View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_63 (Length: 379)
Name: NF1740_low_63
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 30371103 - 30371456
Alignment:
| Q |
19 |
catcatcccctagattggaccgcttcaccgaaggaagatccgaaacagaacgtttcgatagcatcaataagtcgagcctctcagtagcgttcatgccaca |
118 |
Q |
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| T |
30371103 |
catcatcacctagattggaccgcttcaccgaaggaagatccgaaacagaacgtttcgataacatcaaaaagtcgagcctctcagtagcgttcatgccaca |
30371202 |
T |
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| Q |
119 |
tgaagggtgtaatccactggatcgcaccctcctcggcaatggttgagactgaacttttggtagctcaactaagaaatagattttcttagccttgagttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30371203 |
tgaagggtgtaatccactggatcgcaccctcctcggcaatggttgagactgaacttttggtagctcaactaagaaatagattttcttagccttgagttgt |
30371302 |
T |
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| Q |
219 |
tggtgaggttcaagtggtttagccctaagaccaaaatgcttcactgcttgtgaatccaaaagagcatgaccaggatagtgtttaactacatcgtttgctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30371303 |
tggtgaggttcaagtggtttagccctaagaccaaaatgcttcactgcttgtgaatccaaaagagcatgaccaggatagtgtttaactacatcgtttgctt |
30371402 |
T |
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| Q |
319 |
tagctggagtttttagcttgaaggtttctccatctattttcattacctttgctt |
372 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30371403 |
tagctggagtttttagcttgaaagtttctccatctattttcattacctttgctt |
30371456 |
T |
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