View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_65 (Length: 371)

Name: NF1740_low_65
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_65
NF1740_low_65
[»] chr1 (9 HSPs)
chr1 (9-252)||(7101275-7101525)
chr1 (298-355)||(7101217-7101274)
chr1 (66-254)||(24241474-24241661)
chr1 (67-252)||(16253026-16253211)
chr1 (66-180)||(21356790-21356901)
chr1 (66-251)||(34773347-34773532)
chr1 (64-180)||(39744169-39744282)
chr1 (79-253)||(41942790-41942962)
chr1 (66-171)||(2344965-2345068)
[»] chr5 (11 HSPs)
chr5 (66-253)||(10719742-10719929)
chr5 (66-251)||(2976378-2976555)
chr5 (65-253)||(20524529-20524716)
chr5 (66-175)||(8026463-8026574)
chr5 (66-180)||(33758790-33758901)
chr5 (65-229)||(34849437-34849600)
chr5 (89-174)||(23151436-23151518)
chr5 (80-171)||(30319817-30319906)
chr5 (90-252)||(37872128-37872291)
chr5 (63-150)||(36442077-36442160)
chr5 (210-251)||(20654461-20654502)
[»] chr2 (11 HSPs)
chr2 (79-254)||(30706075-30706250)
chr2 (66-251)||(3870020-3870208)
chr2 (66-180)||(11028775-11028887)
chr2 (65-180)||(6512079-6512196)
chr2 (118-251)||(4848117-4848248)
chr2 (65-251)||(37721444-37721629)
chr2 (66-251)||(38879513-38879697)
chr2 (70-166)||(36400857-36400952)
chr2 (66-159)||(29685491-29685582)
chr2 (66-180)||(28734070-28734181)
chr2 (203-251)||(34480055-34480103)
[»] chr7 (9 HSPs)
chr7 (81-253)||(46023139-46023311)
chr7 (69-251)||(30783412-30783589)
chr7 (66-252)||(34998524-34998710)
chr7 (65-251)||(8541426-8541609)
chr7 (67-159)||(39187980-39188068)
chr7 (67-251)||(45627340-45627527)
chr7 (197-252)||(32677070-32677125)
chr7 (134-229)||(15878700-15878796)
chr7 (66-180)||(10544987-10545100)
[»] chr3 (10 HSPs)
chr3 (67-249)||(47169243-47169429)
chr3 (70-180)||(1994850-1994957)
chr3 (134-253)||(39170903-39171021)
chr3 (65-180)||(22220205-22220318)
chr3 (65-251)||(45805455-45805645)
chr3 (192-253)||(25199064-25199125)
chr3 (66-180)||(2008395-2008508)
chr3 (87-180)||(39056875-39056964)
chr3 (122-180)||(28297723-28297782)
chr3 (192-228)||(14785046-14785082)
[»] chr4 (9 HSPs)
chr4 (69-251)||(17056614-17056793)
chr4 (65-249)||(20679770-20679956)
chr4 (78-180)||(47833503-47833603)
chr4 (69-252)||(39503431-39503616)
chr4 (70-254)||(46550629-46550813)
chr4 (114-251)||(47541737-47541876)
chr4 (87-180)||(36364868-36364954)
chr4 (199-251)||(36364605-36364657)
chr4 (199-252)||(15827051-15827104)
[»] scaffold1339 (1 HSPs)
scaffold1339 (65-180)||(57-170)
[»] chr8 (10 HSPs)
chr8 (61-251)||(36132667-36132854)
chr8 (66-251)||(30208195-30208379)
chr8 (65-251)||(40719821-40720010)
chr8 (82-250)||(31333091-31333258)
chr8 (70-180)||(42056680-42056787)
chr8 (114-251)||(1162045-1162183)
chr8 (66-170)||(35179156-35179258)
chr8 (197-255)||(16782307-16782365)
chr8 (70-168)||(39402038-39402136)
chr8 (71-128)||(6048653-6048710)
[»] chr6 (4 HSPs)
chr6 (66-180)||(7080149-7080262)
chr6 (201-248)||(2141175-2141222)
chr6 (199-253)||(994876-994930)
chr6 (79-120)||(994874-994915)
[»] scaffold0830 (1 HSPs)
scaffold0830 (95-180)||(5379-5462)
[»] scaffold0009 (2 HSPs)
scaffold0009 (189-251)||(25955-26017)
scaffold0009 (66-159)||(25684-25773)
[»] scaffold0288 (1 HSPs)
scaffold0288 (199-254)||(17974-18030)
[»] scaffold0095 (1 HSPs)
scaffold0095 (70-168)||(35366-35464)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 7101525 - 7101275
Alignment:
Q  9 ataatactattaaataacagaaaaattgtttgaaacaaagttaagaaagtaatttttgaggtattctcctatggtcataagaccaaatcaatagtgtttg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |    
T  7101525 ataatactattaaataacagaaaaattgtttgaaacaaagttaagaaagtaatttttgaggtattctcccatgatcataagaccaaatcaatagtgttgg 7101426  T
Q  109 gtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttacta-----ttnnnnnnnntatttctt--tatgt 201  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |     |         ||||||||  |||||    
T  7101425 aacatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttaaaagatggtccttaaaaatatttctttatatgt 7101326  T
Q  202 gtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    |||||||||||||||||||||||| |||| ||||||| |||||||||||||    
T  7101325 gtgtgaccaaacactttttatttgatcacgtaaccatgttagaatttctct 7101275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 7101274 - 7101217
Alignment:
Q  298 cttcaaagtaattgtggtgcaacaaccactgcattattgcacaattcttatcacttac 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7101274 cttcaaagtaattgtggtgcaacaaccactgcattattgcacaattcttatcacttac 7101217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 66 - 254
Target Start/End: Original strand, 24241474 - 24241661
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| | ||||||| | ||||||||||||| |||||||    ||||||||||||||||||  |||| ||||||||||||||| | |||||||||    
T  24241474 gaggtattcttccatggtcacatgaccaaatcaataatgtttgg----acacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaa 24241569  T
Q  165 tttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctta 254  Q
    ||||||| ||| ||||        || || ||||  |||||||||||||| ||||||| |||||||   | |||||||||||||||||||||    
T  24241570 tttcctccttattattaaaaaaaatacttttttatgtgtgtgtgaccaaatactttttctttggtcctgtgaccatattagaatttctctta 24241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 16253026 - 16253211
Alignment:
Q  67 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaat 165  Q
    ||||||||| | ||| ||| ||||||||||||||| |||||||    | ||||||||||||||||  |||| ||||||||||||||| | ||||||||||    
T  16253026 aggtattcttccatgttcacaagaccaaatcaataatgtttgg----agacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaat 16253121  T
