View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_41 (Length: 463)
Name: NF1740_low_41
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_41 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 42576852 - 42576406
Alignment:
| Q |
1 |
acggaaacccctttttcttcatcttctttcgtgttaaacaagnnnnnnngttctcaattcccggttgctttttctaaacccctactaaaacctcttctat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42576852 |
acggaaacccctttttcttcatcttctttcgtgttaaacaagtttttttgttctcaattcccggttgctttttctaaacccctactaaaacatcttctat |
42576753 |
T |
|
| Q |
101 |
cattttgtttagattttgacttttttgacatttgtattatcnnnnnnntaaattgacattttctagacacaaataattaagtaaacgaaaaacaaaattt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42576752 |
cattttgtttagattttgacttttttgacatttgtattatcaaaaaaataaattgacattttctagacacaaataattaagtaaacgaaaaacaaa-ttt |
42576654 |
T |
|
| Q |
201 |
attttatacatgacttaaccaaacccagttttactccctaaatttatcatatgtact---ttttaggaaaccaccgtaattaagtaccaatacatattaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42576653 |
attttatacatgacttaaccaaacccagttttactccctaaatttatcatatgtactattttttaggaaaccac-gtaattaagtaccaatacatattaa |
42576555 |
T |
|
| Q |
298 |
ttttgtttctttcaataaaaatacatattaatttggttgttaaggatttgaatgctacgttgtaagaacgtgagtttaactttcattgttaccgttaaaa |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42576554 |
ctttgtttctttcaataaaaatacatattaatttgattgttaaggatttgaatgctacgttgtaagaacgtgagtttaactttcattgttagcgttaaaa |
42576455 |
T |
|
| Q |
398 |
tcttgttggtagaccatatgtaagtacctctttgagccttatgcactgccatattctt |
455 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42576454 |
tcttgttggtag---------aagtacctctttgagccttatgcactgccataatctt |
42576406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42569807 - 42569710
Alignment:
| Q |
1 |
acggaaacccctttttcttcatcttctttcgtgttaaacaagnnnnnnngttctcaattcccggttgctttttctaaacccctactaaaacctcttctat |
100 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| ||||||||||||| || |
|
|
| T |
42569807 |
acggaaacccttttttctttatcttctttcgtgtt---caagtttttt-gttctcaattctcggttgctttttctaaagccctgctaaaacctcttccat |
42569712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 42593708 - 42593660
Alignment:
| Q |
50 |
gttctcaattcccggttgctttttctaaac-ccctactaaaacctcttc |
97 |
Q |
| |
|
||||||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
42593708 |
gttctcacttcccggttgcttttactaaacaccctactaaaacctcttc |
42593660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 42569408 - 42569360
Alignment:
| Q |
394 |
aaaatcttgttggtagaccatatgtaagtacctctttgagccttatgca |
442 |
Q |
| |
|
|||||||||||||| || || ||||||||||||| ||||||||||||| |
|
|
| T |
42569408 |
aaaatcttgttggtcaacaatttgtaagtacctctctgagccttatgca |
42569360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University