View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_47 (Length: 449)

Name: NF1740_low_47
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_47
NF1740_low_47
[»] chr8 (41 HSPs)
chr8 (51-439)||(10331227-10331616)
chr8 (302-419)||(36402942-36403060)
chr8 (301-407)||(26132062-26132169)
chr8 (299-400)||(44376653-44376754)
chr8 (76-147)||(8412365-8412438)
chr8 (74-147)||(17693456-17693531)
chr8 (72-144)||(15344477-15344551)
chr8 (72-144)||(15433542-15433616)
chr8 (72-144)||(15524846-15524920)
chr8 (72-147)||(14544738-14544815)
chr8 (81-195)||(14585855-14585974)
chr8 (72-147)||(41060106-41060183)
chr8 (72-182)||(43833801-43833916)
chr8 (72-147)||(45445654-45445731)
chr8 (85-147)||(24099099-24099163)
chr8 (74-147)||(471007-471082)
chr8 (85-143)||(9501913-9501972)
chr8 (82-147)||(16928600-16928667)
chr8 (63-147)||(14906748-14906834)
chr8 (72-195)||(18890491-18890619)
chr8 (72-147)||(3673610-3673687)
chr8 (72-147)||(7677126-7677203)
chr8 (72-147)||(7883084-7883161)
chr8 (164-201)||(15344564-15344601)
chr8 (164-201)||(15433629-15433666)
chr8 (164-201)||(15524933-15524970)
chr8 (72-147)||(23230812-23230889)
chr8 (72-139)||(29617125-29617194)
chr8 (72-147)||(29777401-29777478)
chr8 (72-147)||(30568164-30568241)
chr8 (72-147)||(31013451-31013528)
chr8 (72-147)||(44099761-44099838)
chr8 (72-112)||(5046922-5046962)
chr8 (72-184)||(8867974-8868094)
chr8 (85-147)||(9619182-9619246)
chr8 (85-147)||(11464366-11464430)
chr8 (85-147)||(11725875-11725939)
chr8 (64-127)||(27498230-27498294)
chr8 (79-149)||(34611993-34612065)
chr8 (72-127)||(41896686-41896742)
chr8 (85-147)||(43192172-43192236)
[»] chr1 (41 HSPs)
chr1 (301-419)||(5490522-5490641)
chr1 (303-419)||(13416252-13416369)
chr1 (64-112)||(46399132-46399180)
chr1 (85-147)||(7997981-7998045)
chr1 (63-147)||(5324384-5324469)
chr1 (72-147)||(12635340-12635417)
chr1 (68-143)||(31919155-31919232)
chr1 (63-147)||(7342892-7342978)
chr1 (63-147)||(9687030-9687116)
chr1 (85-141)||(33816999-33817057)
chr1 (85-141)||(33876469-33876527)
chr1 (63-147)||(50148540-50148626)
chr1 (72-147)||(7337508-7337585)
chr1 (299-419)||(31109249-31109370)
chr1 (73-147)||(11462327-11462403)
chr1 (90-147)||(9172687-9172746)
chr1 (90-147)||(9180669-9180728)
chr1 (303-382)||(13415522-13415601)
chr1 (72-115)||(41994609-41994652)
chr1 (72-144)||(19061079-19061153)
chr1 (72-144)||(24583120-24583194)
chr1 (72-144)||(24583316-24583390)
chr1 (72-144)||(34412940-34413014)
chr1 (72-144)||(36775558-36775632)
chr1 (63-147)||(47133064-47133150)
chr1 (68-144)||(49627079-49627157)
chr1 (63-147)||(51872033-51872119)
chr1 (68-147)||(27456650-27456731)
chr1 (299-348)||(31116673-31116722)
chr1 (164-201)||(31692255-31692292)
chr1 (71-112)||(49648757-49648798)
chr1 (72-147)||(51373703-51373780)
chr1 (85-147)||(5701451-5701515)
chr1 (72-112)||(5984006-5984046)
chr1 (85-147)||(11454129-11454193)
chr1 (73-147)||(14489443-14489519)
chr1 (68-100)||(25564164-25564196)
chr1 (81-147)||(29738509-29738577)
chr1 (89-147)||(39927380-39927440)
chr1 (81-147)||(49504440-49504508)
chr1 (85-147)||(51868470-51868534)
[»] chr4 (43 HSPs)
chr4 (299-419)||(21281078-21281199)
chr4 (299-381)||(45141099-45141181)
chr4 (72-195)||(43853630-43853758)
chr4 (323-415)||(45140488-45140581)
chr4 (72-195)||(18935969-18936097)
chr4 (72-201)||(36161898-36162032)
chr4 (72-146)||(53811215-53811290)
chr4 (72-195)||(36194895-36195023)
chr4 (72-195)||(42032323-42032451)
chr4 (72-147)||(56040491-56040568)
chr4 (72-196)||(6155013-6155145)
chr4 (63-147)||(1532086-1532172)
chr4 (63-147)||(20569435-20569521)
chr4 (63-147)||(21090320-21090406)
chr4 (63-147)||(38706535-38706621)
chr4 (72-147)||(2520966-2521043)
chr4 (68-147)||(21662620-21662701)
chr4 (68-147)||(21671384-21671465)
chr4 (72-147)||(34024263-34024340)
chr4 (73-195)||(52933743-52933870)
chr4 (85-147)||(4644058-4644122)
chr4 (72-127)||(17949190-17949246)
chr4 (72-127)||(17953042-17953098)
chr4 (81-147)||(19896468-19896536)
chr4 (72-138)||(22806723-22806791)
chr4 (81-147)||(29966522-29966590)
chr4 (85-147)||(35348507-35348571)
chr4 (85-147)||(36204224-36204288)
chr4 (73-147)||(43095816-43095892)
chr4 (85-147)||(44947612-44947676)
chr4 (85-147)||(49410423-49410487)
chr4 (85-147)||(53616475-53616539)
chr4 (85-147)||(10359374-10359437)
chr4 (63-147)||(2115413-2115499)
chr4 (72-144)||(29960797-29960871)
chr4 (72-147)||(9178540-9178617)
chr4 (72-147)||(19853357-19853434)
chr4 (85-140)||(35261392-35261449)
chr4 (164-196)||(31891076-31891108)
chr4 (72-112)||(36184718-36184758)
chr4 (85-147)||(45227866-45227930)
chr4 (81-147)||(48257477-48257545)
chr4 (63-141)||(51318163-51318243)
[»] chr7 (28 HSPs)
chr7 (299-419)||(24874495-24874616)
chr7 (299-419)||(767146-767267)
chr7 (68-147)||(28407763-28407844)
chr7 (72-147)||(40993326-40993403)
chr7 (72-201)||(34899406-34899529)
chr7 (299-415)||(767887-768004)
chr7 (64-147)||(8001391-8001476)
chr7 (72-147)||(48316657-48316734)
chr7 (330-419)||(27917736-27917826)
chr7 (68-147)||(9977055-9977136)
chr7 (68-147)||(28044601-28044682)
chr7 (68-147)||(29617545-29617625)
chr7 (72-147)||(39171435-39171512)
chr7 (72-147)||(42978779-42978856)
chr7 (63-147)||(433516-433602)
chr7 (63-147)||(7640600-7640686)
chr7 (72-195)||(35133116-35133244)
chr7 (282-376)||(41965738-41965832)
chr7 (312-369)||(21975714-21975771)
chr7 (81-140)||(35261481-35261542)
chr7 (72-139)||(46339229-46339298)
chr7 (64-144)||(46700196-46700277)
chr7 (64-112)||(3222986-3223034)
chr7 (72-112)||(13796811-13796851)
chr7 (90-148)||(19404601-19404661)
chr7 (89-147)||(24351177-24351237)
chr7 (76-112)||(33095850-33095886)
chr7 (85-147)||(38798963-38799027)
[»] scaffold0006 (1 HSPs)
scaffold0006 (327-419)||(285927-286020)
[»] chr3 (41 HSPs)
chr3 (299-420)||(43453449-43453571)
chr3 (301-419)||(14746819-14746938)
chr3 (299-379)||(42020844-42020924)
chr3 (72-196)||(16235592-16235721)
chr3 (350-419)||(35982556-35982626)
chr3 (72-147)||(4711648-4711725)
chr3 (72-147)||(6954541-6954618)
chr3 (72-195)||(7546781-7546910)
chr3 (312-400)||(41418783-41418871)
chr3 (72-146)||(20987602-20987677)
chr3 (299-382)||(43454117-43454199)
chr3 (82-147)||(44959818-44959885)
chr3 (63-147)||(4821963-4822049)
chr3 (72-195)||(8914878-8915006)
chr3 (63-147)||(30648544-30648630)
chr3 (63-147)||(50194180-50194266)
chr3 (72-194)||(14859656-14859777)
chr3 (72-147)||(32701657-32701734)
chr3 (72-147)||(40487491-40487568)
chr3 (72-147)||(45568290-45568367)
chr3 (299-379)||(14746051-14746131)
chr3 (72-146)||(21431779-21431855)
chr3 (85-147)||(25631351-25631415)
chr3 (85-147)||(36906307-36906371)
chr3 (81-147)||(52922962-52923030)
chr3 (85-142)||(38854866-38854925)
chr3 (72-144)||(53807706-53807780)
chr3 (68-147)||(7448759-7448840)
chr3 (68-147)||(7456901-7456982)
chr3 (72-147)||(9797379-9797456)
chr3 (72-147)||(21533654-21533731)
chr3 (81-144)||(27856340-27856405)
chr3 (72-147)||(40556868-40556945)
chr3 (90-196)||(53508406-53508517)
chr3 (72-147)||(54149157-54149234)
chr3 (85-147)||(3848744-3848808)
chr3 (72-147)||(29922223-29922299)
chr3 (72-147)||(29971376-29971452)
chr3 (72-127)||(42460915-42460971)
chr3 (85-147)||(46934824-46934888)
chr3 (72-112)||(52115903-52115943)
[»] chr6 (27 HSPs)
chr6 (303-419)||(709336-709452)
chr6 (299-419)||(10965240-10965361)
chr6 (299-415)||(2138487-2138603)
chr6 (352-439)||(24981022-24981109)
chr6 (72-147)||(30894767-30894843)
chr6 (68-147)||(26588317-26588398)
chr6 (64-147)||(67846-67931)
chr6 (72-147)||(9341496-9341573)
chr6 (68-147)||(21426531-21426612)
chr6 (322-379)||(24980373-24980430)
chr6 (86-144)||(8102908-8102968)
chr6 (81-147)||(30608360-30608428)
chr6 (73-112)||(30879600-30879639)
chr6 (63-147)||(17237111-17237197)
chr6 (63-147)||(25064402-25064488)
chr6 (299-400)||(8113383-8113484)
chr6 (72-147)||(20226019-20226096)
chr6 (72-147)||(22120003-22120080)
chr6 (72-147)||(31296988-31297065)
chr6 (72-147)||(33053013-33053090)
chr6 (85-147)||(8497156-8497220)
chr6 (85-147)||(12059598-12059662)
chr6 (73-143)||(12654035-12654107)
chr6 (73-147)||(28981346-28981422)
chr6 (81-147)||(29319722-29319790)
chr6 (63-141)||(33740409-33740489)
chr6 (85-147)||(35001778-35001842)
[»] chr2 (33 HSPs)
chr2 (64-144)||(10929834-10929916)
chr2 (72-147)||(1421853-1421929)
chr2 (72-147)||(29173563-29173640)
chr2 (64-112)||(10548356-10548404)
chr2 (85-147)||(2808298-2808361)
chr2 (68-196)||(8809452-8809576)
chr2 (72-147)||(25508914-25508991)
chr2 (72-147)||(31788633-31788710)
chr2 (68-141)||(4903997-4904072)
chr2 (68-196)||(14955702-14955835)
chr2 (63-147)||(8806036-8806122)
chr2 (72-195)||(10237011-10237139)
chr2 (72-147)||(4778930-4779007)
chr2 (84-147)||(37876452-37876517)
chr2 (72-127)||(16376116-16376172)
chr2 (64-127)||(34128551-34128615)
chr2 (299-382)||(7754022-7754105)
chr2 (72-144)||(7646655-7646729)
chr2 (63-147)||(9986167-9986253)
chr2 (68-144)||(17248996-17249074)
chr2 (63-147)||(27949596-27949682)
chr2 (72-144)||(35220505-35220579)
chr2 (72-147)||(4100513-4100589)
chr2 (72-147)||(5427715-5427792)
chr2 (72-147)||(7677719-7677796)
chr2 (85-147)||(84006-84070)
chr2 (72-127)||(12554048-12554104)
chr2 (164-196)||(14416429-14416461)
chr2 (81-147)||(21570233-21570301)
chr2 (85-147)||(27248976-27249040)
chr2 (60-142)||(31580485-31580569)
chr2 (85-147)||(40659757-40659821)
chr2 (164-196)||(44441784-44441816)
[»] chr5 (24 HSPs)
chr5 (72-147)||(14082241-14082318)
chr5 (64-147)||(34945551-34945636)
chr5 (68-130)||(37985976-37986039)
chr5 (72-147)||(13007395-13007472)
chr5 (72-147)||(25980323-25980400)
chr5 (85-147)||(34881907-34881971)
chr5 (63-147)||(20257521-20257607)
chr5 (72-147)||(24229629-24229706)
chr5 (85-147)||(11976780-11976844)
chr5 (63-147)||(10332392-10332478)
chr5 (80-195)||(14211401-14211521)
chr5 (63-147)||(27266684-27266770)
chr5 (68-147)||(19121074-19121155)
chr5 (72-147)||(38597963-38598040)
chr5 (85-147)||(6011983-6012047)
chr5 (73-143)||(6281376-6281448)
chr5 (85-147)||(7241974-7242038)
chr5 (85-147)||(7247149-7247213)
chr5 (81-147)||(9113570-9113638)
chr5 (85-147)||(11768189-11768253)
chr5 (85-147)||(13422112-13422176)
chr5 (64-100)||(38961585-38961621)
chr5 (68-112)||(39567432-39567476)
chr5 (85-147)||(41184265-41184329)
[»] scaffold0884 (1 HSPs)
scaffold0884 (72-147)||(1818-1895)
[»] scaffold0445 (1 HSPs)
scaffold0445 (72-147)||(1511-1588)
[»] scaffold0347 (1 HSPs)
scaffold0347 (68-150)||(6193-6277)
[»] scaffold0127 (1 HSPs)
scaffold0127 (72-147)||(15659-15736)
[»] scaffold0049 (1 HSPs)
scaffold0049 (72-147)||(71145-71222)
[»] scaffold0009 (1 HSPs)
scaffold0009 (63-147)||(57933-58019)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 51 - 439
Target Start/End: Original strand, 10331227 - 10331616
Alignment:
Q  51 tagtgatttagattttatagacattttgttgttgtatgttattaacttggatgatgtgagttgtttgcagattcacctttatgtttttagcgatgttcat 150  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||||||    
T  10331227 tagtgatttagattttataaacattttgttgttgtatgttattaactttgatgatgtgagttgtttgcagattcacctttatatttttaactatgttcat 10331326  T
Q  151 gctattatattatatgtattctatcaatttgaataaataaatatcaatttannnnnnnna-aaataaacatttcggctattgacaaggaaatgaaaaaca 249  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||           |||||||||||||||||| |||||| |||||||||||||    
T  10331327 gctattatattttatgtattctatcaatttgaataaataaatatcaatttgttttttttttaaataaacatttcggctaatgacaaagaaatgaaaaaca 10331426  T
Q  250 caaaaatagatagagaaacaaaatgaagagtgaaagtagggtagattacagggtgagagtccaattagatctctcatcggtggaccacgagaaaaatact 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||    
T  10331427 caaaaatagatagagaaacaaaatgaagagtgaaagtagggtagattatagggtgagggtccaattaggtctctcatcggtggaccacgagaaaaaaact 10331526  T
Q  350 gttagatgaaatagatggttcagatttattcaattaaaaataagaacatgtacaattactcacattcaattttcttaatttccacctatg 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||    
T  10331527 gttagatgaaatagatggttcagatttattcaattaaaaataagaacatgtacaattactgacattcaattttcttgattttcacctatg 10331616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 419
Target Start/End: Complemental strand, 36403060 - 36402942
Alignment:
Q  302 gtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgt 400  Q
    ||||| |||||||||| || |||| ||||||||||||||||||| || ||||||| |||||||||||| |||||||||| |||||||| | ||||||| |    
T  36403060 gtgagggtccaattaggtccctcaccggtggaccacgagaaaaacacagttagataaaatagatggttaagatttattcaaattaaaagtgagaacatat 36402961  T
Q  401 acaattactcacattcaat 419  Q
    ||||||||||| |||||||    
T  36402960 acaattactcatattcaat 36402942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 407
Target Start/End: Complemental strand, 26132169 - 26132062
Alignment:
Q  301 ggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttatt-caattaaaaataagaacatg 399  Q
    |||||| |||||||||| || ||||  |||||||||||||||||| || ||||||| |||||||||||| |||||||||  |||||||| | |||||||     
T  26132169 ggtgagggtccaattaggtccctcactggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattgaaattaaaagtgagaacata 26132070  T
Q  400 tacaatta 407  Q
    ||||||||    