Q  166 ttcctctttactattnnnnnnnn-tatttctttatgtg--tgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    |||||| ||| ||||         | ||| ||||||||  |||||||||||||||||| |||| |||  | | |||||||||||||||||    
T  16253122 ttcctccttattattaaaaaaatatttttttttatgtgtgtgtgaccaaacactttttctttgatcatgtgatcatattagaatttctct 16253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 21356790 - 21356901
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    ||||||||||  |||||||| ||||||||||||||| |||||||    ||||||| ||||||||||  || | ||||||||||||||| | |||||||||    
T  21356790 gaggtattcttttatggtcacaagaccaaatcaataatgtttgg----acacacatataaaaagattctcttcaaaatattcaatcatcttttttatcaa 21356885  T
Q  165 tttcctctttactatt 180  Q
    ||| ||| ||| ||||    
T  21356886 ttttctcattattatt 21356901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 251
Target Start/End: Complemental strand, 34773532 - 34773347
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| | ||| ||| |||||||| |||||| ||||||  ||||||||||  |||||||||  |||| ||||||||||||||| | |||||| ||    
T  34773532 gaggtattcttccatgatcacaagaccaactcaataatgtttgcacatacacaca--taaaaagattctcctcaaaatattcaatcatattttttattaa 34773435  T
Q  165 tttcctctttactattnnnnnnnntatttctttatg--tgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||||| |||| ||||         | |||||| ||  ||||||| |||||||||||| |||||||   ||||||||||||||||||||    
T  34773434 tttcct-tttattattaaaaaaaacacttctttttgtatgtgtgatcaaacactttttctttggtcctgtaaccatattagaatttctc 34773347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 180
Target Start/End: Complemental strand, 39744282 - 39744169
Alignment:
Q  64 ttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatc 162  Q
    |||||||||||| ||||||||| ||||||||||||||| |||||||    ||||||| ||||||||||  | || | |||| ||||||| || |||||||    
T  39744282 ttgaggtattcttctatggtcacaagaccaaatcaataatgtttgg----acacacatataaaaagattcttctcagaatagtcaatcattttttttatc 39744187  T
Q  163 aatttcctctttactatt 180  Q
    | ||||||| ||| ||||    
T  39744186 attttcctccttattatt 39744169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 41942790 - 41942962
Alignment:
Q  79 atggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctctttact 177  Q
    ||||||| ||||||||||||||| |||||||    ||||| ||||||||||||  || |  ||||||||||||||   |||||||||||||||| ||| |    
T  41942790 atggtcacaagaccaaatcaataatgtttgg----acacatacataaaaagattctcttcgaaatattcaatcatcatttttatcaatttcctccttatt 41942885  T
Q  178 attnnnnnnnntatttctttatgtgtg--tgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
    |||        || |||||||||||||  |||||||||||||| | |||||||   | ||||||||||||||||||||    
T  41942886 att-aaaaaaatacttctttatgtgtgtatgaccaaacactttatctttggtcgtgtgaccatattagaatttctctt 41942962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 2344965 - 2345068
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| |  |||||| ||||||||||||||| |||||||  |||  |||||||||||| ||  || |||||| |||||||||| | |||||||||    
T  2344965 gaggtattcttccttggtcacaagaccaaatcaataatgtttgg--ataagcacacataaaaa-attttctttaaaaaattcaatcatcttttttatcaa 2345061  T
Q  165 tttcctc 171  Q
    |||||||    
T  2345062 tttcctc 2345068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 66 - 253
Target Start/End: Original strand, 10719742 - 10719929
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 163  Q
    |||||||||| | |||||||||||||||||| ||||||||||||    ||||||||||||||| |||||||||||||||||||||||  || ||||||||    
T  10719742 gaggtattcttccatggtcataagaccaaattaatagtgtttgg----acacacacataaaaaaatggtccttaaaatattcaatcatttttttttatca 10719837  T
Q  164 atttcctctttactattnnnnnnnntatttctttatgtg--tgtgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
    |||| ||||||||||||        ||||||||||||||  |||||||||||||||||||||||||||  | |||||| || ||||||||||    
T  10719838 attttctctttactattaaaaaaaatatttctttatgtgtttgtgaccaaacactttttatttggtcatgtgaccataataaaatttctctt 10719929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 66 - 251
Target Start/End: Complemental strand, 2976555 - 2976378
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatcaa 164  Q
    |||||||||| | |||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||| || |||||||||    
T  2976555 gaggtattcttccatggtcataagaccaaatcaatagtgtttgg------acacacataaaaagatggtccttaaaatattcaatcattttttttatcaa 2976462  T
Q  165 tttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||| |||||| ||||         | || |||||||||||||||||||||  ||||||| ||||  | ||||||||||||||||||    
T  2976461 tttcttctttaatattaaaaaaaa-aattatttatgtgtgtgaccaaacac--tttatttagtcatgtgaccatattagaatttctc 2976378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 253
Target Start/End: Complemental strand, 20524716 - 20524529
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatca 163  Q
    ||||||||||| | ||| ||| || || ||||||||| |||||||    |||||||||| |||||||| |  |||||||||||||||| || ||||||||    
T  20524716 tgaggtattcttccatgatcacaaaactaaatcaatactgtttgg----acacacacatcaaaagatgatgtttaaaatattcaatcattttttttatca 20524621  T
Q  164 atttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
    |||||||||||| ||||        ||||||||||  ||||||||||||||||||||||||||| |||  | | ||||||||||||||||||    
T  20524620 atttcctctttattattaaaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttgatcatgtgatcatattagaatttctctt 20524529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 8026463 - 8026574
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttt----tat 161  Q
    |||||||||| |||| |||| ||||||||||||||| ||||||| |   || |||||||||||||||||| |||||||||||||||||| |||    |||    
T  8026463 gaggtattcttctatagtcacaagaccaaatcaatactgtttggacg--catacacataaaaagatggtctttaaaatattcaatcatttttttttatat 8026560  T
