View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_48 (Length: 445)
Name: NF1740_low_48
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 89 - 433
Target Start/End: Complemental strand, 8458881 - 8458536
Alignment:
| Q |
89 |
tcatttccaccaacttgaactcttggtggcttctttgttatatattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctcc |
188 |
Q |
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| T |
8458881 |
tcatttccaccaacttgaactcttggtggcttctttgttatatattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctcc |
8458782 |
T |
|
| Q |
189 |
aattacaccacaaaccacaagaggagttaatgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgata |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8458781 |
aattacaccacaaaccacaagaggagttaatgatttaatacgcataattaacaatgtatgctttctttttgttgcaaatataataatatgtgctttgata |
8458682 |
T |
|
| Q |
289 |
acttgctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcatcaatagattctatcctttgt |
387 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8458681 |
acttgctcattggccctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatcacttgtcatcaatagattctatcctttgt |
8458582 |
T |
|
| Q |
388 |
ttctttctatcttgttccatttaattattttcttaaagttgttttt |
433 |
Q |
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| T |
8458581 |
ttctttctatcttgttccatttaattattttcttaaagttgttttt |
8458536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 279 - 433
Target Start/End: Original strand, 776657 - 776812
Alignment:
| Q |
279 |
tgctttgataacttgctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcatcaatagattc |
377 |
Q |
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| T |
776657 |
tgctctgataacttgctcattggctctactacatgaccatgcttttatatatgctttggacttgcctttcatgaggggatcacttgtcatcaatagattc |
776756 |
T |
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| Q |
378 |
tatcctttgtttctttctatcttgttccatttaattattttcttaaagttgttttt |
433 |
Q |
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| T |
776757 |
tatcctttatttctttccatcttgttccatttaattattttcttaaagttgttttt |
776812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 269 - 433
Target Start/End: Original strand, 817869 - 818031
Alignment:
| Q |
269 |
taataatatgtgctttgataacttgctcattggctctactacatgcacatgcttttatatatgctttggacttgcctttcatgaggggatca-ttgtcat |
367 |
Q |
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||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
817869 |
taataatgtatgctttgataatttgctcattggctctactacatgaccatgcttttatatatgctttggacttgcctttcatgaggtgatcacttgtcat |
817968 |
T |
|
| Q |
368 |
caatagattctatcctttgtttctttctatcttgttccatttaattattttcttaaagttgttttt |
433 |
Q |
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|||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
817969 |
caatagattctatcttttct---tttctatcttgttccatttaattattgtcttaaagtttttttt |
818031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 131 - 275
Target Start/End: Original strand, 776481 - 776625
Alignment:
| Q |
131 |
tattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctccaattacaccacaaaccacaagaggagttaatgatttaatacg |
230 |
Q |
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|||| |||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |||||||||||| |
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| T |
776481 |
tattttcataaacgaccctcaaagacactgaatttgtaaagggatccaaaacatctccaattacaccacaaaccacaagagggttcattgatttaatacg |
776580 |
T |
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| Q |
231 |
cataattaacaatgtatgctttctttttgttgcaaatataataat |
275 |
Q |
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| T |
776581 |
cataattaataatgtattttttctttttgttgctaatataataat |
776625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 131 - 252
Target Start/End: Original strand, 817763 - 817884
Alignment:
| Q |
131 |
tattgtcataaacaatcctcaaagacactgaatttgtaaagggattcaaaacatctccaattacaccacaaaccacaagaggagttaatgatttaatacg |
230 |
Q |
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||||||||||||| | ||||||||||||||| |||||||||| | |||||| |||||||||||||||| ||| ||||||||| || |||||||||||| |
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| T |
817763 |
tattgtcataaacgactctcaaagacactgaacttgtaaaggggtccaaaacctctccaattacaccaccaacaacaagaggatttgttgatttaatacg |
817862 |
T |
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| Q |
231 |
cataattaacaatgtatgcttt |
252 |
Q |
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||||||||| |||||||||||| |
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| T |
817863 |
cataattaataatgtatgcttt |
817884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 8459353 - 8459293
Alignment:
| Q |
12 |
atactcttaacgtttagtgattgaaatttcaggaaacaaaatgacaattgtttacaagatg |
72 |
Q |
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| T |
8459353 |
atactcttaacgtttagtgattgaaatttcaggaaacaaaatgaaaattgtttacaagatg |
8459293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 775973 - 776023
Alignment:
| Q |
26 |
tagtgattgaaatttcaggaaacaaaatgacaattgtttacaagatgtgaa |
76 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| | ||||||||| |
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| T |
775973 |
tagttattgaaatttcaggaaacaaaattacaattgtttgctagatgtgaa |
776023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 776402 - 776430
Alignment:
| Q |
89 |
tcatttccaccaacttgaactcttggtgg |
117 |
Q |
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| T |
776402 |
tcatttccaccaacttgaactcttggtgg |
776430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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