T  26132069 tacaatta 26132062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 44376653 - 44376754
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaattaaaaataagaacat 398  Q
    |||| ||| |||||||||  || |||||||||||||||||| ||||||||   || || ||||||||||||||||||||||||| | ||||  |||||||    
T  44376653 agggcgagggtccaattacgtccctcatcggtggaccacgaaaaaaataccaataaattaaatagatggttcagatttattcaaattaaaaggagaacat 44376752  T
Q  399 gt 400  Q
    ||    
T  44376753 gt 44376754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 8412438 - 8412365
Alignment:
Q  76 ttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||    
T  8412438 ttgtcgttttatgctattaacttgggtgttgtgagtttgtttgcagattcaccctttatgtttttagcgatgtt 8412365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 17693531 - 17693456
Alignment:
Q  74 ttttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||||||||||||||||||||||||||| |||||| ||| | | |||||||| |||||  ||||||||||||||    
T  17693531 ttttgttgttgtatgttattaacttggatgttgtgagtttggtcgtagattcactctttacatttttagcgatgtt 17693456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 15344477 - 15344551
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||||||    
T  15344477 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcatcctttacgtttttagcgat 15344551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 15433542 - 15433616
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||||||    
T  15433542 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcatcctttacgtttttagcgat 15433616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 15524846 - 15524920
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||||||    
T  15524846 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcatcctttacgtttttagcgat 15524920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 14544815 - 14544738
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  ||||| || |||||||||||||| |||||| ||||||||||||||| || ||| |||||||||||||||    
T  14544815 cattttgccgttgtttgctattaacttggatggtgtgagtttgtttgcagattcatccattacgtttttagcgatgtt 14544738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 14585855 - 14585974
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacctt-tatgtttttagcgatgtt---catgctattatattatatgtattctatc 175  Q
    |||||||| ||||||||||| || |||||||| ||| ||||||||||| | || |||||||||||| ||   |||| |||||| |   ||||||||||||    
T  14585855 gttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctatacgtttttagcgatattgatcatgttattatctctgatgtattctatc 14585954  T
Q  176 aatttgaataaataaatatc 195  Q
    ||||||||| ||| ||||||    
T  14585955 aatttgaatgaatgaatatc 14585974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 41060183 - 41060106
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||| ||| || |||| ||||||||| ||||| ||||||||| |||||| |||||||| ||||||    
T  41060183 cattttgttgttgtatgctatcaatttgggtgatgtgagtttgttcgcagattcatcctttacgtttttagtgatgtt 41060106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 43833916 - 43833801
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt---catgctattatattatatg 166  Q
    |||||||  |||||||| ||||||||||| || |||||||| ||||||||||||||| ||||  ||||||||||| ||   |||| |||| | ||  |||    
T  43833916 cattttgccgttgtatgctattaacttgggtgctgtgagtttgtttgcagattcaccatttacttttttagcgatattgatcatgttattgtctttgatg 43833817  T
Q  167 tattctatcaatttga 182  Q
    ||||||||||||||||    
T  43833816 tattctatcaatttga 43833801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 45445731 - 45445654
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||||||| |||| |||||||||||||| |||||| ||||| ||| ||||||| |||| ||||||| |||||||    
T  45445731 cattttgttgttttatgctattaacttggatgttgtgagtttgttcgcatattcaccttttacgtttttaacgatgtt 45445654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 24099163 - 24099099
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  24099163 tatgctattaacttggatgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 24099099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 471082 - 471007
Alignment:
Q  74 ttttgttgttgtatgttattaacttggatgatgtga-gttgtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||| | |||||||||||||||||| ||||||||  ||||| | ||||||||  ||||||||||||||||||||    
T  471082 ttttgtcgatgtatgttattaacttgggtgatgtgattttgttcgtagattcacattttatgtttttagcgatgtt 471007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 9501913 - 9501972
Alignment:
Q  85 tatgttattaacttggatgatgtgagtt-gtttgcagattcacctttatgtttttagcga 143  Q
    |||||||||||| |||||| |||||||| |||| |||||||| |||| ||||||||||||    
T  9501913 tatgttattaacatggatgttgtgagtttgtttacagattcagctttttgtttttagcga 9501972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 16928667 - 16928600
Alignment:
Q  82 ttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  16928667 ttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 16928600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 14906834 - 14906748
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||||||| |||| |||||||||||||  |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  14906834 ttttgtaggcattatgttgttatatgctattaacttggatcctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 14906748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 18890619 - 18890491
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgt---tcatgctattatattatatg 166  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| ||| |  |||||||||||| |   ||||| |||| | |   |||    
T  18890619 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctatccgtttttagcgatattaatcatgttattgtctctgatg 18890520  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  18890519 tattctatcaatttgaatgaatgaatatc 18890491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 3673610 - 3673687
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||  |||||||||||||| |||||| |||||||||| |||| |||||| |||||||||| ||||    
T  3673610 cattttgccgttgtatcctattaacttggatgctgtgagtttgtttgcagtttcaccctttacgtttttagcgttgtt 3673687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 7677203 - 7677126
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtga-gttgtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||||||||||||||| || |||||  |||||  ||||||||| ||||| |||||||||||||||    
T  7677203 cattttgccgttgtatgttattaacttgggtgctgtgactttgttcacagattcactctttacgtttttagcgatgtt 7677126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 7883161 - 7883084
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||  ||||||||||| || |||||||| ||| ||||||||||| |||| |||||||||||||||    
T  7883161 cattttgccgttgtatcctattaacttgggtgctgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 7883084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 15344564 - 15344601
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatcaattta 201  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15344564 atgtattctatcaatttgaatgaataaatatcatttta 15344601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 15433629 - 15433666
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatcaattta 201  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15433629 atgtattctatcaatttgaatgaataaatatcatttta 15433666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 15524933 - 15524970
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatcaattta 201  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  15524933 atgtattctatcaatttgaatgaataaatatcatttta 15524970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 23230812 - 23230889
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||||| ||||   |||||||||||||    
T  23230812 cattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccatttacacttttagcgatgtt 23230889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 29617194 - 29617125
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattc-acctttatgttttta 139  Q
    ||||||||||||||||| |||||||||  ||| |||||| ||||| ||||||||  ||||||||||||||    
T  29617194 cattttgttgttgtatgctattaacttaaatgttgtgagtttgttcgcagattcgccctttatgttttta 29617125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 29777401 - 29777478
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  29777401 cattatgtcgttatatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 29777478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 30568241 - 30568164
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  ||| |||| ||||||||||| || |||||||| ||| ||||||||||| |||| |||||||||||||||    
T  30568241 cattttgccgttttatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 30568164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 31013528 - 31013451
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||| |||||    
T  31013528 cattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcaatgtt 31013451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 44099838 - 44099761
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  44099838 cattatgtcgttatatgctattaacttggatgttgtgagtttgttagcagattcatcctttacgtttttagcggtgtt 44099761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 5046922 - 5046962
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  5046922 cattttatcgttgtatgttattaacttgggtgatgtgagtt 5046962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 8867974 - 8868094
Alignment:
Q  72 cattttgttgttgtatgttatt---aacttggatgatgtgagtt-gtttgcagattcaccttt-atgtttttagcgatgtt---catgctattatattat 163  Q
    |||||||| |||||||||||||   ||||||| || |||||||| ||| ||| |||||||||| | ||||||||| |||||   |||| |||| |||       
T  8867974 cattttgtcgttgtatgttatttataacttgggtggtgtgagtttgttcgcaaattcaccttttacgtttttagcaatgttgatcatgttattgtatctg 8868073  T
Q  164 atgtattctatcaatttgaat 184  Q
    |||||||||||||||||||||    
T  8868074 atgtattctatcaatttgaat 8868094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 9619246 - 9619182
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  9619246 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 9619182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 11464366 - 11464430
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||| ||||| | ||||||| |||||| |||||||||| ||||    
T  11464366 tatgctattaacttggatgatgtgagtttgttcgtagattcatcctttacgtttttagcggtgtt 11464430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 11725875 - 11725939
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||| |||||  |||||||| |||||| |||||||||| ||||    
T  11725875 tatgctattaacttggatgatgtgagtttgttcacagattcatcctttacgtttttagcggtgtt 11725939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 27498294 - 27498230
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    ||||||||||||||||  || |||||||| ||||||| || | |||| |||||||||||||||||    
T  27498294 tttatagacattttgtctttatatgttatgaacttgggtgttatgagcttgtttgcagattcacc 27498230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 34611993 - 34612065
Alignment:
Q  79 ttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttca 149  Q
    ||||| |||| |||||||||||||| |||||| ||||| |||||||||  ||||| |||||||| ||||||||    
T  34611993 ttgttatatgctattaacttggatgttgtgagtttgttcgcagattcattctttacgtttttagtgatgttca 34612065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 41896686 - 41896742
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| |||||||||||    
T  41896686 cattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcacc 41896742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 43192236 - 43192172
Alignment:
Q  85 tatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| | |||||| ||| ||||||||| ||||||||||||||||| ||||    
T  43192236 tatgctattaacttggatgttctgagtttgttcgcagattcatcctttatgtttttagcggtgtt 43192172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 301 - 419
Target Start/End: Original strand, 5490522 - 5490641
Alignment:
Q  301 ggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatg 399  Q
    |||||| || ||||||| ||||||||||||||||||||||||||| || |||| || |||||||||||| |||||||||| |||||||| |||||||||     
T  5490522 ggtgagggttcaattaggtctctcatcggtggaccacgagaaaaacaccgttaaataaaatagatggttaagatttattcaaattaaaagtaagaacata 5490621  T
Q  400 tacaattactcacattcaat 419  Q
    ||||||||||||||||||||    
T  5490622 tacaattactcacattcaat 5490641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 419
Target Start/End: Complemental strand, 13416369 - 13416252
Alignment:
Q  303 tgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgta 401  Q
    |||| |||||||||| || |||  ||||||||||||||||||| || ||||||| |||||||||||| |||| ||||| |||||||| | ||||||| ||    
T  13416369 tgagggtccaattaggtccctcgccggtggaccacgagaaaaacaccgttagataaaatagatggttaagatatattcaaattaaaagtgagaacatata 13416270  T
Q  402 caattactcacattcaat 419  Q
    ||||||||||||||||||    
T  13416269 caattactcacattcaat 13416252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 46399132 - 46399180
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46399132 tttataaacattttgttgttgtatgttattaacttggatgatgtgagtt 46399180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7997981 - 7998045
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||| ||||    