Q  162 caatttcctcttta 175  Q
    ||||||||||||||    
T  8026561 caatttcctcttta 8026574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 33758790 - 33758901
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| | ||||||| |||| |||||||||| |||||||    ||||||||||||||||||  |||| ||| ||||||||||| | |||||||||    
T  33758790 gaggtattcttccatggtcacaagatcaaatcaatactgtttgg----acacacacataaaaagattctcctcaaactattcaatcatcttttttatcaa 33758885  T
Q  165 tttcctctttactatt 180  Q
    |||||| |||| ||||    
T  33758886 tttcctttttattatt 33758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 34849437 - 34849600
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 162  Q
    ||||||||| |  |||||||||||||| ||||||||| ||||| |    ||||||| ||||||||||  |||| ||||||||||||||  || |||||||    
T  34849437 tgaggtatttttttatggtcataagacgaaatcaataatgtttcg----acacacatataaaaagattctcctcaaaatattcaatcatctttttttatc 34849532  T
Q  163 aatttcctctttactatt-nnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtca 229  Q
    ||||| ||| ||| ||||         || || |||| ||||||||||||||||||||| ||||||||    
T  34849533 aattttctccttattattaaaaaaaaatacttttttacgtgtgtgaccaaacactttttctttggtca 34849600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 174
Target Start/End: Complemental strand, 23151518 - 23151436
Alignment:
Q  89 gaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctcttt 174  Q
    ||||||||||||| |||||||    ||||||||||||||||||  |||| |||||||||||||||   ||||||||||||| |||||    
T  23151518 gaccaaatcaataatgtttgg----acacacacataaaaagattctcctcaaaatattcaatcatcatttttatcaatttcttcttt 23151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 30319817 - 30319906
Alignment:
Q  80 tggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctc 171  Q
    |||||| ||||||||||||||| |||||||  |||| | |||||||||| ||  || ||||||||||||||||| | ||||||||||||||||    
T  30319817 tggtcacaagaccaaatcaataatgtttgg--atacgcgcacataaaaa-attctctttaaaatattcaatcatcttttttatcaatttcctc 30319906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 252
Target Start/End: Complemental strand, 37872291 - 37872128
Alignment:
Q  90 accaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaatttcctctttactattnnnnnnn 187  Q
    |||||||||||| | ||||| ||  |||||||||||||||||  || | ||||||||||||||  || |||||||||||||||| ||| ||||           
T  37872291 accaaatcaataatatttggaca--cacacacataaaaagattctcatcaaaatattcaatcatctttttttatcaatttcctccttattatt-aaaaat 37872195  T
Q  188 ntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
     ||||| ||||  |||||||||||||| ||||||| |||||||   | | |||||||||||||||||    
T  37872194 atatttttttatgtgtgtgtgaccaaatactttttctttggtcctctgatcatattagaatttctct 37872128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 36442077 - 36442160
Alignment:
Q  63 tttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaat 150  Q
    ||||||| ||||| | ||| ||| |||||||||||||||||| |||| |||| || |    |||||||||||| ||||||||||||||    
T  36442077 tttgagggattcttccatgctcacaagaccaaatcaatagtgattggacataaacgc----aaaaagatggtctttaaaatattcaat 36442160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 20654502 - 20654461
Alignment:
Q  210 aaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||||||||||||||||  | ||||||||||||||||||    
T  20654502 aaacactttttatttggtcatgtgaccatattagaatttctc 20654461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 254
Target Start/End: Complemental strand, 30706250 - 30706075
Alignment:
Q  79 atggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca------ttcttttatcaatttcctct 172  Q
    ||||||| |||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||      || |||||||||||||||||    
T  30706250 atggtcacaagaccaaatcaatagtgtttgg------acacacataaaaagatggtccttaaaatattcaatcatttttttttttttatcaatttcctct 30706157  T
Q  173 ttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctta 254  Q
    ||||||||        ||||||||| ||||||||||||||||||||||||||| |||  | ||||||||| |||||||||||    
T  30706156 ttactattaaaaaaaatatttctttgtgtgtgtgaccaaacactttttatttgatcatgtgaccatattaaaatttctctta 30706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 66 - 251
Target Start/End: Original strand, 3870020 - 3870208
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| | ||||||| ||||||||||||||| ||||| | || ||||| ||||||||||||  |||| ||||||||||||||| | |||||||||    
T  3870020 gaggtattcttccatggtcacaagaccaaatcaataatgttttgacacacacagacataaaaagattctcctcaaaatattcaatcatcttttttatcaa 3870119  T
Q  165 tttcctctttactatt--nnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||| ||| ||||          || ||||||||||||||||||||||||||||| |||||||   | ||||||||||||||||||    
T  3870120 tttcctccttattattaaaaaaaaaatacttctttatgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 3870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 11028775 - 11028887
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 163  Q
    |||||||||| | || |||| ||||||||||||||| |||||||    ||||||||||||||||||  |||||||||||||||||||  || ||||||||    
T  11028775 gaggtattcttccatcgtcaaaagaccaaatcaataatgtttgg----acacacacataaaaagattctccttaaaatattcaatcatctttttttatca 11028870  T
Q  164 atttcctctttactatt 180  Q
    |||||||| ||| ||||    
T  11028871 atttcctccttattatt 11028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 6512196 - 6512079
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca----ttctttta 160  Q
    ||||||||| | | ||||||| |||||||||||||||||||||||  | |||||||||||||||||||  |  |||||||||||||||    || |||||    
T  6512196 tgaggtattattccatggtcacaagaccaaatcaatagtgtttgg--acacacacacataaaaagatgaactctaaaatattcaatcattttttttttta 6512099  T
