View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_52 (Length: 439)
Name: NF1740_low_52
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 40528798 - 40528992
Alignment:
| Q |
1 |
ctcacttctcaaacctctctttgttaccatctttgacgagtcagactatatttcttcaagcctgacattttcttatcctttcattcaaatctttttagta |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40528798 |
ctcaattctcaaacctctctttgttaccatctttgacgagtcagactatctttcttcaagcctgacattttcttatcctttcattcaaatctttttagta |
40528897 |
T |
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| Q |
101 |
caaatatagtaatccggaatgaaaatatagattaaaaacttaattttattttcgacatgtagtaaaatatagattaaactcaactaatatgtatt |
195 |
Q |
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| T |
40528898 |
caaatatagtaatccggaattaaaatatagattaaaaacttaattttattttcgacatgtagtaaaatatagattaaactcaactaatatgtatt |
40528992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 188 - 418
Target Start/End: Original strand, 40530290 - 40530513
Alignment:
| Q |
188 |
tatgtattgtttttaaaaaatttaagacaacaaacaatagattaatgcaatatattatactaataataataagtattataatttactttgaccnnnnnnn |
287 |
Q |
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| T |
40530290 |
tatgtattgtttttaaaaaatttaagacaataaa-------ttaatgcaatatattatacaaataataataagtattataatttactttgaccaaaaaaa |
40530382 |
T |
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| Q |
288 |
ngtattataatttactaattcagttttgattcgattttgaaaaaactaacatgaaatttgatctaatatcttaatgattttcacaaaatgacatctaaac |
387 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
40530383 |
agtattataatttactaatgcggttttgattcgattttgaaaaaactaacatgaaatttgatctaatatcttaatgattttcacaaaatgatatccaaac |
40530482 |
T |
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| Q |
388 |
gtctccactaatatttgtgttgtttggcctt |
418 |
Q |
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| T |
40530483 |
gtctccactaatatttgtgttgtttggcctt |
40530513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 31755919 - 31756008
Alignment:
| Q |
163 |
taaaatatagattaaactcaactaatatgtattgtttttaaaaaatttaagacaacaaacaatagattaatgcaatatattatactaataa |
253 |
Q |
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|||||||||| ||||| | || ||||| ||||| ||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||| |
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| T |
31755919 |
taaaatatagtttaaattaaattaataagtattttttttaaaat-tttaaaccaacaaacaatagattagtgcaatatattctactaataa |
31756008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 253
Target Start/End: Complemental strand, 821009 - 820973
Alignment:
| Q |
216 |
aacaaacaatagattaatgcaatatattatactaataa |
253 |
Q |
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| T |
821009 |
aacaaacaatagat-aatgcaatatattatactaataa |
820973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 201
Target Start/End: Original strand, 44289078 - 44289115
Alignment:
| Q |
164 |
aaaatatagattaaactcaactaatatgtattgttttt |
201 |
Q |
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||||||||||||||| | |||||||||||||||||||| |
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| T |
44289078 |
aaaatatagattaaattaaactaatatgtattgttttt |
44289115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 20940480 - 20940524
Alignment:
| Q |
214 |
acaacaaacaatagattaatgcaatatattatactaataataata |
258 |
Q |
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|||||||| ||||||| ||| ||||||||||||||||||| |||| |
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| T |
20940480 |
acaacaaataatagatgaatacaatatattatactaataaaaata |
20940524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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