T  7997981 tatgttattaacttggatgatgtgagtttgtttgcagattcatcctttacgtttttagcggtgtt 7998045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 5324469 - 5324384
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgagttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| ||||||||||| |||||||||  ||||| |||||||||||||||    
T  5324469 ttttgtaggcattatgtcgttatatgctattaacttggatgttgtgagttgttcgcagattcatgctttacgtttttagcgatgtt 5324384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 12635340 - 12635417
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| |||||||||||||| ||| || ||||| | ||||||||| ||||||||||||||||||||    
T  12635340 cattttgtcgttgtatgctattaacttggatgttgttagtttgttcggagattcaccttttatgtttttagcgatgtt 12635417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 31919155 - 31919232
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga 143  Q
    |||||||||||| |||||||| |||||||||||||| || ||| ||||| ||||||||| |||||| |||||||||||    
T  31919155 tagacattttgtcgttgtatgctattaacttggatgttgcgagtttgttcgcagattcatcctttacgtttttagcga 31919232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 7342892 - 7342978
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||| || |||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  7342892 ttttataggcattatgatgttatatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 7342978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 9687116 - 9687030
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| ||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  9687116 ttttgtaggcattatgtcgttatatgctattaacttggatgatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 9687030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 33817057 - 33816999
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagc 141  Q
    |||||||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  33817057 tatgttattaacttggatgatgtgagtttgttcgcggattcatcctttatgtttttagc 33816999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 33876527 - 33876469
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagc 141  Q
    |||||||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  33876527 tatgttattaacttggatgatgtgagtttgttcgcggattcatcctttatgtttttagc 33876469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 50148540 - 50148626
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgagttgttt-gcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| |||||||||||| ||||||||| ||||||  ||||||||||||||    
T  50148540 ttttgtaggcattatgtcgttatatgctattaacttggatgttgtgagttgtttcgcagattcatcctttacatttttagcgatgtt 50148626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 7337585 - 7337508
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| ||||| ||| ||||||||||| || |||||| ||||| ||||||||| ||||||| ||||||||||||||    
T  7337585 cattttgctgttgcatgctattaacttggctgttgtgagtttgttcgcagattcaccctttatatttttagcgatgtt 7337508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 31109249 - 31109370
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagattta-ttcaattaaaaataagaaca 397  Q
    |||||||| |||||||||| || |||| |||||||| |||||||||||||   ||||| ||| |  ||||||||||||| || |||||||| |  |||||    
T  31109249 agggtgagggtccaattaggtccctcaccggtggactacgagaaaaataccaatagattaaacaagtggttcagatttatttaaattaaaagtgggaaca 31109348  T
Q  398 tgtacaattactcacattcaat 419  Q
    |||| |  | ||||||||||||    
T  31109349 tgtagagctgctcacattcaat 31109370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 11462403 - 11462327
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    ||||||| |||||||| ||||||||||| || |||||| ||||| | ||||||||| |||| |||||||||||||||    
T  11462403 attttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgtagattcaccatttacgtttttagcgatgtt 11462327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 9172687 - 9172746
Alignment:
Q  90 tattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  9172687 tattaacttggatgatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 9172746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 9180669 - 9180728
Alignment:
Q  90 tattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  9180669 tattaacttggatgatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 9180728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 13415522 - 13415601
Alignment:
Q  303 tgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaa 382  Q
    |||| ||||||||||||| ||||||| |||||||||| ||||| ||   ||||| ||||| |||||| ||||| ||||||    
T  13415522 tgagggtccaattagatccctcatcgatggaccacgaaaaaaacaccaatagattaaataaatggtttagattcattcaa 13415601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 41994609 - 41994652
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagttgtt 115  Q
    ||||||||||||||||| |||||||||| ||| |||||||||||    
T  41994609 cattttgttgttgtatgctattaacttgcatgttgtgagttgtt 41994652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 19061079 - 19061153
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||| ||||| | |||||||||||||||||    
T  19061079 cattttgccgttgtatgctattaacttggatgttgtgagtttgttcgcacattcatcttttatgtttttagcgat 19061153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 24583120 - 24583194
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||| ||||||||||| ||||||||| |||||  |||||||| |||||| ||||||||||||    
T  24583120 cattttgccgttgtatgatattaacttgggtgatgtgagtttgttcacagattcatcctttacgtttttagcgat 24583194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 24583316 - 24583390
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||| ||||||||||| ||||||||| ||||| ||||||||| ||||||  |||||||||||    
T  24583316 cattttgccgttgtatgctattaacttgggtgatgtgagtttgttcgcagattcatcctttacatttttagcgat 24583390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 34413014 - 34412940
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||||||||||||||| || |||||| ||||| ||||||||| ||| || ||||||||||||    
T  34413014 cattttgcggttgtatgttattaacttgggtgttgtgagtttgttcgcagattcaccctatacgtttttagcgat 34412940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 36775632 - 36775558
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||||||||| ||| || ||||||||||||    
T  36775632 cattttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattcaccctatacgtttttagcgat 36775558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 47133064 - 47133150
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||||||  ||| |||| |||||||||||||| |||||| ||||| ||||||| | |||||| |||||||||||||||    
T  47133064 ttttgtaggcattttgccgttatatgctattaacttggatgttgtgagtttgttcgcagatttatcctttacgtttttagcgatgtt 47133150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 49627079 - 49627157
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||||||  |||||||| |||||| |||| || |||||| ||||| ||||||||| |||||| ||||||||||||    
T  49627079 tagacattttgccgttgtatgctattaatttgggtgttgtgagtttgttcgcagattcatcctttacgtttttagcgat 49627157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 51872033 - 51872119
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  51872033 ttttgtaggcattatgtcgttatatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 51872119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 27456650 - 27456731
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||| |||||||| ||||||||||| || |||||| ||||| ||| ||||| | |||| ||||||| |||||||    
T  27456650 tagacattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcaaattcatcttttacgtttttaacgatgtt 27456731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Complemental strand, 31116722 - 31116673
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatac 348  Q
    |||||||| |||||||||| || |||| |||||||| |||||||||||||    
T  31116722 agggtgagggtccaattaggtccctcaccggtggactacgagaaaaatac 31116673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 31692292 - 31692255
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatcaattta 201  Q
    ||||||||||||||||||||||||| ||||||| ||||    
T  31692292 atgtattctatcaatttgaataaatgaatatcatttta 31692255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 49648798 - 49648757
Alignment:
Q  71 acattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||||| |||||||||||||| |||| |||||||||||    
T  49648798 acattttgttattgtatgttattaatttgggtgatgtgagtt 49648757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 51373780 - 51373703
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| || ||||| ||||||||||| || |||||| ||||||| ||||||| |||||| ||||||| |||||||    
T  51373780 cattttgtcgtcgtatgctattaacttgggtgttgtgagtttgtttggagattcaccctttacgtttttatcgatgtt 51373703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 5701451 - 5701515
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  5701451 tatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 5701515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 5984006 - 5984046
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||| |||||||| ||||||||||| |||||||||||    
T  5984006 cattttgtcgttgtatgctattaacttgggtgatgtgagtt 5984046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 11454129 - 11454193
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  11454129 tatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 11454193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 14489443 - 14489519
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||||||||||||||||||| |  || ||| || || ||| ||||| |||||| |||||||||||||||    
T  14489443 attttgttgttgtatgttattaacttgggtattgagagtttattagcatattcaccctttacgtttttagcgatgtt 14489519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 25564164 - 25564196
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttgg 100  Q
    |||| ||||||||||||||||||||||||||||    
T  25564164 tagatattttgttgttgtatgttattaacttgg 25564196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 29738577 - 29738509
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| ||||||||||| || |||||||| ||| ||||||||| |||||| |||||||| ||||||    
T  29738577 gttgtatgctattaacttgggtgctgtgagttcgttcgcagattcaccctttacgtttttagtgatgtt 29738509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 39927440 - 39927380
Alignment:
Q  89 ttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| ||||||| |||||||| ||| ||| ||||| ||||||||||||||||||||||    
T  39927440 ttattaatttggatgttgtgagtttgttcgcatattcatcctttatgtttttagcgatgtt 39927380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 49504508 - 49504440
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||| |||||||    
T  49504508 gttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctttacgtttttaacgatgtt 49504440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 51868534 - 51868470
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||| |||||| ||||| ||| ||||| |||||| |||||||||| ||||    
T  51868534 tatgttattaacttggatgctgtgagtttgttcgcaaattcatcctttacgtttttagcggtgtt 51868470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 419
Target Start/End: Complemental strand, 21281199 - 21281078
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaaca 397  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||| |||||||||||| | |||||||| |||||||| | ||||||    
T  21281199 agggtgagggtccaattagatccctcatcggtggaccacgagaaaaacaccgttagataaaatagatggttaaaatttattcaaattaaaagtgagaaca 21281100  T
Q  398 tgtacaattactcacattcaat 419  Q
    | ||||||||| ||||||||||    
T  21281099 tatacaattacacacattcaat 21281078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 299 - 381
Target Start/End: Complemental strand, 45141181 - 45141099
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattca 381  Q
    |||||||| ||||||||||||| ||||||| ||||||| |||||||| |  | ||||||||||||||||||||||||||||||    
T  45141181 agggtgagggtccaattagatccctcatcgatggaccatgagaaaaacaacgatagatgaaatagatggttcagatttattca 45141099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 43853630 - 43853758
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt---catgctattatattatatg 166  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||| ||||  ||||||||||||||    ||| |||| |||   |||    
T  43853630 cattttgttgttgtatgttattaacttggatgttgtgagtttgttcgcagattaaccatttacatttttagcgatgttgagtatgttattgtatctgatg 43853729  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  43853730 tattctatcaatttgaatgaatgaatatc 43853758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 45140488 - 45140581
Alignment:
Q  323 tcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgtacaattactcacatt 415  Q
    ||||||| |||| |||||||||| |||  || |||||||||||||||||||||||||| |||||||| |  |||||||||||| ||||||||||    
T  45140488 tcatcggcggacaacgagaaaaacacttatatatgaaatagatggttcagatttattcaaattaaaagtgggaacatgtacaactactcacatt 45140581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 18935969 - 18936097
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacctt-tatgtttttagcgatgtt---catgctattatattatatg 166  Q
    ||||||| | ||||| ||||||||||||| || |||||||| ||||||||||||||| | ||||||||||||||| ||   ||||||||| | |   |||    
