View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_58 (Length: 398)
Name: NF1740_low_58
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 18568734 - 18568353
Alignment:
| Q |
1 |
cgacagatgccgattccaaaataaccgcaccatttatttgactcgaagagacctatattatggtaacatgccagtaagtttacatttcaaccgaagctga |
100 |
Q |
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| T |
18568734 |
cgacagatgccgattccaaaataaccccaccatttatttgacttgaagagacctgtatttcggtaacatgccaataagtttacatttcaaccgaagctga |
18568635 |
T |
|
| Q |
101 |
aaataacaatgataatagaaaccactattgagactcacagaatatgagaagctaaaatcacatttcgaccaggagagaacatcagtgtcatgtgagaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
18568634 |
aaataacaatgataatagaaaccactattgagactcacagaatatgagaagctaaaatcacatttcgaccaggagagaagatcggtgtcatgtgagaagc |
18568535 |
T |
|
| Q |
201 |
ctatgctcccggcactgcgccttacttcctgtgcagtcagggaacaga--accatattatcacacatatggttaattggttatacattaaatttcaactg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
18568534 |
ctatgctcccggcactgcgccttacttcctgtgcagtcagggaacaaaacaccacattatcacacataaggttaattggttatacatgaaatttcaacta |
18568435 |
T |
|
| Q |
299 |
caatccaacgaaaaatgaacaaccaaatatgaaccttcattggatgacttgctgtcttgcacttaacgtcactgccggtaac |
380 |
Q |
| |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18568434 |
caatccaacaaaaaatgaataaccaaatatgaaccttcattggatgacttgctgtcttgcacttaacgtcactgccggtaac |
18568353 |
T |
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