View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_6 (Length: 707)
Name: NF1740_low_6
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 629; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 18 - 700
Target Start/End: Complemental strand, 21182150 - 21181471
Alignment:
| Q |
18 |
ctaatgtgttatgggttgatggtaattccaatttatctattcagggtgttttaaatcgagtggatttgcaactcaaaagagaccatgacacactttcaat |
117 |
Q |
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| T |
21182150 |
ctaatgtgttatgggttgatggtaattccaatttatctattcagggtgttttaaatcgagtggatttgcaactcaaaagagaccatgacacactttcaat |
21182051 |
T |
|
| Q |
118 |
cggtagcaattctaggttggtattggaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaag |
217 |
Q |
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| T |
21182050 |
cggtagcaattctaggttggtattggaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaag |
21181951 |
T |
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| Q |
218 |
tgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtgacccttgtcactgtctcaatggttttgaaccgtttgatgctgatt |
317 |
Q |
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| T |
21181950 |
tgcggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgcgacccttgtcactgtctcaatggttttgaaccgtttgatgctgatt |
21181851 |
T |
|
| Q |
318 |
cttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcagcagtaaaaatagcatagatggattcaaacgtttcagttcagt |
417 |
Q |
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| T |
21181850 |
cttggagaaaggggaataggtcagctggatgtgtcaggataaacgaattatcctgcaacagtaaaaatagcatagatggattcaaacgtttcagtttagt |
21181751 |
T |
|
| Q |
418 |
tgaattacctccatacgaagtgaacctacagttcgatgcgctctcccagtgtaacaacacttgttacaccaattgttcttgtgttgcttatgcttatgat |
517 |
Q |
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| T |
21181750 |
tgaattacctccatatgaagtgaacctacagttcgatgcgctctcacagtgtaacaacacttgttacaccaattgttcttgtgttgcttatgcttatgat |
21181651 |
T |
|
| Q |
518 |
tttaacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactgatattcaagacggtaataataataataaaccaaattttt |
617 |
Q |
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| T |
21181650 |
tttaacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactgaaattcaagaccgtaataata---ataaaccaaattttt |
21181554 |
T |
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| Q |
618 |
atctcagacttgctggctcagacttgcttcccccaagtaagttgaaggaacctactttatctttccttttctttttcatatca |
700 |
Q |
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| T |
21181553 |
atctcagacttgctggctcggacttgcttcccccaagtaagttgaaggaacctactttacctttccttttcttttttatatca |
21181471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 143 - 290
Target Start/End: Original strand, 23177945 - 23178092
Alignment:
| Q |
143 |
gaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgcggaacaaacaattcttgtggaa |
242 |
Q |
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| T |
23177945 |
gaagcgtctggggatcttaaataccaagcctggtatgaggaatctaagcaatggatttttctacggtcatcaacgtgtgtgacaaacaattcatgtggat |
23178044 |
T |
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| Q |
243 |
ttttttccatttgtaattcgcaagatcgtgacccttgtcactgtctca |
290 |
Q |
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| T |
23178045 |
ttttttccatttgtaatccgcaaactcctgacccttgtcaatgtctca |
23178092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 360
Target Start/End: Original strand, 23187055 - 23187294
Alignment:
| Q |
121 |
tagcaattctaggttggtattggaagtgtctggggatcttaaataccaaggctggtcagaggaatctaagcgttgggtttctctacaatcatccaagtgc |
220 |
Q |
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| T |
23187055 |
tagcaattctcggtttatattagaagcgtctggggatcttaaataccaagcctggtccgaggaatataggcaatggatttttctacagttttatcagtgt |
23187154 |
T |
|
| Q |
221 |
ggaacaaacaattcttgtggaattttttccatttgtaattcgcaagatcgtgacccttgtcactgtctcaatggttttgaaccgtttgatgctgattctt |
320 |
Q |
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| T |
23187155 |
gtgacaaacaattcatgtggacatttttctgtttgtactccaaaagctgttgatgcttgtcaatgtctctacggtttcgaaaagtatgattccgattctt |
23187254 |
T |
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| Q |
321 |
ggagaaaggggaataggtcagctggatgtgtcaggataaa |
360 |
Q |
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| T |
23187255 |
ggagtaagggggataggtcagcgggatgtgtcagaataaa |
23187294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 491 - 579
Target Start/End: Original strand, 23187428 - 23187519
Alignment:
| Q |
491 |
tgttcttgtgttgcttatgcttatgatttt---aacggcaactgcaagttgtggaatgatcaagtacagactctgaagaacatctcaactga |
579 |
Q |
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| T |
23187428 |
tgttcttgtgttctttatgcttatgatatttctaacggtaactgcatgctgtggaatgatcaagtaccgactctgaagaacacctcgactga |
23187519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 561
Target Start/End: Original strand, 23178273 - 23178348
Alignment:
| Q |
489 |
attgttcttgtgttgcttatgcttatgatttta---acggcaactgcaagttgtggaatgatcaagtacagactct |
561 |
Q |
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| T |
23178273 |
attgctcttgtgttgcttatgcttatgatttttttgacggtgcctgcatgttatggaatgatcaagtaccgactct |
23178348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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