T  18935969 cattttgctattgtacgttattaacttgggtgttgtgagtttgtttgcagattcaccctatatgtttttagcgatattgatcatgctattgtctctgatg 18936068  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  18936069 tattctatcaatttgaatgaatgaatatc 18936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 201
Target Start/End: Original strand, 36161898 - 36162032
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcac-ctttatgtttttagcgatgtt---catgctattatattatatg 166  Q
    ||||| || ||| |||||||||||||||| || |||||||| |||  ||||||||| ||||| ||||||| |||||||   |||| |||| ||||  |||    
T  36161898 catttggtcgttatatgttattaacttgggtgttgtgagtttgttcacagattcactctttacgtttttaacgatgttgatcatgttattgtatttgatg 36161997  T
Q  167 tattctatcaatttgaataaataaatatcaattta 201  Q
    |||||||||||||||||| ||| ||||||| ||||    
T  36161998 tattctatcaatttgaatgaatgaatatcatttta 36162032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 53811215 - 53811290
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagttgtttgcagattca-cctttatgtttttagcgatgt 146  Q
    |||||||  |||||||| ||||||||||| || ||||||||||| ||||||||| |||||| ||||||||||||||    
T  53811215 cattttggcgttgtatgctattaacttgggtgttgtgagttgttcgcagattcaccctttacgtttttagcgatgt 53811290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 36194895 - 36195023
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctt-tatgtttttagcga---tgttcatgctattatattatatg 166  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||||||| ||   || || || |||||| |   |||    
T  36194895 cattttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattcaccttatatgtttttagtgatattgatcgtgttattatgtctgatg 36194994  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  36194995 tattctatcaatttgaatgaatgaatatc 36195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 42032451 - 42032323
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagatt-cacctttatgtttttagcgatgt---tcatgctattatattatatg 166  Q
    |||||||  |||||||| |||||||||| ||| |||||||| ||||||| ||| |||||||||||||||| ||||||   | ||| ||||| ||   |||    
T  42032451 cattttgccgttgtatgctattaacttgaatgttgtgagtttgtttgcaaatttcacctttatgtttttaacgatgttgattatgttattacatatgatg 42032352  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  42032351 tattctatcaatttgaatgaatgaatatc 42032323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 56040568 - 56040491
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| |||||||||||||| |||||| ||| | ||||||||| |||||| |||||||||||||||    
T  56040568 cattttgtcgttgtatgctattaacttggatgctgtgagtttgctcgcagattcaccctttacgtttttagcgatgtt 56040491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 196
Target Start/End: Complemental strand, 6155145 - 6155013
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatg---atgtgag-ttgtttgcagattca-cctttatgtttttagcgatgt---tcatgctattatattat 163  Q
    |||||||| |||||||| ||||||||||| ||    |||||| ||||| ||||||||| |||||||||||||||||||||   ||||  |||| |||       
T  6155145 cattttgtcgttgtatgctattaacttgggtgctactgtgagtttgttcgcagattcaccctttatgtttttagcgatgttgatcattttattgtatcta 6155046  T
Q  164 atgtattctatcaatttgaataaataaatatca 196  Q
    ||||||||||||||||||||| ||| |||||||    
T  6155045 atgtattctatcaatttgaatgaatgaatatca 6155013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 1532086 - 1532172
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||| ||  ||| |||| |||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||| ||||    
T  1532086 ttttgtagacattatgccgttatatgctattaacttggatgttgtgagcttgttcgcagattcatcctttatgtttttagcggtgtt 1532172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 20569435 - 20569521
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||||||| |||| ||||||||||||| ||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  20569435 ttttgtaggcattatgttgttatatgctattaacttggataatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 20569521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 21090320 - 21090406
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| ||||||||||||||||||  |||||| ||||||||||||||| |||||| |||||||||| ||||    
T  21090320 ttttgtaggcattatgtcgttatatgttattaacttggatagtgtgagtttgtttgcagattcatcctttacgtttttagcggtgtt 21090406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 38706621 - 38706535
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||| ||| ||| |||| ||||||||||||||||||||| ||||| ||||||||| | |||| |||||||||| ||||    
T  38706621 ttttgtagacattatgtcgttatatgctattaacttggatgatgtgagtttgttcgcagattcatcttttacgtttttagcggtgtt 38706535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 2520966 - 2521043
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  2520966 cattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 2521043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 21662620 - 21662701
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||| |||| ||||||||| ||||||||||  || |||||| ||||| |||| |||||| ||||||||||||||||||||    
T  21662620 tagacactttggtgttgtatgctattaacttgagtgttgtgaggttgttcgcagtttcaccatttatgtttttagcgatgtt 21662701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 21671384 - 21671465
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||| |||| ||||||||| ||||||||||  || |||||| ||||| |||| |||||| ||||||||||||||||||||    
T  21671384 tagacactttggtgttgtatgctattaacttgagtgttgtgaggttgttcgcagtttcaccatttatgtttttagcgatgtt 21671465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 34024340 - 34024263
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  34024340 cattatgttgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 34024263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 195
Target Start/End: Complemental strand, 52933870 - 52933743
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcac-ctttatgtttttagcgatgtt---catgctattatattatatgt 167  Q
    |||||| | ||||||||||||||||||  ||||||||||| ||  ||||||| || |||||  ||||||||||||||   |||| |||| |||   ||||    
T  52933870 attttgcttttgtatgttattaacttgagtgatgtgagtttgtgcgcagatttacgctttacatttttagcgatgttggtcatgttattgtatctaatgt 52933771  T
Q  168 attctatcaatttgaataaataaatatc 195  Q
    ||| ||||||||||||||||| ||||||    
T  52933770 attttatcaatttgaataaatgaatatc 52933743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 4644058 - 4644122
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  4644058 tatgctattaacttggatgttgtgagcttgttcgcagattcatcctttacgtttttagcgatgtt 4644122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 17949246 - 17949190
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    ||||||||| ||||||||||||||||||| || |||||| ||||| |||||||||||    
T  17949246 cattttgttcttgtatgttattaacttgggtgttgtgagtttgttcgcagattcacc 17949190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 17953098 - 17953042
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    ||||||||| ||||||||||||||||||| || |||||| ||||| |||||||||||    
T  17953098 cattttgttcttgtatgttattaacttgggtgttgtgagtttgttcgcagattcacc 17953042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 19896536 - 19896468
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||||||||| |||| ||||| ||||||||||| |||| ||||||| |||||||    
T  19896536 gttgtatgctattaacttggatgatatgagtttgttcgcagattcaccatttacgtttttaacgatgtt 19896468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 22806723 - 22806791
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtg-agttgtttgcagattcac-ctttatgttttt 138  Q
    |||||||||||||||||||||||||||||||| | || | ||||| | |||||||| ||||||||||||    
T  22806723 cattttgttgttgtatgttattaacttggatgctatgaatttgttcgtagattcactctttatgttttt 22806791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 29966522 - 29966590
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||||||| |||||| ||||| ||||||||| |||||| ||||||| |||||||    
T  29966522 gttgtatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttaacgatgtt 29966590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 35348507 - 35348571
Alignment:
Q  85 tatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||| ||||||||||| || |||||||| ||||||||||||||| |||| |||||||||||||||    
T  35348507 tatgctattaacttgggtgttgtgagtttgtttgcagattcaccctttacgtttttagcgatgtt 35348571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 36204288 - 36204224
Alignment:
Q  85 tatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    ||||||||||| ||||||| |||||||| |||  |||||||||| ||||||||||||||||||||    
T  36204288 tatgttattaatttggatgttgtgagtttgttcacagattcaccctttatgtttttagcgatgtt 36204224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 43095816 - 43095892
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| |||||||| |||||| |||||||||||||| ||||| ||||||||| | |||| |||||||| ||||||    
T  43095816 attttgtagttgtatgctattaatttggatgatgtgagtttgttcgcagattcatcatttacgtttttagggatgtt 43095892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 44947612 - 44947676
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  44947612 tatgttattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 44947676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 49410423 - 49410487
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||||||||||||||||| ||||| || |||||| |||||| |||||||||| ||||    
T  49410423 tatgttattaacttggatgatgtgagtttgttcgctgattcatcctttacgtttttagcggtgtt 49410487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 53616539 - 53616475
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  53616539 tatgctattaacttggatgatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 53616475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 10359437 - 10359374
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattcacctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||| ||||| ||| ||||| ||||| |||||||||| ||||    
T  10359437 tatgctattaacttggatgatgtgagtttgttcgcaaattcatctttacgtttttagcggtgtt 10359374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 2115499 - 2115413
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||  |||||||| ||| ||||||||| ||||||||||||||||| ||||    
T  2115499 ttttgtaggcattatgtcgttatatgctattaacttggatactgtgagtttgttcgcagattcatcctttatgtttttagcggtgtt 2115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 29960871 - 29960797
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcaccttt-atgtttttagcgat 144  Q
    |||||||  |||||||| | ||||||||| || |||||||| ||| |||||||||||||| ||||||||||||||    
T  29960871 cattttgccgttgtatgcttttaacttgggtgctgtgagtttgttcgcagattcaccttttatgtttttagcgat 29960797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 9178540 - 9178617
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||  ||| ||||||| ||| |||| |||||| |||||||||||| |||||||    
T  9178540 cattttgtcgttgtatgctattaacttgtgtgacgtgagtttgttcgcagtttcaccctttatgtttttaacgatgtt 9178617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 19853434 - 19853357
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||| |||||||    
T  19853434 cattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttaacgatgtt 19853357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 35261392 - 35261449
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttag 140  Q
    |||| |||||||||||||| |||||| ||||||||||||||| |||||| ||||||||    
T  35261392 tatgctattaacttggatgttgtgagtttgtttgcagattcatcctttacgtttttag 35261449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 31891108 - 31891076
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatca 196  Q
    ||||||||||||||||||||| |||||||||||    
T  31891108 atgtattctatcaatttgaatgaataaatatca 31891076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 36184718 - 36184758
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  36184718 cattttgtcgttgtatgctattaacttggatgttgtgagtt 36184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 45227930 - 45227866
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||| |||||| ||||| | ||||||| |||||| |||||||||| ||||    
T  45227930 tatgttattaacttggatgttgtgagtttgttcgtagattcatcctttacgtttttagcggtgtt 45227866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 48257545 - 48257477
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||||||  |||||| ||||| ||||||||| |||||| ||||||| |||||||    
T  48257545 gttgtatgctattaacttggattttgtgagtttgttcgcagattcaccctttacgtttttaacgatgtt 48257477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 51318163 - 51318243
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagc 141  Q
    |||| ||| |||| ||| ||| |||| ||||||||||||||||||||| |||||  |||||||| |||||| |||||||||    
T  51318163 ttttgtaggcattatgtcgttatatgctattaacttggatgatgtgagtttgttcacagattcatcctttacgtttttagc 51318243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 419
Target Start/End: Complemental strand, 24874616 - 24874495
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaaca 397  Q
    |||||||| || ||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||| |||||||  | |||| |    
T  24874616 agggtgagggttcaattaggtccctcatcggtggaccacgagaaaaataccgttagataaaatagatggttaagatttattcaaattaaatgtgagaata 24874517  T
Q  398 tgtacaattactcacattcaat 419  Q
    | |||||||||||| |||||||    
T  24874516 tatacaattactcatattcaat 24874495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 767146 - 767267
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaaca 397  Q
