/End: Complemental strand, 12249382 - 12249269
Alignment:
Q  95 aacaggctacaaggaaatattccagaatgcattttcaacctgacatatctaaatgaactagatctatcatcaaacaacttgagtggtgttgtcaatttta 194  Q
    |||| ||||||||| ||||||||| ||| |||||||||||| |||   |||| |  ||||||| ||||||||||||||||||||||||||||  |||||     
T  12249382 aacaagctacaaggcaatattccaaaatccattttcaaccttacaaccctaactagactagatttatcatcaaacaacttgagtggtgttgttgattttc 12249283  T
Q  195 aactcttctccaaa 208  Q
    ||||||| ||||||    
T  12249282 aactcttttccaaa 12249269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 173 - 324
Target Start/End: Original strand, 32681314 - 32681465
Alignment:
Q  173 ttgagtggtgttgtcaattttaaactcttctccaaatttgctgacctggaaattttatccctttcaaggaatagtcagttgtcactaaaattcgaatcca 272  Q
    ||||||||| ||||||||||| |||||||||||||| || |  | ||  |  || |||| |||||| |||||||||| ||||||||||| || |||||||    
T  32681314 ttgagtggtcttgtcaattttcaactcttctccaaacttacacatctccactttctatctctttcatggaatagtcaattgtcactaaactttgaatcca 32681413  T
Q  273 atgtcacttatagttttactaacctacaaatactgaaattatcttctgtcaa 324  Q
    |||||| ||||| |||| || ||||||||| | || |||| |||||| ||||    
T  32681414 atgtcagttatacttttccttacctacaaacattggaattgtcttctatcaa 32681465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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