View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_60 (Length: 390)
Name: NF1740_low_60
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 31741879 - 31741515
Alignment:
| Q |
1 |
caaactgaaatccaaataaccaggataaattattaccacaacatcatacacaatattcactctagactcaagattcctaaaaatagatgaccataaaaat |
100 |
Q |
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| T |
31741879 |
caaactgaaatccaaataaccaggataaattattaccacaacatcatacacaatattcactctagactcaagattcctaaaaatagatgaccataaaaat |
31741780 |
T |
|
| Q |
101 |
aaaagacatcccttttatnnnnnnnnnnnnnnnnnnttaattaatttgggaaattgaaaagtggctaaattgggagatgaattatcatacaatccaaaag |
200 |
Q |
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| T |
31741779 |
aaaagatatcccttttataaaaaaaaaaaa------ttaattaatttgggaaattgaaaagtggctaaattgggagatgaattatcatacaatccaaaag |
31741686 |
T |
|
| Q |
201 |
cagcaatctgatgagtttcattgccggcggcgaaagtgatcggcgtatcacgatcaccgacgagtctccggccatgaaaaacgcgatctctatgaaccat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
31741685 |
cagcaatctgatgagtttcattgccggcggcgaaagtgatcggcgtatcacgatcatcggcgagtctccggccatgaaaaacgcgatctctatgaaccat |
31741586 |
T |
|
| Q |
301 |
agcagcatagtattgaggagttcctttatgaggtaacaattcatcattaccaatgcctagaatctcggtta |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31741585 |
agcagcatagtattgaggagttcctttatgaggtaacaattcatcattaccaatgcctagaatctcggtta |
31741515 |
T |
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