    |||||||| |||||||||  || |||| ||||||| || || ||||| || ||||||| ||||| ||||||||||||||||| ||||||||||   ||||    
T  767146 agggtgagggtccaattaagtccctcaccggtggatcatgaaaaaaacaccgttagattaaatacatggttcagatttattcgaattaaaaatggaaaca 767245  T
Q  398 tgtacaattactcacattcaat 419  Q
    | ||||| ||||||||||||||    
T  767246 tatacaactactcacattcaat 767267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 28407844 - 28407763
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||  |||||||| |||||||||||||| |||||| ||||| ||||||| | ||||||||||||||||||||||    
T  28407844 tagacattttgccgttgtatgctattaacttggatgctgtgagtttgttcgcagatttaccctttatgtttttagcgatgtt 28407763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 40993326 - 40993403
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  40993326 cattttgtcgttgtatgttattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 40993403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 34899529 - 34899406
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttcatgctattatattatatgtat 169  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||||||||| |||||| ||||||||||||||        || ||||  |||||     
T  34899529 cattttgccgttgtatgctattaacttggatgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgt--------ttgtatttgatgtac 34899438  T
Q  170 tctatcaatttgaataaataaatatcaattta 201  Q
    ||||||||||||||| ||||||||||| ||||    
T  34899437 tctatcaatttgaatgaataaatatcatttta 34899406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 415
Target Start/End: Complemental strand, 768004 - 767887
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagattta-ttcaattaaaaataagaaca 397  Q
    |||||||| |||||||||  || |||| ||||||||||||| ||||||||   ||||| |||||||||| |||| |||| || |||||||||| | ||||    
T  768004 agggtgagggtccaattaagtccctcaccggtggaccacgaaaaaaatacaagtagataaaatagatggatcaggtttatttaaattaaaaatgaaaaca 767905  T
Q  398 tgtacaattactcacatt 415  Q
    | ||||| |||| |||||    
T  767904 tatacaactacttacatt 767887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 8001476 - 8001391
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  8001476 tttataggcattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 8001391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 48316734 - 48316657
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  48316734 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctttaggtttttagcgatgtt 48316657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 419
Target Start/End: Original strand, 27917736 - 27917826
Alignment:
Q  330 tggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaa-ttaaaaataagaacatgtacaattactcacattcaat 419  Q
    |||||||| | ||||| ||||||  || ||||| ||| ||||||||||||||| ||||||||| |||||| ||||| || |||||||||||    
T  27917736 tggaccacaaaaaaaacactgttgaattaaatacatgcttcagatttattcaaattaaaaataggaacatatacaactattcacattcaat 27917826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 9977136 - 9977055
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgagttgttt-gcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||| |||||||| |||||||||||||| ||||| || |||  |||||||| |||||| ||||||||| |||||    
T  9977136 tagacattttgtcgttgtatgctattaacttggatgttgtgaattttttcacagattcaccctttacgtttttagcaatgtt 9977055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 28044682 - 28044601
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||  |||||||| |||||||||||||| | |||| ||||| | ||||||| |||||| |||||||||||||||    
T  28044682 tagacattttgccgttgtatgctattaacttggatgttatgagtttgttcgtagattcaccctttacgtttttagcgatgtt 28044601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 29617625 - 29617545
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||||||||||||  || ||||||||||| || |||||| ||||||||||||||||| |||| |||||||||| ||||    
T  29617625 tagacattttgttgttgagtgctattaacttgg-tgttgtgagtttgtttgcagattcaccatttacgtttttagcgttgtt 29617545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 39171512 - 39171435
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || | |||||| ||||||||||||||| |||| |||||||||||||||    
T  39171512 cattttgccgttgtatgctattaacttgggtgctatgagtttgtttgcagattcaccctttacgtttttagcgatgtt 39171435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 42978779 - 42978856
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||||| ||| ||||||||| |||||| |||||||||||||||    
T  42978779 cattttgccgttgtatgctattaacttgggtgttgtgagttcgttcgcagattcaccctttacgtttttagcgatgtt 42978856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 433602 - 433516
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| || |||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  433602 ttttgtaggcattatgctgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 433516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 7640686 - 7640600
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| | |||| |||||||||| ||||    
T  7640686 ttttataggcattatgtcgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcatttacgtttttagcggtgtt 7640600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 35133116 - 35133244
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga---tgttcatgctattatattatatg 166  Q
    |||||||  |||||||| ||||||||||| ||||||||| ||||| ||||||||| ||| || ||||||| |||   || ||||| |||| | |   |||    
T  35133116 cattttgccgttgtatgctattaacttgggtgatgtgagtttgttcgcagattcaccctatacgtttttaacgatattgatcatgttattgtctctgatg 35133215  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  35133216 tattctatcaatttgaatgaatgaatatc 35133244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 41965832 - 41965738
Alignment:
Q  282 aaagtagggtagattacagggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagattt 376  Q
    ||||| |||| ||||  |||||||| |||||||||  || |||| |||||||||||||   |||||| ||||||||||||  ||||||| |||||    
T  41965832 aaagttgggtggattctagggtgagggtccaattaagtccctcaccggtggaccacgaaggaaataccgttagatgaaatgaatggttccgattt 41965738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 21975714 - 21975771
Alignment:
Q  312 aattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggtt 369  Q
    |||||| || |||| ||||||||||| ||||||| || ||||||| ||||||||||||    
T  21975714 aattaggtccctcaccggtggaccacaagaaaaacaccgttagataaaatagatggtt 21975771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 35261481 - 35261542
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttag 140  Q
    |||||||| |||||||||||||  |||||| ||||| ||||||||| |||||||||||||||    
T  35261481 gttgtatgctattaacttggatattgtgagtttgttcgcagattcatcctttatgtttttag 35261542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 46339229 - 46339298
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgttttta 139  Q
    |||| ||| ||| |||||||||||||||||||||||||| |||||  |||||||| |||||| |||||||    
T  46339229 cattatgtcgttatatgttattaacttggatgatgtgagtttgttcacagattcatcctttacgttttta 46339298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 46700196 - 46700277
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgagttgtttgcagattca-cctttatgtttttagcgat 144  Q
    ||||||| |||||||  ||| |||| |||||||| || || ||||||||  ||||||||||| |||||||||||||| ||||    
T  46700196 tttataggcattttgccgttatatgctattaactagggtgttgtgagtttgttgcagattcaccctttatgtttttaacgat 46700277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 3223034 - 3222986
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||||||||||  |||||||||||||||||||  || ||||||||    
T  3223034 tttatagacattttgccgttgtatgttattaacttgtgtgttgtgagtt 3222986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 13796851 - 13796811
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||| |||||||| |||||||||||||| ||||||||    
T  13796851 cattttgtcgttgtatgctattaacttggatgttgtgagtt 13796811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 19404661 - 19404601
Alignment:
Q  90 tattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttc 148  Q
    |||||||||||||| |||||| ||||| ||||||||| ||||||  |||||||||||||||    
T  19404661 tattaacttggatgctgtgagtttgttcgcagattcatcctttacatttttagcgatgttc 19404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 24351177 - 24351237
Alignment:
Q  89 ttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||| | |||||| ||| ||||||||| |||||| |||||||||||||||    
T  24351177 ttattaacttggatgctatgagtttgttcgcagattcatcctttacgtttttagcgatgtt 24351237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 33095886 - 33095850
Alignment:
Q  76 ttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||| |||||||||||| |||||||||||||||    
T  33095886 ttgttgttttatgttattaacatggatgatgtgagtt 33095850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 38798963 - 38799027
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattcacctt-tatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||||||| || ||||||| |||||||    
T  38798963 tatgctattaacttggatgttgtgagtttgttcgcagattcaccttgtacgtttttaacgatgtt 38799027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 327 - 419
Target Start/End: Complemental strand, 286020 - 285927
Alignment:
Q  327 cggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgtacaattactcacattcaat 419  Q
    ||||||||||||||||||| || ||||||| |||||||||||| |||||||||| |||||||| | ||||||| ||||||||||||||||||||    
T  286020 cggtggaccacgagaaaaacaccgttagataaaatagatggttaagatttattcaaattaaaagtgagaacatatacaattactcacattcaat 285927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 299 - 420
Target Start/End: Original strand, 43453449 - 43453571
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagattta-ttcaattaaaaataagaaca 397  Q
    |||||||| ||||||||| ||| |||| || |||||||||||||||||||   ||||| |||||||||||||| ||||| || |||||||| |  |||||    
T  43453449 agggtgagggtccaattaaatccctcaccgctggaccacgagaaaaataccaatagattaaatagatggttcaaatttatttaaattaaaattgggaaca 43453548  T
Q  398 tgtacaattactcacattcaatt 420  Q
    ||||||| |||||||||||||||    
T  43453549 tgtacaactactcacattcaatt 43453571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 419
Target Start/End: Complemental strand, 14746938 - 14746819
Alignment:
Q  301 ggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatg 399  Q
    |||||| |||||||||  || |||||||||||||||||| ||||| || ||||||| ||||| |||||||| |||||||| ||||||||||   |||||     
T  14746938 ggtgagggtccaattaagtccctcatcggtggaccacgaaaaaaacaccgttagattaaatacatggttcaaatttattcgaattaaaaatggaaacata 14746839  T
Q  400 tacaattactcacattcaat 419  Q
    ||||| ||||||||||||||    
T  14746838 tacaactactcacattcaat 14746819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 42020924 - 42020844
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttatt 379  Q
    |||||||| |||||||||| ||||||  ||||||| ||||| ||||||||   ||||| ||||||||||||||||||||||    
T  42020924 agggtgagggtccaattaggtctctcgccggtggatcacgaaaaaaataccaatagattaaatagatggttcagatttatt 42020844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 196
Target Start/End: Original strand, 16235592 - 16235721
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttcatgctattatattat---atg 166  Q
    |||||||| |||||||| |||||||||||||| |||||| ||||| ||||||| | ||| || |||||||||||| || ||  ||||||  | |   |||    
T  16235592 cattttgtcgttgtatgctattaacttggatggtgtgagtttgttcgcagatttaccctatacgtttttagcgatattgatcatattattgtctctgatg 16235691  T
Q  167 tattctatcaatttgaataaataaatatca 196  Q
    |||||||||||||||||| |||||||||||    
T  16235692 tattctatcaatttgaatgaataaatatca 16235721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 350 - 419
Target Start/End: Original strand, 35982556 - 35982626
Alignment:
Q  350 gttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgtacaattactcacattcaat 419  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||  ||||| ||||| ||||||||||||||    
T  35982556 gttagattaaatacatggttcagatttattcgaattaaaaatagaaacatatacaactactcacattcaat 35982626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4711648 - 4711725
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||||||||||||| ||||||||||||||| ||||||    
T  4711648 cattttgccgttgtatgctattaacttgggtgttgtgagtttgtttgcagattcatcctttatgtttttagtgatgtt 4711725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 6954618 - 6954541
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||||||||||||| |||||| |||||||||||||||    
T  6954618 cattttgccgttgtatgctattaacttgggtgctgtgagtttgtttgcagattcaccctttacgtttttagcgatgtt 6954541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 7546781 - 7546910
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctttat--gtttttagcga---tgttcatgctattatattatat 165  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||||||||||||||| ||||  |||||||||||   || |||||  ||| | ||  ||    
T  7546781 cattttgccgttgtatgctattaacttgggtgctgtgagtttgtttgcagattcacccttatacgtttttagcgatattgatcatgtcattgtctttgat 7546880  T
Q  166 gtattctatcaatttgaataaataaatatc 195  Q
    ||||| ||||||||||||||||| ||||||    
T  7546881 gtattttatcaatttgaataaatgaatatc 7546910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 400
Target Start/End: Original strand, 41418783 - 41418871
Alignment:
Q  312 aattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaattaaaaataagaacatgt 400  Q
    |||||||||  | |||| |||||||||| ||||||||  |||||| ||||| ||||||||||||||||||| | ||||  |||||||||    
T  41418783 aattagatcgtttatcgatggaccacgaaaaaaataccattagattaaataaatggttcagatttattcaaattaaaaggagaacatgt 41418871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 20987677 - 20987602
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctttatgtttttagcgatgt 146  Q
    |||||||  |||||||| ||||||||||||||||||||| ||||| | ||||||| ||||| || |||||||||||    
T  20987677 cattttgcagttgtatgctattaacttggatgatgtgagtttgttcgtagattcatctttacgtctttagcgatgt 20987602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 382
Target Start/End: Complemental strand, 43454199 - 43454117
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaa 382  Q
    |||||||| |||||||||| || |||| | |||||||||||| |||| || | | ||| |||||||||||||||||||||||||    
T  43454199 agggtgagggtccaattaggtccctcacctgtggaccacgag-aaaacaccgatggataaaatagatggttcagatttattcaa 43454117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 44959885 - 44959818
Alignment:
Q  82 ttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| |||||||||||||| |||||| || |||||||||||| |||||| |||||||||||||||    
T  44959885 ttgtatgctattaacttggatgctgtgagtttatttgcagattcaccctttacgtttttagcgatgtt 44959818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 4821963 - 4822049
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| ||||||| |||| |||| ||||||||||| ||||||||| ||||| |||||||||  ||||||||||||||| |||||    
T  4821963 ttttgtaggcattttgctgttatatgctattaacttgggtgatgtgagtttgttcgcagattcattctttatgtttttagcaatgtt 4822049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 8914878 - 8915006
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctt-tatgtttttagcgatgttcatgctattatattat---atg 166  Q
    |||||||  |||||||| ||||||||||  ||||||||| ||||| ||||||||||||| || |||||||||||| || ||| | ||||  | |   |||    
T  8914878 cattttgccgttgtatgctattaacttgagtgatgtgagtttgttcgcagattcaccttatacgtttttagcgatattgatgatgttattgtctctgatg 8914977  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  8914978 tattctatcaatttgaatgaatgaatatc 8915006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 30648630 - 30648544
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| || | ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||| ||||    
T  30648630 ttttataggcaatatgtcgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttatgtttttagcggtgtt 30648544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 50194266 - 50194180
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||||||  ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  50194266 ttttgtaggcattttgccgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcgatgtt 50194180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 14859656 - 14859777
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttcatgctattatattatatgtat 169  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| ||| ||  |||||||||||| ||||  |||| |||   ||||||    
T  14859656 cattttgtcgttgtatgctattaacttgggtgttgtgagattgttagcagattcaccctatacatttttagcgatg-tcat--tattgtatctgatgtat 14859752  T
Q  170 tctatcaatttgaataaataaatat 194  Q
    ||||||||||||||| ||| |||||    
T  14859753 tctatcaatttgaatgaatgaatat 14859777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 32701657 - 32701734
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||| |||||||||| |||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  32701657 cattttgccgttgtatgctatgaacttggatgctgtgagtttgttcgcagattcaccttttatatttttagcgatgtt 32701734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 40487491 - 40487568
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||||  ||| |||||||||||||||| || |||||| ||||| ||| |||||| |||||||||||||||||||||    
T  40487491 cattttgccgttatatgttattaacttgggtgttgtgagtttgttcgcaaattcactctttatgtttttagcgatgtt 40487568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 45568367 - 45568290
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| ||||||||| || || ||||||||| |||||| |||||||||||||||    
T  45568367 cattttgccgttgtatgctattaacttgggtgatgtgagtttattcgcagattcaccctttacgtttttagcgatgtt 45568290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 14746051 - 14746131
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttatt 379  Q
    |||||||| ||||||||| ||| |||  ||||||||||||| |||||  |   |||||||||||||||| |||||||||||    
T  14746051 agggtgagggtccaattaaatccctccccggtggaccacgaaaaaaacgccactagatgaaatagatggatcagatttatt 14746131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 21431779 - 21431855
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgt 146  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||||| |||| ||||||||||||||    
T  21431779 cattttgccgttgtatgatattaacttgggtgctgtgagattgttcgcagattcaccatttacgtttttagcgatgt 21431855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 25631415 - 25631351
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||||||||||||||||| ||||| ||||||||| ||||||  ||||||||| ||||    
T  25631415 tatgttattaacttggatgatgtgagtttgttcgcagattcatcctttacatttttagcggtgtt 25631351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 36906307 - 36906371
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  36906307 tatgctattaacttggatgatgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 36906371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 52923030 - 52922962
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  52923030 gttgtatgctattaacttggctgctgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 52922962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 38854925 - 38854866
Alignment:
Q  85 tatgttattaacttggatgatgtgagttgttt-gcagattca-cctttatgtttttagcg 142  Q
    |||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||||||||||    
T  38854925 tatgttattaacttggatgatgtgagttttttcgcatattcatcctttacgtttttagcg 38854866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 53807780 - 53807706
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||||||    
T  53807780 cattttgccgttgtatgctattaacttgggtggtgtgagtttgttcgcagattcatcctttacgtttttagcgat 53807706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 7448840 - 7448759
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||||||  | |||||| ||||||||| | ||||||||| ||||| ||||||||||| |||| ||||||| |||||||    
T  7448840 tagacattttgccgctgtatgctattaacttaggtgatgtgagtttgttcgcagattcaccatttacgtttttatcgatgtt 7448759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 7456982 - 7456901
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||||||  | |||||| ||||||||| | ||||||||| ||||| ||||||||||| |||| ||||||| |||||||    
T  7456982 tagacattttgccgctgtatgctattaacttaggtgatgtgagtttgttcgcagattcaccatttacgtttttatcgatgtt 7456901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 9797456 - 9797379
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||||| | ||||| |||||| ||| |||||||||||    
T  9797456 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgtttgtatattcaccctttacgttcttagcgatgtt 9797379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 21533731 - 21533654
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||| ||| |||| |||||||||||||||    
T  21533731 cattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcagatttaccttttacgtttttagcgatgtt 21533654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 27856340 - 27856405
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||| ||| ||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||||||    
T  27856340 gttgcatgctattaacttggatgatgtgagtttgttcgcagattcatcttttacgtttttagcgat 27856405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 40556868 - 40556945
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| |||  |||||| || |||||||| ||| ||||||||||| ||||||||||||||||||||    
T  40556868 cattttgccgttgtatgctatgcacttgggtgttgtgagtttgttcgcagattcaccctttatgtttttagcgatgtt 40556945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 196
Target Start/End: Original strand, 53508406 - 53508517
Alignment:
Q  90 tattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt---catgctattatattatatgtattctatcaatttgaat 184  Q
    |||||||||||||| ||||| || ||| ||||||||||| ||||||||||||||||| ||   |||| |||| |||   |||||||||||||| || |||    
T  53508406 tattaacttggatgttgtgattttgttcgcagattcaccctttatgtttttagcgatattgatcatgttattgtatctgatgtattctatcaaattaaat 53508505  T
Q  185 aaataaatatca 196  Q
     ||| |||||||    
T  53508506 gaatgaatatca 53508517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 54149157 - 54149234
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||||||| ||||||| ||| ||||||||||| ||| |||| |||| |||||| |||||||||||||||    
T  54149157 cattatgtcgttgtatgctattaacctgggtgatgtgagttagttcgcaggttcaccctttacgtttttagcgatgtt 54149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 3848808 - 3848744
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  3848808 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 3848744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 29922223 - 29922299
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||||  ||||||| ||||| |||||||| || ||| ||||||| |||||||    
T  29922223 cattttgccgttgtatgctattaacttggaaaatgtgagtttgttcgcagattccccattacgtttttaacgatgtt 29922299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 29971376 - 29971452
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||||  ||||||| ||||| |||||||| || ||| ||||||| |||||||    
T  29971376 cattttgccgttgtatgctattaacttggaaaatgtgagtttgttcgcagattccccattacgtttttaacgatgtt 29971452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 42460915 - 42460971
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    ||||||||||||||||| ||||||||||| |  |||||| ||||| |||||||||||    
T  42460915 cattttgttgttgtatgctattaacttgggtactgtgagtttgttcgcagattcacc 42460971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 46934824 - 46934888
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| | ||||||| |||||| |||||||||||||||    
T  46934824 tatgctattaacttggatgttgtgagtttgttcgtagattcatcctttacgtttttagcgatgtt 46934888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 52115943 - 52115903
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||||||| |||||||||||||||| || ||||||||    
T  52115943 cattttgttgttatatgttattaacttgggtgttgtgagtt 52115903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 303 - 419
Target Start/End: Original strand, 709336 - 709452
Alignment:
Q  303 tgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaacatgta 401  Q
    |||| ||||||||||||| |||| || |||| ||||||||||||||   ||||| ||||||||||||||||||||||| |||||||||| | || |||||    
T  709336 tgagggtccaattagatccctcaccgatggatcacgagaaaaataccaatagattaaatagatggttcagatttattcaaattaaaaatga-aatatgta 709434  T
Q  402 caattactcacattcaat 419  Q
    ||| ||||||||||||||    
T  709435 caactactcacattcaat 709452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 299 - 419
Target Start/End: Original strand, 10965240 - 10965361
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagattta-ttcaattaaaaataagaaca 397  Q
    |||||||  |||||||||  |||||||||||||||||| |||||||||||  |||||| |||||||||||||| ||||| || |||||||| |   ||||    
T  10965240 agggtgaaggtccaattaagtctctcatcggtggaccatgagaaaaataccattagattaaatagatggttcaaatttatttaaattaaaagtggaaaca 10965339  T
Q  398 tgtacaattactcacattcaat 419  Q
    ||||||| ||||||||||||||    
T  10965340 tgtacaactactcacattcaat 10965361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 415
Target Start/End: Original strand, 2138487 - 2138603
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattc-aattaaaaataagaaca 397  Q
    |||||||| |||||||||| || |||| ||||||||||||||||||||||   || || |||||||||||| |||||||||| |||||||| | | ||||    
T  2138487 agggtgagggtccaattaggtccctcaccggtggaccacgagaaaaataccaataaattaaatagatggttgagatttattcaaattaaaagtga-aaca 2138585  T
Q  398 tgtacaattactcacatt 415  Q
    ||||||| ||||||||||    
T  2138586 tgtacaactactcacatt 2138603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 24981109 - 24981022
Alignment:
Q  352 tagatgaaatagatggttcagatttattcaattaaaaataagaacatgtacaattactcacattcaattttcttaatttccacctatg 439  Q
    ||||| ||||||||| ||||||||||| ||||||||||||| || || ||||| |||||||||||||| || ||  ||||||||||||    
T  24981109 tagattaaatagatgattcagatttatccaattaaaaataaaaatatatacaactactcacattcaatcttattggtttccacctatg 24981022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 30894767 - 30894843
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||  ||||||||||| |||||| |||||||||||||||    
T  30894767 cattttgctgttgtatgctatcaacttggatgctgtgagtttattgcagattcatcctttacgtttttagcgatgtt 30894843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 26588398 - 26588317
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||| ||||||||| | ||||||||||||  ||||| |||||||||| |||| |||||| |||||||||||||||    
T  26588398 tagacattttgctgttgtatgctcttaacttggatgtcgtgagtttgtttgcagcttcaccctttaagtttttagcgatgtt 26588317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 67931 - 67846
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||| |||||    
