View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_5 (Length: 778)
Name: NF1740_low_5
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 241 - 624
Target Start/End: Complemental strand, 14177026 - 14176643
Alignment:
| Q |
241 |
gttgagccccaatcgcctatgaaaggcatatcaatgaacagggacttatttttaacaaaaatgattgcttaaaaggctagtggaggtatgccgggttgta |
340 |
Q |
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| T |
14177026 |
gttgagccccaatcgcctatgaaaggtatatcgatgaacagggacttatttttgacaaaaatgattgcttaaaaggctagtggaggtatgcggggttgta |
14176927 |
T |
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| Q |
341 |
ccttgaccggatacgttgagcagagatctccttttcgctatgatcaatttgttgagcttcaatatatcaaaaaatataaaagttttttacttatgtattg |
440 |
Q |
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| T |
14176926 |
ccttgaccggatacgttgagcagagatctccttttcgctgtgatcaatttgatgagcttcaatatatcaaaaaatttaaaagttttttacttatgtattg |
14176827 |
T |
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| Q |
441 |
gttagtcaaaataataactctcttttagatatgatattataataagtaaatatttattttccctc--aaaaaagtaaatatttataggtattgaaactac |
538 |
Q |
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| T |
14176826 |
gttagtcaaaataataactctctttt--atatgatatgataataagtaaatatttattgtccctcaaaaaaaagtaaatatttataggtattgaaactac |
14176729 |
T |
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| Q |
539 |
aataaatgagatattgaacgattgatatgacaatattaacgaaccttttaatgtaaatgttcattttgattaacagaatgtataat |
624 |
Q |
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| T |
14176728 |
aataagtgagatattgaacgactgatatgacgatattaacgaaccttttaatgcaaatgttcattttgattaacagaatgtataat |
14176643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 14177582 - 14177384
Alignment:
| Q |
19 |
aaagtgtactccacagagctgtaaccaacaaggtgcattcacgaatgtccatggcaatgttttatgggccaaactcggacacgataattggtcctattca |
118 |
Q |
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| T |
14177582 |
aaagtgtactccacagagctgtaaccaacaaggtgcattcacgaatgtccatggcaatgttttatgggccaaactcggacacgataattggtcctattca |
14177483 |
T |
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| Q |
119 |
ggaattgatagatgaagaacaccctcaaaagtatagaaattatcgcttttctgacttcgttgaagaattctactgccacggaacaaagagtatgttgaa |
217 |
Q |
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| T |
14177482 |
ggaattgatagatgaagaacaccctcaaaagtatagaaattatcgcttttctgatttcgttgaagaattctactgccacggaacaaagagtatgttgaa |
14177384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 19 - 162
Target Start/End: Complemental strand, 14170620 - 14170477
Alignment:
| Q |
19 |
aaagtgtactccacagagctgtaaccaacaaggtgcattcacgaatgtccatggcaatgttttatgggccaaactcggacacgataattggtcctattca |
118 |
Q |
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| T |
14170620 |
aaagtgtacttcacagagctgtgaccaacaatgtgcaaccacgaatttcgatggcgatgttttatggaccaaacccagagacaataattggaccaattca |
14170521 |
T |
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| Q |
119 |
ggaattgatagatgaagaacaccctcaaaagtatagaaattatc |
162 |
Q |
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| T |
14170520 |
tgaattgatagatgaagaacaccctcccaagtacagaaattatc |
14170477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 14174357 - 14174213
Alignment:
| Q |
19 |
aaagtgtactccacagagctgtaaccaacaaggtgcattcacgaatgtccatggcaatgttttatgggccaaactcggacacgataattggtcctattca |
118 |
Q |
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| T |
14174357 |
aaagtgtaattcacagagctgccacaaataatgtgcatccacgaatgtcgatggcaatgtttttcgggccaaacccagagacaataattgagccaattca |
14174258 |
T |
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| Q |
119 |
ggaattgatagatgaagaacaccctcaaaagtatagaaattatcg |
163 |
Q |
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| T |
14174257 |
tgaattaatagatgatgaacaccctcccaagtacagaagttatcg |
14174213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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