View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_51 (Length: 440)
Name: NF1740_low_51
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_51 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 2601034 - 2600593
Alignment:
| Q |
1 |
ctttatctcattccattcaattaataatactaagaaaaatttgaatcaacggcgaaaagttaagagacagaaaaacatgaagtccgtctctat--gtgtt |
98 |
Q |
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| T |
2601034 |
ctttatctcattccattcaattaataatactgagaaaaatttgaatcaacgacgaaaagttaagagacagataaacatgaagtccgtctctatatgtgtt |
2600935 |
T |
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| Q |
99 |
aaagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaactttttctagtattcatagctcaaacatttggtatgt |
198 |
Q |
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| T |
2600934 |
gaagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaactttttctagtattgattgctcaaacatttggtatgt |
2600835 |
T |
|
| Q |
199 |
ttggacaatatcaaaccgtccaaatttctagcttattattcgaaatttaaaaagaacaacaaaaatttgcattgaaatcggatggttaagatgtgaccta |
298 |
Q |
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| T |
2600834 |
ttggacaatatcaaaccgtccaaatttctagcttattattcgaaatttaaaaagaacaacaaaaatttgcattgaaattggatggttaagatgtgaccta |
2600735 |
T |
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| Q |
299 |
ttgcgtgcagtcacactgcacacaatccaaacatggtaccgatcacaattgtggccttgccatcttggtttttatgtctctttgacctcatcagttgtat |
398 |
Q |
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| T |
2600734 |
ttgcgtgcagtcacactgcacacaatccaaacatggtaccaatcacaattgtggccttgccatcttggtttttatgtctctttgacctcatcagttgtat |
2600635 |
T |
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| Q |
399 |
ttgactgtgattctcaacaatatcaaggttcttgacgtgatc |
440 |
Q |
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| T |
2600634 |
ttgactgtgattctcaacaatatcaaggttcttgacgtgatc |
2600593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2573556 - 2573390
Alignment:
| Q |
1 |
ctttatctcattccattcaattaataatactaagaaaaat-ttgaatcaacggcgaaaagttaagagacagaaaaacatgaagtccgtctctatgtgtta |
99 |
Q |
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| T |
2573556 |
ctttatctcattccattcaattaatactattcagaaaaaagttgaatcagcgacgaaaagttaagatacaaaaaaacatgaagtccgtctctatgtgtta |
2573457 |
T |
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| Q |
100 |
aagacaccctcaaatgcagattaattcaattttttcatttctattttctgtcgctaattgaacttttt |
167 |
Q |
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| T |
2573456 |
gagacatcat-aattgcatagtaattcaattttttcatttctattttctgtcgctaattgaacttttt |
2573390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 260 - 440
Target Start/End: Complemental strand, 2573214 - 2573028
Alignment:
| Q |
260 |
aaaatttgcattgaaatcggatggttaagatgtgacctattgcgtgcagtcacactgcacacaatccaaac---atgg---taccgatcacaattgtggc |
353 |
Q |
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| T |
2573214 |
aaaatttgcattgaaatcagacggttaagatgtgacatattgcttgcagttacactgcacacaatctaaacccaatgtacataccgatcacaattgtggc |
2573115 |
T |
|
| Q |
354 |
cttgccatcttggtttttatgtctctttgacctcatcagttgtatttgactgtgattctcaacaatatcaaggttcttgacgtgatc |
440 |
Q |
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| T |
2573114 |
cttgccatcatggtttttaagtctccatgacctcgttggtcgtatctgactatgattctcaacagtatcaaggatcatgacgtgatc |
2573028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 2298846 - 2298888
Alignment:
| Q |
287 |
agatgtgacctattgcgtgcagtcacactgcacacaatccaaa |
329 |
Q |
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| T |
2298846 |
agatgtgactcattgcgtgcagtcacactacacacaatccaaa |
2298888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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