T  67931 tttataggcattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctttacgtttttagcaatgtt 67846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 9341573 - 9341496
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| ||||||||| |||||    
T  9341573 cattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcaatgtt 9341496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 21426612 - 21426531
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||||||  |||||||| ||||||||||| || |||||| ||||| ||| ||||||| |||| |||||||||||||||    
T  21426612 tagacattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcatattcaccgtttacgtttttagcgatgtt 21426531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 24980373 - 24980430
Alignment:
Q  322 ctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttatt 379  Q
    |||| ||||||||||||||||||| |||  |||||||||||||||||| | |||||||    
T  24980373 ctcaccggtggaccacgagaaaaacactactagatgaaatagatggtttaaatttatt 24980430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 8102908 - 8102968
Alignment:
Q  86 atgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgat 144  Q
    ||||||||||||||| || |||||||| ||||||||||||||| |||| ||||||||||||    
T  8102908 atgttattaacttgggtgctgtgagtttgtttgcagattcaccttttacgtttttagcgat 8102968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 30608428 - 30608360
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||||||| |||||| ||||||||| ||||| |||||| ||||||| |||||||    
T  30608428 gttgtatgctattaacttggatgttgtgagattgtttgcaaattcatcctttacgtttttaacgatgtt 30608360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 30879639 - 30879600
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  30879639 attttgtcgttatatgttattaacttggatgatgtgagtt 30879600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 17237197 - 17237111
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgagt-tgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| ||||||| |||| ||||||||| |||||| |||||||||| ||||    
T  17237197 ttttgtaggcattatgtcgttatatgctattaacttggatgttgtgagtgtgttcgcagattcatcctttacgtttttagcggtgtt 17237111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 25064402 - 25064488
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  25064402 ttttgtaggcattatgtcgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 25064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 8113383 - 8113484
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaattaaaaataagaacat 398  Q
    |||| ||| |||||||||| ||  ||||| ||||||||||| || |||||   || || |||||||||||||| |||||||||| | ||||  |||||||    
T  8113383 agggcgagggtccaattaggtccttcatctgtggaccacgaaaataataccaataaattaaatagatggttcaaatttattcaaattaaaaggagaacat 8113482  T
Q  399 gt 400  Q
    ||    
T  8113483 gt 8113484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 20226019 - 20226096
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| |  |||||| ||||| ||| ||||| | ||||||||||||||||||||    
T  20226019 cattttgtcgttgtatgctattaacttgggtattgtgagtttgttcgcaaattcatcatttatgtttttagcgatgtt 20226096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 22120003 - 22120080
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| |  |||||| ||||| ||| ||||| | ||||||||||||||||||||    
T  22120003 cattttgtcgttgtatgctattaacttgggtattgtgagtttgttcgcaaattcatcatttatgtttttagcgatgtt 22120080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 31296988 - 31297065
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| |||||| ||||||||| |||||| ||| |||  |||||| |||| |||||||||||||||    
T  31296988 cattttgtcgttgtatgctattaatttggatgatttgagtttgttcgcattttcaccctttacgtttttagcgatgtt 31297065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 33053090 - 33053013
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||| ||||| |||||| ||||||||| |||||    
T  33053090 cattttgccgttgtatgctattaacttggatgctgtgagtttgttcgcatattcaccctttacgtttttagcaatgtt 33053013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 8497156 - 8497220
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  8497156 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 8497220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 12059662 - 12059598
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  12059662 tatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 12059598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 12654107 - 12654035
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga 143  Q
    ||||||| ||| |||| ||||||| ||||||||||||| ||||| ||||||||| | ||| ||||||||||||    
T  12654107 attttgtcgttttatgctattaacatggatgatgtgagtttgttcgcagattcatcatttttgtttttagcga 12654035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 28981346 - 28981422
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||||||||||| ||||||||| | || |||||| |||||  || ||||| |||||| |||||||||||||||    
T  28981346 attttgttgttgtatgctattaactttggtgttgtgagtttgttcacatattcaccctttacgtttttagcgatgtt 28981422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 29319790 - 29319722
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgagtt-gtttgcagattcaccttt-atgtttttagcgatgtt 147  Q
    |||||||| ||||||||||| || | |||||| ||| |||||||||||||| | |||||||||||||||    
T  29319790 gttgtatgctattaacttggttgttatgagtttgttcgcagattcaccttttacgtttttagcgatgtt 29319722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 33740489 - 33740409
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagc 141  Q
    |||||||| |||| ||  ||| |||| ||||||||||||| ||||||| ||||| ||||||||| |||||| |||||||||    
T  33740489 ttttataggcattatgccgttatatgctattaacttggataatgtgagtttgttcgcagattcatcctttacgtttttagc 33740409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 35001778 - 35001842
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||| | |||||| |||||||||||||||    
T  35001778 tatgctattaacttggatgttgtgagtttgttcgcagattaatcctttacgtttttagcgatgtt 35001842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 10929834 - 10929916
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    ||||||| ||||||||||||| ||| |||||||||||||| |||||| ||||||||| ||||| |||||||||||||||||||    
T  10929834 tttataggcattttgttgttgaatgctattaacttggatgctgtgagtttgtttgcatattcaccctttatgtttttagcgat 10929916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 1421853 - 1421929
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||| |||||||| ||||||    
T  1421853 cattttgtcgttgtatgctattaacttgggtgttgtgagtttgtttgcagattcacctttacgtttttagtgatgtt 1421929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 29173640 - 29173563
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||||||||||| | || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  29173640 cattttgttgttgtatgttattaactttggtgttgtgagtttgttcgcagattcatcctttacgtttttagcgatgtt 29173563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 10548356 - 10548404
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  10548356 tttataggcattttgttgttgtatgttattaacttggatgttgtgagtt 10548404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 2808361 - 2808298
Alignment:
Q  85 tatgttattaacttggatgatgtgagttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||||||||||||||||||  |||||||| |||||| |||||||||||||||    
T  2808361 tatgctattaacttggatgatgtgagttgttcacagattcatcctttacgtttttagcgatgtt 2808298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 8809452 - 8809576
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgttcatgctattatattatat 165  Q
    |||||||||||| |||||||| |||||||||||||| |||||| ||||| |||||| || | |||| |||||||| ||||||  ||    ||| ||||||    
T  8809452 tagacattttgtcgttgtatgctattaacttggatgttgtgagtttgttcgcagatccatcttttacgtttttagtgatgtt--tg----tatcttatat 8809545  T
Q  166 gtattctatcaatttgaataaataaatatca 196  Q
    ||| ||||||||||||||| ||| |||||||    
T  8809546 gtactctatcaatttgaatgaatgaatatca 8809576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 25508991 - 25508914
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||||||||||||||| ||||||||| ||||| ||||||||| | |||||||||||| |||||||    
T  25508991 cattttgccgttgtatgttattaacttgggtgatgtgagtttgttcgcagattcatcgtttatgtttttaccgatgtt 25508914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 31788633 - 31788710
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  31788633 cattttgccgttgtatgctattaacttggatgctgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 31788710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 4904072 - 4903997
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagc 141  Q
    |||||||||||| |||||||| |||||||||||||| |||||| ||||| | ||||||| |||||| |||||||||    
T  4904072 tagacattttgtcgttgtatgctattaacttggatgttgtgagtttgttcgtagattcagcctttacgtttttagc 4903997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 196
Target Start/End: Original strand, 14955702 - 14955835
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga---tgttcatgctattatatta 162  Q
    |||||||||| |  ||||||||||||||||| | || |||||| ||||| ||||||||| ||||||| ||||||||||   || ||||| |||| | |      
T  14955702 tagacattttatcattgtatgttattaacttaggtgttgtgagtttgttcgcagattcatcctttatatttttagcgatattgatcatgttattgtctct 14955801  T
Q  163 tatgtattctatcaatttgaataaataaatatca 196  Q
    |||||||||||||||||| ||| ||| |||||||    
T  14955802 tatgtattctatcaatttaaatgaatgaatatca 14955835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 8806036 - 8806122
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||||||  ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  8806036 ttttgtaggcattttgccgttatatgctattaacttggatgttgtgagattgttcgcagattcatcctttacgtttttagcgatgtt 8806122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 195
Target Start/End: Complemental strand, 10237139 - 10237011
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga---tgttcatgctattatattatatg 166  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| ||| || |||||||||||   || ||||| |||| | |   |||    
T  10237139 cattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctatacgtttttagcgatattgatcatgttattgtctctgatg 10237040  T
Q  167 tattctatcaatttgaataaataaatatc 195  Q
    |||||||||||||||||| ||| ||||||    
T  10237039 tattctatcaatttgaatgaatgaatatc 10237011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4778930 - 4779007
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  ||||||||||||||| |||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  4778930 cattttgccgttgtatgttattaatttgggtgctgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 4779007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 37876517 - 37876452
Alignment:
Q  84 gtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    ||||| ||||||||||| ||||| ||||| ||| ||||||||||| ||||||||||||||||||||    
T  37876517 gtatgctattaacttgggtgatgcgagtttgttcgcagattcaccatttatgtttttagcgatgtt 37876452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 16376116 - 16376172
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    ||||||| |||||||||  |||||||||||||||||||| ||||| |||||||||||    
T  16376116 cattttggtgttgtatgcgattaacttggatgatgtgagtttgttcgcagattcacc 16376172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 34128615 - 34128551
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtga-gttgtttgcagattcacc 127  Q
    ||||||| |||||||| |  |||||||||||||||||||  ||||| ||||||||||||||||||    
T  34128615 tttataggcattttgtcgcagtatgttattaacttggatattgtgaggttgtttgcagattcacc 34128551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 382
Target Start/End: Original strand, 7754022 - 7754105
Alignment:
Q  299 agggtgagagtccaattagatctctcatcggtggaccacgagaaaaatactgttagatgaaatagatggttcagatttattcaa 382  Q
    |||||||| |||||||||| || |||  ||||||| ||||| ||||||||   || || |||||||| ||||||||||||||||    
T  7754022 agggtgagggtccaattaggtccctccccggtggatcacgaaaaaaataccaataaataaaatagatagttcagatttattcaa 7754105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 7646655 - 7646729
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgat 144  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||||| |||| ||||||||||||    
T  7646655 cattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccttttacgtttttagcgat 7646729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 9986253 - 9986167
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  9986253 ttttgtaggcattatgtcgttatatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 9986167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 17249074 - 17248996
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||||||  |||||||| ||||||||||| || |||||| ||||| ||||||||| | |||| ||||||||||||    
T  17249074 tagacattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcatcatttacgtttttagcgat 17248996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 27949596 - 27949682
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||| ||  |||||||| |||||||||||||| |||||| ||||| | ||||||| | |||| |||||||||| ||||    
T  27949596 ttttatagacattatgacgttgtatgctattaacttggatgttgtgagtttgttcggagattcatcatttacgtttttagcggtgtt 27949682  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 35220505 - 35220579