Q  161 tcaatttcctctttactatt 180  Q
    ||||||||||||||| ||||    
T  6512098 tcaatttcctctttattatt 6512079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 4848248 - 4848117
Alignment:
Q  118 acacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactt 217  Q
    |||||| |||||||| || |||||||||||||||||| ||||||| ||||||| |||| ||||        ||||| |||||||||| |||||| |||||    
T  4848248 acacatgaaaagatgatcattaaaatattcaatcatttttttatccatttcctttttattatt--aaaaaatatttttttatgtgtgggaccaaccactt 4848151  T
Q  218 tttatttggtcacataaccatattagaatttctc 251  Q
    |||||||| |||  | | ||||||||||||||||    
T  4848150 tttatttgatcatgtgatcatattagaatttctc 4848117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 37721444 - 37721629
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 162  Q
    ||||||||||| | ||||||| ||||||||||||||| | |||||    |||| | |||||||||||  || | ||||||||||||||  || |||||||    
T  37721444 tgaggtattcttccatggtcacaagaccaaatcaataatatttgg----acacgcgcataaaaagattctcttcaaaatattcaatcatttttttttatc 37721539  T
Q  163 aatttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||||| ||| ||||        || |||||||  |||||||||||||||||||||| ||| ||| | | ||||||||||||||||||    
T  37721540 aatttcctccttattatt-aaaaaaataattctttatgtgtgtgtgaccaaacactttttctttagtctcgtgaccatattagaatttctc 37721629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 251
Target Start/End: Original strand, 38879513 - 38879697
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 163  Q
    |||||||||| | || |||| |||||||||| |||| |||||||    ||||||||||||||||||  |||| |||||||| |||||  || ||||||||    
T  38879513 gaggtattcttccatagtcacaagaccaaattaataatgtttgg----acacacacataaaaagattctcctcaaaatattaaatcatctttttttatca 38879608  T
Q  164 atttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcaca--taaccatattagaatttctc 251  Q
    |||| ||| | | ||||        || |||||||||||| |||||||||| ||||| |||||||| |  | ||||||||||||||||||    
T  38879609 attttctcctcattatt-aaaaaaatacttctttatgtgtatgaccaaacattttttctttggtcatatgtgaccatattagaatttctc 38879697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 36400857 - 36400952
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatt 166  Q
    |||||| | ||||||  ||||||||||||||| ||||||  ||  |||||||||||||||||  |||| ||||||||||||||| | |||||||||||    
T  36400857 tattcttccatggtctcaagaccaaatcaataatgtttgaaca--cacacacataaaaagattctcctcaaaatattcaatcatcttttttatcaatt 36400952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 159
Target Start/End: Complemental strand, 29685582 - 29685491
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 159  Q
    |||||||||| | ||||||| | |||||||  || |||||||||||  ||||||||||||||| ||  |||| |||||||||||| ||| ||||    
T  29685582 gaggtattcttccatggtcacatgaccaaagaaaaagtgtttggtc--acacacacataaaaaaattctcctcaaaatattcaataattttttt 29685491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 28734181 - 28734070
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 163  Q
    |||||||||| | | ||||| ||||||||||||||| |||||||    ||||||||||||||| ||  |||| |||||| ||| |||  || ||||||||    
T  28734181 gaggtattcttccacggtcacaagaccaaatcaataatgtttgg----acacacacataaaaa-attctcctcaaaatactcactcatctttttttatca 28734087  T
Q  164 atttcctctttactatt 180  Q
    ||||| |||||| ||||    
T  28734086 atttcttctttattatt 28734070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 34480103 - 34480055
Alignment:
Q  203 tgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||||||||||||||||| |||||||   | ||||||||||||||||||    
T  34480103 tgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 34480055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 46023139 - 46023311
Alignment:
Q  81 ggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 180  Q
    ||||| ||||||||||||||| ||||||| ||  ||||||||||||||||||||  |||||||||||||||||| |||||||||||| || |||||||||    
T  46023139 ggtcacaagaccaaatcaatattgtttggaca--cacacacataaaaagatggtttttaaaatattcaatcatttttttatcaattttctttttactatt 46023236  T
Q  181 nnnnnnnntatttctttat--gtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
            |||||||||||  |||| |||||||||| ||||||||||||||  | ||||||||||||||||||||    
T  46023237 aaaataaatatttctttatgcgtgtatgaccaaacattttttatttggtcatctgaccatattagaatttctctt 46023311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 30783589 - 30783412
Alignment:
Q  69 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttc 168  Q
    ||||||| ||||||||| ||||| |||| ||||||||||||      ||||||||||||||||||| ||||||||||| ||| ||| |||||||||||||    
T  30783589 gtattcttctatggtcagaagactaaattaatagtgtttgg------acacacataaaaagatggttcttaaaatatttaattatttttttatcaatttc 30783496  T
Q  169 ctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||  ||||        ||||||||||  |||||||||||||||||||||||||||||||  | ||||| ||||||||||||    
T  30783495 ctctttcttatt-aaaaaaatatttctttatgtgtgtgtgaccaaacactttttatttggtcatgtgaccattttagaatttctc 30783412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 252
Target Start/End: Original strand, 34998524 - 34998710
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcatt-cttttatcaa 164  Q
    |||||||||| | ||||||| ||||||||||||||| |||||||  | ||||||| ||||||||||  |||| ||||||||||||||||  |||||||||    
T  34998524 gaggtattcttccatggtcacaagaccaaatcaataatgtttgg--acacacacatataaaaagattctcctcaaaatattcaatcattatttttatcaa 34998621  T
Q  165 tttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    ||| ||| ||| ||||        ||||||||||  |||||||||||||| ||||||| |||| |||  | |||||||||||||||||||    
