View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_56 (Length: 425)
Name: NF1740_low_56
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 42576843 - 42577260
Alignment:
| Q |
1 |
gggtttccgttgcagagaaggtctcagaatgccaaatcacgaaaatggcgagcagttggaaatctaattcagcgagagtcgcacttcgttctattacccg |
100 |
Q |
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| T |
42576843 |
gggtttccgttgcagagaaggtctcagaatgccaaatcacgaaaatggcaagcatttggaaatctaattcagcgagagttgcacttcgttctattacccg |
42576942 |
T |
|
| Q |
101 |
gtccttggcggcggcggaatcagctacatctgctaaccaccacacttcttccattccctctcgactctcttccatccgtcatctccgcagttgccgagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42576943 |
gtccttggcggcggcggaatcagctacatctgctaaccacctcacttcttccattccctctcgactctcttccatctgtcatctccgcagttgccgagat |
42577042 |
T |
|
| Q |
201 |
cttatttccaggttaattac---ttagtttcattctc---actaatcacgtttctcttccattaaaccattatttaacagttatta-gctgctataatta |
293 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42577043 |
cttatttccaggttaattacttattagtttcattctcactactaatcacgtttctcttccattaaaccattatttaacagttattattctgctataatta |
42577142 |
T |
|
| Q |
294 |
cattgctctgtttcagccactccttagcgtctgcgttaacttcaactactaaccacacctcatatcgattctcctccgttcgttatgttcactttcgtcg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42577143 |
cattgctctgtttcagccactccttagcgtctgcgttaacttcaactactaaccacacctcatatcgattctcctccgttcgttatgttcactttcgtcg |
42577242 |
T |
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| Q |
394 |
ccgttactatgatcatat |
411 |
Q |
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| T |
42577243 |
ccgttactatgatcatat |
42577260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 42569798 - 42569894
Alignment:
| Q |
1 |
gggtttccgttgcagagaaggtctcagaatgccaaatc---acgaaaatggcgagcagttggaaatctaattcagcgagagtcgcacttcgttctat |
94 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| ||||||||| ||| || |||||||| ||||||||||||| |||||||| |||||| |
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| T |
42569798 |
gggtttccgttgtagagaaggtctcagaataccaaatcactacgaaaatgacgaacatttggaaatgtaattcagcgagaaccgcacttcattctat |
42569894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 42569915 - 42569990
Alignment:
| Q |
140 |
ccacacttcttccattccctctcgactctcttccatccgtcatctccgcagttgccgagatcttatttccaggtta |
215 |
Q |
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|||||||| |||| |||||||||||||||| || |||||||||| ||||||| |||||||| ||| ||||||||| |
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| T |
42569915 |
ccacactttttccgttccctctcgactctcctcggtccgtcatcttcgcagttaccgagatcatatctccaggtta |
42569990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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