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgat 144  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| ||| ||||| |||||| ||||||||||||    
T  35220505 cattttgtcgttgtatgctattaacttgggtgctgtgagtttgttcgcatattcaccctttacgtttttagcgat 35220579  T

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Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 4100513 - 4100589
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||||| ||| ||||||||||| |||| |||||||||||||||    
T  4100513 cattttgccgttgtatgatattaacttgg-tgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 4100589  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 5427792 - 5427715
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||| | |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| | |||||||||||||    
T  5427792 cattttatcgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcaccctttacgcttttagcgatgtt 5427715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 7677796 - 7677719
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| |||||||||  |||||| |||| |||||||||||||||    
T  7677796 cattttgccgttgtatgctattaacttgggtgctgtgagtttgtttgcaagttcaccttttacgtttttagcgatgtt 7677719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 84070 - 84006
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  84070 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 84006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 12554104 - 12554048
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc 127  Q
    |||||||| |||||||| ||||||||||| || |||||| ||||| |||||||||||    
T  12554104 cattttgtcgttgtatgatattaacttgggtgttgtgagtttgttcgcagattcacc 12554048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 14416429 - 14416461
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatca 196  Q
    ||||||||||||||||||||| |||||||||||    
T  14416429 atgtattctatcaatttgaatgaataaatatca 14416461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 21570301 - 21570233
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgagtt-gtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||| |||||||||| ||| ||| |||| ||| ||||||||| ||||||||||||||||| ||||    
T  21570301 gttgtatgctattaacttgaatgctgtaagtttgttcgcagattcagcctttatgtttttagcggtgtt 21570233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 27249040 - 27248976
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  27249040 tatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 27248976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 31580569 - 31580485
Alignment:
Q  60 agattttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcg 142  Q
    ||||||| ||| |||| ||  ||| |||| ||||||||||||||||||||| ||||| ||||||||| | |||| ||||||||||    
T  31580569 agattttgtaggcattatgccgttatatgctattaacttggatgatgtgagtttgttcgcagattcatcatttacgtttttagcg 31580485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 40659821 - 40659757
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  40659821 tatgctattaacttggatgttgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 40659757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 44441784 - 44441816
Alignment:
Q  164 atgtattctatcaatttgaataaataaatatca 196  Q
    ||||||||||||||||||||| |||||||||||    
T  44441784 atgtattctatcaatttgaatcaataaatatca 44441816  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 14082318 - 14082241
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| |||||||| ||||||||| ||||||| ||||| ||| ||||||||||| ||||||||||||||||||||    
T  14082318 cattttgtcgttgtatgctattaacttcgatgatgggagtttgttcgcagattcaccctttatgtttttagcgatgtt 14082241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 34945551 - 34945636
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| |||||||| |||||||| ||||||||||| || |||||| ||||| ||||||||| |||||| |||||||||||||||    
T  34945551 tttataggcattttgtcgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctttacgtttttagcgatgtt 34945636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 37986039 - 37985976
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcaccttt 130  Q
    |||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||| ||||    
T  37986039 tagacattttgtcgttgtatgctattaacttgaatgatgtgagtttgtttgcagattcatcttt 37985976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 13007395 - 13007472
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||||||||||||| |||||| |||||||||||||||    
T  13007395 cattttgccgttgtatgctattaacttgggtgctgtgagtttgtttgcagattcaccctttacgtttttagcgatgtt 13007472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 25980323 - 25980400
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  ||| |||| ||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  25980323 cattttgccgttatatgctattaacttgggtgatgtgagtttgtttgcagattcaccctttacgtttttagcgatgtt 25980400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 34881907 - 34881971
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| ||||    
T  34881907 tatgctattaacttggatgttgtgagtttgtttgcagattcatcctttatgtttttagcggtgtt 34881971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 20257607 - 20257521
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||| ||| |||||||||||||||||||||||||| |||||  |||||||| | |||| |||||||||||||||    
T  20257607 ttttgtaggcattatgtcgttatatgttattaacttggatgatgtgagtttgttcacagattcatcatttacgtttttagcgatgtt 20257521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 24229706 - 24229629
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| |||||||||| ||||| |||||||||||||||    
T  24229706 cattttgccgttgtatgctattaacttgggtgctgtgagtttgttcgcagattcactctttacgtttttagcgatgtt 24229629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 11976844 - 11976780
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||||| |||||| ||||| ||||||||| ||||||  ||||||||||||||    
T  11976844 tatgttattaacttggatgttgtgagtttgttcgcagattcatcctttacatttttagcgatgtt 11976780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 10332478 - 10332392
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| ||||||||  || |||| ||||||||||| ||||||||| |||||  |||||||| |||||| |||||||||||||||    
T  10332478 ttttgtaggcattttgtctttatatgctattaacttgggtgatgtgagtttgttcacagattcatcctttacgtttttagcgatgtt 10332392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 14211401 - 14211521
Alignment:
Q  80 tgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacctt-tatgtttttagcgatgtt---catgctattatattatatgtattctat 174  Q
    ||||||||| ||||||||||| || |||||||| ||| ||||||||||| | || |||||||||||| ||   ||||||||| | |   ||||||| |||    
T  14211401 tgttgtatgctattaacttgggtgttgtgagtttgttcgcagattcaccctatacgtttttagcgatattgatcatgctattgtctatgatgtattatat 14211500  T
Q  175 caatttgaataaataaatatc 195  Q
    |||||||||| ||| ||||||    
T  14211501 caatttgaatgaatgaatatc 14211521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 27266770 - 27266684
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||| ||||||| |||| |||||||||||||| |||||| ||||| ||||||||| | |||| |||||||||| ||||    
T  27266770 ttttgtaggcattatgttgttatatgctattaacttggatgctgtgagtttgttcgcagattcatcatttacgtttttagcggtgtt 27266684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 19121074 - 19121155
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||| ||||| | ||||||| |||||| |||||||||||||| ||||| ||||||||| |||||| ||||| || ||||||    
T  19121074 tagacgttttgctcttgtatgatattaatttggatgatgtgagtttgttcgcagattcaccctttacgttttcagagatgtt 19121155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 38597963 - 38598040
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  |||||||| ||||||||||| || |||||| ||||| ||| ||||| |||||| |||||||||||||||    
T  38597963 cattttgccgttgtatgctattaacttgggtgttgtgagtttgttcgcaaattcaccctttacgtttttagcgatgtt 38598040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 6012047 - 6011983
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||||||||| ||||||||| ||||| ||||||||| |||||| ||||||| |||||||    
T  6012047 tatgctattaacttgggtgatgtgagtttgttcgcagattcaccctttacgtttttaacgatgtt 6011983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 6281376 - 6281448
Alignment:
Q  73 attttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcga 143  Q
    |||||| |||| |||| ||||||| ||||||||||||| |||||  |||||||| ||||| ||||||||||||    
T  6281376 attttgctgttttatgctattaacatggatgatgtgagtttgttcacagattcatcctttttgtttttagcga 6281448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7241974 - 7242038
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  7241974 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 7242038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 7247149 - 7247213
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  7247149 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 7247213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 9113638 - 9113570
Alignment:
Q  81 gttgtatgttattaacttggatgatgtgagtt-gtttgcagattcacc-tttatgtttttagcgatgtt 147  Q
    |||||||| ||||||||||| || | |||||| ||| ||||||||||| |||| |||||||||||||||    
T  9113638 gttgtatgctattaacttgggtgttctgagtttgttcgcagattcaccctttacgtttttagcgatgtt 9113570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 11768189 - 11768253
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||||| ||||||||||||||| ||||| ||||||||| ||| || |||||||||||||||    
T  11768189 tatgctattatcttggatgatgtgagtttgttcgcagattcatcctatacgtttttagcgatgtt 11768253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Original strand, 13422112 - 13422176
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||| ||||| |||||| |||||||||||||||    
T  13422112 tatgctattaacttggatgttgtgagtttgttcgcatattcatcctttacgtttttagcgatgtt 13422176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 38961585 - 38961621
Alignment:
Q  64 tttatagacattttgttgttgtatgttattaacttgg 100  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  38961585 tttataggcattttgttgttttatgttattaacttgg 38961621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 39567432 - 39567476
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgagtt 112  Q
    |||||||||||| |||||||||||||| ||||| || ||||||||    
T  39567432 tagacattttgtcgttgtatgttattaccttgggtgttgtgagtt 39567476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 41184329 - 41184265
Alignment:
Q  85 tatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| |||||||||||||| |||||| ||||| ||||||||| |||||| |||||||||| ||||    
T  41184329 tatgctattaacttggatgctgtgagtttgttcgcagattcatcctttacgtttttagcggtgtt 41184265  T

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Target: scaffold0884 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0884
Description:

Target: scaffold0884; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 1895 - 1818
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||| ||||||||||||||||||||| || | |||| ||||| ||||||||| |||||| |||||||||||||||    
T  1895 cattttgctgttgtatgttattaacttgggtgttatgagtttgttcgcagattcaccctttacgtttttagcgatgtt 1818  T

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Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 1511 - 1588
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||||||  ||| |||| |||||||||||||| |||||| ||||||||||||||| |||||| |||||||||||||||    
T  1511 cattttgccgttttatgctattaacttggatgttgtgagtttgtttgcagattcaccctttacgtttttagcgatgtt 1588  T

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Target: scaffold0347 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 6193 - 6277
Alignment:
Q  68 tagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattcacc-tttatgtttttagcgatgttcat 150  Q
    ||||||||||||||||  | | |||||||||||||| |||||| ||||||||||||||||| ||||  ||||||| |||||||||    
T  6193 tagacattttgttgttacaagctattaacttggatgttgtgagtttgtttgcagattcaccttttacatttttagtgatgttcat 6277  T

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Target: scaffold0127 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 15659 - 15736
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgagtt-gtttgcagattcac-ctttatgtttttagcgatgtt 147  Q
    |||||||  ||| |||| ||||||||||| || |||||||| ||| |||||||||| |||||||||||||||||||||    
T  15659 cattttgccgttatatgctattaacttgggtgctgtgagtttgttcgcagattcactctttatgtttttagcgatgtt 15736  T

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Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 71222 - 71145
Alignment:
Q  72 cattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    ||||||||||||||||| ||||||||||| || ||| || ||||||| ||||| | |||||| |||||||||||||||    
T  71222 cattttgttgttgtatgctattaacttgggtgttgtaagtttgtttgtagattaatcctttacgtttttagcgatgtt 71145  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 58019 - 57933
Alignment:
Q  63 ttttatagacattttgttgttgtatgttattaacttggatgatgtgag-ttgtttgcagattca-cctttatgtttttagcgatgtt 147  Q
    |||| ||| |||||||  ||| |||| |||||||||||||| |||||| ||||| ||||||| | |||||| |||||||||||||||    
T  58019 ttttgtaggcattttgccgttatatgctattaacttggatgctgtgagtttgttcgcagatttatcctttacgtttttagcgatgtt 57933  T

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