T  34998622 ttttctccttattatt-aaaaaaatatttctttatgtgtgtgtgaccaaatactttttctttgatcatgtgaccatattagaatttctct 34998710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 251
Target Start/End: Original strand, 8541426 - 8541609
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt--atc 162  Q
    |||| ||||||  |||||||| ||||||||||||||| ||||||     |||||||| |||||||||  |||| |||||||||||||||| ||||  |||    
T  8541426 tgagatattcttttatggtcacaagaccaaatcaataatgtttga----acacacacgtaaaaagattctcctcaaaatattcaatcattattttttatc 8541521  T
Q  163 aatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||||| ||| ||||        || ||||||||||||||||||||||||| ||| |||| ||  |||||||||||| ||||||||    
T  8541522 aatttcctccttattattaaaaaaa-tacttctttatgtgtgtgaccaaacactatttctttgatcctataaccatattaaaatttctc 8541609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 39188068 - 39187980
Alignment:
Q  67 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 159  Q
    ||||||||| | ||||||| ||||||||||||||||| |||||    |||||| |||||||||||||||||||||||||||||||||| ||||    
T  39188068 aggtattcttccatggtcagaagaccaaatcaatagtatttgg----acacacgcataaaaagatggtccttaaaatattcaatcattttttt 39187980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 251
Target Start/End: Complemental strand, 45627527 - 45627340
Alignment:
Q  67 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatcaat 165  Q
    ||||||||| | ||||||| | ||||||||||||||||||| | || ||||||| | ||||| || |||||||||||||| ||||| || ||||||||||    
T  45627527 aggtattcttccatggtcacaggaccaaatcaatagtgttttgacacacacacata-aaaaaaattgtccttaaaatatttaatcattttttttatcaat 45627429  T
Q  166 ttcctctttactatt-nnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||| | || ||||         ||||||||||  |||||||||||||||| ||||||||||||||  | ||||| ||||||||||||    
T  45627428 ttcctttatattattaaaaaaaaatatttctttatgtgtgtgtgaccaaacagtttttatttggtcatgtgaccattttagaatttctc 45627340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 32677070 - 32677125
Alignment:
Q  197 tatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    |||||||||||||||||| |||||||||| |||  | |||||||||||||||||||    
T  32677070 tatgtgtgtgaccaaacattttttatttgatcatgtgaccatattagaatttctct 32677125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 15878796 - 15878700
Alignment:
Q  134 tccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttat--gtgtgtgaccaaacactttttatttggtca 229  Q
    ||||||||||||||||| ||| ||||||||||||  |||||| ||||        |||||||| ||  ||||||||||||||||||||||||||||||    
T  15878796 tccttaaaatattcaattattgttttatcaatttagtctttattattaaaaaaa-tatttcttgatttgtgtgtgaccaaacactttttatttggtca 15878700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 10544987 - 10545100
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattct---tttatc 162  Q
    |||||||||| | | | ||| |||||| |||||||||| |||||    | ||||||||||||||||  |  |||||||||||||||||| |   ||||||    
T  10544987 gaggtattcttccacgatcacaagaccgaatcaatagtatttgg----agacacacataaaaagattatttttaaaatattcaatcattttttatttatc 10545082  T
Q  163 aatttcctctttactatt 180  Q
    ||||||||||||| ||||    
T  10545083 aatttcctctttattatt 10545100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 67 - 249
Target Start/End: Original strand, 47169243 - 47169429
Alignment:
Q  67 aggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-------ttctttt 159  Q
    |||||||||  ||| ||||||||||||||||||||||||||||  | ||||||||||||||||| ||||| |||||||||||||||       || ||||    
T  47169243 aggtattcttttatagtcataagaccaaatcaatagtgtttgg--acacacacacataaaaagagggtccataaaatattcaatcatttttttttttttt 47169340  T
Q  160 atcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttc 249  Q
    |||||||||||||||| ||||        |||||||||||||||||||| |||||||||||||||||||| |  ||||||||| ||||||    
T  47169341 atcaatttcctctttattatt-aaaaaattatttctttatgtgtgtgactaaacactttttatttggtcatacgaccatattaaaatttc 47169429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 1994957 - 1994850
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 168  Q
    |||||| ||||||||| ||||||||||||||| |||||||    ||| ||||| ||||||||  |||| ||||||||||||||| | ||||||||||| |    
T  1994957 tattctactatggtcacaagaccaaatcaataatgtttgg----acaaacacacaaaaagattctcctgaaaatattcaatcatcttttttatcaattac 1994862  T
Q  169 ctctttactatt 180  Q
    ||||||| ||||    
T  1994861 ctctttattatt 1994850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 39171021 - 39170903
Alignment:
Q  134 tccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttatgtgtgtgaccaaacactttttatttggtcacata 233  Q
    ||||||||||| ||||||||| |||||||||||| || |||| ||||        |||||||||||||||||||||||||| | |||||||| ||   |     
T  39171021 tccttaaaatactcaatcattattttatcaattttctttttattattaaataaa-tatttctttatgtgtgtgaccaaacattatttatttgatcttgtg 39170923  T
Q  234 accatattagaatttctctt 253  Q
    ||||||||||||||||||||    
T  39170922 accatattagaatttctctt 39170903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 22220205 - 22220318
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 162  Q
    ||||||||||| | ||||||| |||| |||||||||| ||||||    |||||||||||||||||||  | || ||||||||||||||  || |||||||    
T  22220205 tgaggtattcttccatggtcaaaagatcaaatcaataatgtttg----tacacacacataaaaagattcttctcaaaatattcaatcatctttttttatc 22220300  T
Q  163 aatttcctctttactatt 180  Q
    ||||||||| ||| ||||    
T  22220301 aatttcctccttattatt 22220318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 45805645 - 45805455
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttt------ 158  Q
    ||||||||||| | ||| | | |||| |||||||||||||||||     |||||||||||||||||||||| |||||||||| ||| ||| |||          
T  45805645 tgaggtattcttccatgattacaagatcaaatcaatagtgtttgc----acacacacataaaaagatggtctttaaaatatttaattattttttatttat 45805550  T
Q  159 -tatcaatttcctctttactattnnnnnnnntatttctttatgtgt--gtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
     ||||||||||||||||| |||          |||| |||||||||  ||||||||||||||||||||||||||  | ||||||||||||||||||    
T  45805549 ttatcaatttcctctttattataaaaaaaac-atttgtttatgtgtatgtgaccaaacactttttatttggtcatgtgaccatattagaatttctc 45805455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 25199064 - 25199125
Alignment:
Q  192 ttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
    |||||||| |||||||||||||||||||| |||||||   | ||||||||||||||||||||    
T  25199064 ttctttatatgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctctt 25199125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 2008395 - 2008508
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||| ||||| | ||| ||| ||||||||||||||| | ||||| ||  |||||| ||||||||||  |||| ||||||||||||||| | |||||||||    
T  2008395 gaggcattcttccatgatcacaagaccaaatcaataatatttggaca--cacacatataaaaagattctcctcaaaatattcaatcatcttttttatcaa 2008492  T
Q  165 tttcctctttactatt 180  Q
    ||| ||| ||| ||||    
T  2008493 ttttctccttattatt 2008508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 39056964 - 39056875
Alignment:
Q  87 aagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 180  Q
    ||||||||||| ||| |||||||    ||||||||||||||||||  |||| |||||||||||||||  ||||||| |||| ||| ||| ||||    
T  39056964 aagaccaaatctataatgtttgg----acacacacataaaaagattttcctcaaaatattcaatcatctttttatcgattttctccttaatatt 39056875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 122 - 180
Target Start/End: Original strand, 28297723 - 28297782
Alignment:
Q  122 ataaaaagatggtccttaaaatattcaatcatt-cttttatcaatttcctctttactatt 180  Q
    ||||||||||  ||||||| |||||| |||||| ||||||||||||||||||||| ||||    
T  28297723 ataaaaagattctccttaacatattcgatcatttcttttatcaatttcctctttattatt 28297782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 228
Target Start/End: Original strand, 14785046 - 14785082
Alignment:
Q  192 ttctttatgtgtgtgaccaaacactttttatttggtc 228  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  14785046 ttctttatgtgtgtgtccaaacactatttatttggtc 14785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 17056614 - 17056793
Alignment:
Q  69 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttc 168  Q
    ||||||| | ||||||| ||||||||||||||||||||||   ||||||||| ||||||| || |||||||||||||| ||||||| |||||||||||||    
T  17056614 gtattcttccatggtcacaagaccaaatcaatagtgtttga--atacacacatataaaaa-attgtccttaaaatatttaatcatttttttatcaatttc 17056710  T
Q  169 ctctttactattnnnnnnnntatttctttatgtgtg--tgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||| ||||        ||||||||||||||||  ||||||||||| ||||||||||||   | ||||| ||||||||||||    
T  17056711 ctctttattatt-aaaaaaatatttctttatgtgtgtatgaccaaacac-ttttatttggtcgtgtgaccattttagaatttctc 17056793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 20679956 - 20679770
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca-ttcttttatca 163  Q
    |||||||||||   ||||||  |||| |||||||||||||||||| || ||||||| | ||||| |||||| |||||||||||||| | || ||||||||    
T  20679956 tgaggtattctttcatggtctcaagatcaaatcaatagtgtttggacacacacacata-aaaaaaatggtctttaaaatattcaattattttttttatca 20679858  T
Q  164 atttcctctttactattnnnnnnnntatttctttatg--tgtgtgaccaaacactttttatttggtcacataaccatattagaatttc 249  Q
    |||||||||||| ||||        ||||||||||||  |||||||  ||||||||||||||| ||||  | ||||||||||||||||    
T  20679857 atttcctctttattattaaaaaaaatatttctttatgtatgtgtgattaaacactttttatttcgtcatctgaccatattagaatttc 20679770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 180
Target Start/End: Original strand, 47833503 - 47833603
Alignment:
Q  78 tatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttact 177  Q
    |||||||  ||||||||||| |||||| |||| |||||||  |||||||||||   |||| |||||||||||||||| |||||||||||||||||||| |    
T  47833503 tatggtcgcaagaccaaatctatagtggttggacatacac--acataaaaagaccatcctcaaaatattcaatcattattttatcaatttcctctttatt 47833600  T
Q  178 att 180  Q
    |||    
T  47833601 att 47833603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 39503616 - 39503431
Alignment:
Q  69 gtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaa---tcattcttttatcaat 165  Q
    ||||||| ||||||||| ||||| ||||||||||||||||   | ||| ||||||||||||||| || |||||||||| ||   |  || ||||||||||    
T  39503616 gtattcttctatggtcacaagactaaatcaatagtgtttg--aacacatacacataaaaagatgatctttaaaatatttaatttttttttttttatcaat 39503519  T
Q  166 ttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    |||||||||| ||||        ||||||||||  ||||||||| ||||||||||||||||  |||  | ||||||||| |||||||||    
T  39503518 ttcctctttattatt-aaaaaaatatttctttatgtgtgtgtgatcaaacactttttatttaatcatgtgaccatattaaaatttctct 39503431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 254
Target Start/End: Complemental strand, 46550813 - 46550629
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt-atcaatttc 168  Q
    |||||| | ||||||| ||||||||||||||| |||||    | ||||| ||||||||||||  ||||  ||||||||||||||  |||| ||||||||     
T  46550813 tattcttccatggtcacaagaccaaatcaataatgttt----aaacacatacataaaaagattctcctctaaatattcaatcatcatttttatcaatttt 46550718  T
Q  169 ctctttactattnnnnnnnn-tatttctttatgtgtgtg--accaaacactttttatttggtcacataaccatattagaatttctctta 254  Q
    ||||||| ||||         || |||||||||||||||  |||||||||||||| |||||||   | |||||||||||||||||||||    
T  46550717 ctctttattattaaaaaaaaatacttctttatgtgtgtgtgaccaaacactttttctttggtcttgtgaccatattagaatttctctta 46550629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 47541876 - 47541737
Alignment:
Q  114 acacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctctttactattnnnnnnnntatttcttta--tgtgtgtgacca 210  Q
    ||||||||||||||||||  |||| ||||||||||||||| | |||||||||||||||  ||| ||||        ||||| ||||  ||||||||||||    
T  47541876 acacacacataaaaagattttcctcaaaatattcaatcatcttttttatcaatttccttcttattatt-aaaaaaatatttttttatgtgtgtgtgacca 47541778  T
Q  211 aacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||||||||| |||| || | | ||||||||||||||||||    
T  47541777 aacactttttctttgatctcgtgaccatattagaatttctc 47541737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 36364954 - 36364868
Alignment:
Q  87 aagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 180  Q
    ||||||||||||||| |||||||    ||||||| ||||||| |||||||||||||||||| || ||  |||||||||||| ||||||||||||    
T  36364954 aagaccaaatcaataatgtttgg----acacacatataaaaatatggtccttaaaatattc-attat--ttttatcaattttctctttactatt 36364868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 36364657 - 36364605
Alignment:
Q  199 tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||||||||||||||| |||||||||| |||| | ||||||||| ||||||||    
T  36364657 tgtgtgtgaccaaacattttttatttgatcacgtgaccatattaaaatttctc 36364605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 15827104 - 15827051
Alignment:
Q  199 tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctct 252  Q
    ||||| |||||||||||| ||| ||| ||| | |||||||||||||||||||||    
T  15827104 tgtgtatgaccaaacactatttctttagtcccgtaaccatattagaatttctct 15827051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1339 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1339
Description:

Target: scaffold1339; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 180
Target Start/End: Complemental strand, 170 - 57
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaa 164  Q
    ||||||||||| | ||| ||| ||||||||||||||||||||||| ||  |||| |||||||||||| ||| | |||||||||||||||| |||||||||    
T  170 tgaggtattcttccatgatcacaagaccaaatcaatagtgtttggaca--cacatacataaaaagatagtcttaaaaatattcaatcatttttttatcaa 73  T
Q  165 tttcctctttactatt 180  Q
    |||| |||||| ||||    
T  72 tttcatctttattatt 57  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 61 - 251
Target Start/End: Original strand, 36132667 - 36132854
Alignment:
Q  61 tttttgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt- 159  Q
    |||| |||||||||| |||| |||| ||||| |||| |||||| |||||    | |||||||||||||||||||  |||||||||| ||||||| ||||     
T  36132667 ttttagaggtattcttctatagtcacaagactaaattaatagtatttgg----atacacacataaaaagatggtttttaaaatatttaatcatttttttt 36132762  T
Q  160 atcaatttcctctttactattnnnnnnnntatttctttatgtgtgtg--accaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    || ||||||||||| | ||||        |||||||||||||||||   |||||||||||||||||||| || || ||||||||||||||||||    
T  36132763 attaatttcctctt-attattaaaaaaa-tatttctttatgtgtgtataaccaaacactttttatttggccatatgaccatattagaatttctc 36132854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 251
Target Start/End: Original strand, 30208195 - 30208379
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| | ||||||||||||||||||||||| |||||||  | ||| | ||||||||||||  ||| | |||||||||||||| | |||||||||    
T  30208195 gaggtattcttccatggtcataagaccaaatcaataatgtttgg--acacatatacataaaaagattctcc-tcaaatattcaatcatcttttttatcaa 30208291  T
Q  165 tttcctctttactattnnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||| ||| ||||         | |||||||  |||||||||||||||||||||| |||||||   | ||||||||||||||||||    
T  30208292 tttcctccttattattaaaaaaac-acttctttatgtgtgtgtgaccaaacactttttctttggtcctgtgaccatattagaatttctc 30208379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 251
Target Start/End: Complemental strand, 40720010 - 40719821
Alignment:
Q  65 tgaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatc 162  Q
    ||||||||||| | ||||||| ||||  |||| |||| ||||||| ||  |||||||||||||||||  |||| ||||||||||||||  || |||||||    
T  40720010 tgaggtattcttccatggtcaaaagattaaattaataatgtttggaca--cacacacataaaaagattctcctcaaaatattcaatcatctttttttatc 40719913  T
Q  163 aatttcctctttactattnnnnnnnntatttctttatgtg----tgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||||| ||| ||||        || |||||||||||    |||||||||||||||||| ||||||||    ||||||||||||||||||    
T  40719912 aatttcctccttattatt-taaaaaatacttctttatgtgtgtatgtgaccaaacactttttctttggtcatgcgaccatattagaatttctc 40719821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 250
Target Start/End: Complemental strand, 31333258 - 31333091
Alignment:
Q  82 gtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttcctctttactatt 180  Q
    |||| ||||||||||||| | ||||||||  |||||||||||||||||||  | |||||||||||||||||| | |||||||| ||| ||| ||| ||||    
T  31333258 gtcacaagaccaaatcaaaa-tgtttggt--tacacacacataaaaagattttacttaaaatattcaatcatcttttttatcagttttctccttattatt 31333162  T
Q  181 nnnnnnnntatttcttta--tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttct 250  Q
            ||||||||||  |||||||||||||||||| ||| |||| |||  | |||||||||||||||||    
T  31333161 -aaaaaaatatttctttatgtgtgtgtgaccaaacactatttctttgatcatgtgaccatattagaatttct 31333091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 180
Target Start/End: Original strand, 42056680 - 42056787
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaatttc 168  Q
    |||||| | ||||||| ||||||||||||||| |||||||    ||||| ||||||||||||  || ||||||||||||||||| | ||||||||||||     
T  42056680 tattcttccatggtcacaagaccaaatcaataatgtttgg----acacaaacataaaaagattctctttaaaatattcaatcatcttttttatcaatttt 42056775  T
Q  169 ctctttactatt 180  Q
    ||| ||| ||||    
T  42056776 ctccttattatt 42056787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 1162183 - 1162045
Alignment:
Q  114 acacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactattnnnnnnnntatttctttatgtgtgtg--accaa 211  Q
    |||||||||||||| |||  |||| ||||||||||||   | | |||||||||||||||||| ||||        ||||||||||||||||||  |||||    
T  1162183 acacacacataaaaggattctcctcaaaatattcaatgtctttcttatcaatttcctctttattattaaaaaaa-tatttctttatgtgtgtgtgaccaa 1162085  T
Q  212 acactttttatttggtcacataaccatattagaatttctc 251  Q
    ||||||||| ||| |||  || ||||||| ||||||||||    
T  1162084 acactttttctttagtcctatgaccatataagaatttctc 1162045  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 35179156 - 35179258
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatca 163  Q
    ||||||||||   ||||||||||||||||||||||| |||||||    ||||||| ||||||||||  | || |||||||||||| |  || ||||||||    
T  35179156 gaggtattctttcatggtcataagaccaaatcaataatgtttgg----acacacatataaaaagattcttctcaaaatattcaataatttttttttatca 35179251  T
Q  164 atttcct 170  Q
    |||||||    
T  35179252 atttcct 35179258  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 16782365 - 16782307
Alignment:
Q  197 tatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctcttaa 255  Q
    |||||||||| ||||||||| |||||||||||  || | |||||||||||||| |||||    
T  16782365 tatgtgtgtgtccaaacactatttatttggtcttatgatcatattagaatttcgcttaa 16782307  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 39402136 - 39402038
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaattt 167  Q
    |||||| | ||||||| ||||||||||||||| | ||||  |||||| |||  |||||||||  |||| ||||||||||||||  || ||||||||||||    
T  39402136 tattcttccatggtcacaagaccaaatcaataatatttgaacatacataca--taaaaagattctcctcaaaatattcaatcatctttttttatcaattt 39402039  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 6048710 - 6048653
Alignment:
Q  71 attctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaa 128  Q
    ||||| ||||||||| ||   ||||| ||||||||||||||| |||||||||||||||    
T  6048710 attcttctatggtcacaaacacaaatgaatagtgtttggtcacacacacacataaaaa 6048653  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 7080149 - 7080262
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcat-tcttttatcaa 164  Q
    |||||||||| ||||||||| | ||||||||||||| |||||||  | ||||||||||||||||||  || | |||||||||||| || | |||||||||    
T  7080149 gaggtattcttctatggtcacatgaccaaatcaataatgtttgg--acacacacacataaaaagattctcttcaaaatattcaataatcttttttatcaa 7080246  T
Q  165 tttcctctttactatt 180  Q
    |||| |||||| ||||    
T  7080247 tttcgtctttaatatt 7080262  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 2141222 - 2141175
Alignment:
Q  201 tgtgtgaccaaacactttttatttggtcacataaccatattagaattt 248  Q
    |||||||||||||||||||| |||| ||| || |||||||||||||||    
T  2141222 tgtgtgaccaaacactttttctttgatcatatgaccatattagaattt 2141175  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Original strand, 994876 - 994930
Alignment:
Q  199 tgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctctt 253  Q
    |||||||||||||||||| |||||||||||   | ||||| ||||||||||||||    
T  994876 tgtgtgtgaccaaacactatttatttggtcttgtgaccatgttagaatttctctt 994930  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 994915 - 994874
Alignment:
Q  79 atggtcataagaccaaatcaatagtgtttggtcatacacaca 120  Q
    ||||||| |||||||||| ||||||||||||||| |||||||    
T  994915 atggtcacaagaccaaataaatagtgtttggtcacacacaca 994874  T

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Target: scaffold0830 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 5462 - 5379
Alignment:
Q  95 atcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattcttttatcaatttcctctttactatt 180  Q
    ||||||||||||||| ||  |||| |||||||||||| ||| | |||||||||||||||| ||||||||||||| |||||| ||||    
T  5462 atcaatagtgtttggaca--cacatacataaaaagatagtcttaaaaatattcaatcatttttttatcaatttcatctttattatt 5379  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 25955 - 26017
Alignment:
Q  189 tatttctttatgtgtgtgaccaaacactttttatttggtcacataaccatattagaatttctc 251  Q
    |||||||||||||||||| ||||||||||||  | ||||||  | ||||||||||||||||||    
T  25955 tatttctttatgtgtgtgcccaaacacttttcctatggtcatgtgaccatattagaatttctc 26017  T

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Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 25684 - 25773
Alignment:
Q  66 gaggtattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatcattctttt 159  Q
    |||||||||| | ||| |||  |||||||||||||| |||||||    |||||||| |||||||||  || | |||||||||||||||| ||||    
T  25684 gaggtattcttccatgatcacgagaccaaatcaataatgtttgg----acacacacgtaaaaagattttcatcaaaatattcaatcattttttt 25773  T

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Target: scaffold0288 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 18030 - 17974
Alignment:
Q  199 tgtgtgtgaccaaacacttttta-tttggtcacataaccatattagaatttctctta 254  Q
    ||||||||||||||||||||||  ||||||| | | |||||||||||||||||||||    
T  18030 tgtgtgtgaccaaacacttttttctttggtcccgtgaccatattagaatttctctta 17974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 35366 - 35464
Alignment:
Q  70 tattctcctatggtcataagaccaaatcaatagtgtttggtcatacacacacataaaaagatggtccttaaaatattcaatca--ttcttttatcaattt 167  Q
    |||||| | ||||||| ||||||||||||||| | ||||  |||||| |||  |||||||||  |||| ||||||||||||||  || ||||||||||||    
T  35366 tattcttccatggtcacaagaccaaatcaataatatttgaacatacataca--taaaaagattctcctcaaaatattcaatcatctttttttatcaattt 35463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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