View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_66 (Length: 371)
Name: NF1740_low_66
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_66 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 58 - 371
Target Start/End: Complemental strand, 3084112 - 3083805
Alignment:
| Q |
58 |
ataacataacatagcatgcatgtattattagtattaattatatcattcttctagaagctcagcaatttgtaatcttnnnnnnnnnnnnnnnnggaccaca |
157 |
Q |
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| T |
3084112 |
ataacataacatagcatgcatgtattattagtattaattatatcattattctagaagctcagcaatttgtaatcttaaaaaaatataaaaaaggaccaca |
3084013 |
T |
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| Q |
158 |
atgttcttccatagggtgacaacaacaagtgctatgtaacatatgtttgcacagctcgatgagcatataaattatcagttgatacatcaattttttaggc |
257 |
Q |
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| T |
3084012 |
atgttcttccatagggtgacaacagcaagtgctatgtaacatatgtttgcacagctcgatgagcatataaattatcagttgatacatcaattttttggtc |
3083913 |
T |
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| Q |
258 |
atgtctctctttatttgtgtaacaacctgttttctacactacatttgggattgggagattcctcctccaatctaatcggtgatttgtctcataatataat |
357 |
Q |
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| T |
3083912 |
atgtctctctttatttgtgtaacaacctgttttatacactacattt------gggagattcctcctccaatctaatcggtgatttgtctcataatataat |
3083819 |
T |
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| Q |
358 |
aatgatcaaggaat |
371 |
Q |
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| T |
3083818 |
aatgatgaaggaat |
3083805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 158 - 294
Target Start/End: Original strand, 3319398 - 3319535
Alignment:
| Q |
158 |
atgttcttccatagggtgacaacaacaagtgctatgtaacatat-gtttgcacagctcgatgagca-tataaattatcagttgatacatcaattttttag |
255 |
Q |
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| T |
3319398 |
atgttcttccatggggtgacaacaacaagtgctatgtaagatatacattgcacagctggataagcattgttaattatatgtcggtacattaattttttag |
3319497 |
T |
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| Q |
256 |
gcatgtctctctttatttgtgtaacaacctgttttctac |
294 |
Q |
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| T |
3319498 |
tcatg-ctctctttatttgtgaaacaacctgctttctac |
3319535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 3076359 - 3076309
Alignment:
| Q |
257 |
catgtctctctttatttgtgtaacaacctgttttctacactacatttggga |
307 |
Q |
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| T |
3076359 |
catgtctctctttatttgtgtaacaacctgttttctacactacattaggga |
3076309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 3084193 - 3084157
Alignment:
| Q |
14 |
taatactcgtgcaagcacatgctcatttcaactagtg |
50 |
Q |
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| T |
3084193 |
taatactcgtgcaagcacatgctcatttcaactagtg |
3084157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 3076448 - 3076397
Alignment:
| Q |
150 |
ggaccacaatgttcttccatagggtgacaacaacaagtgctatgtaacatat |
201 |
Q |
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| T |
3076448 |
ggaccaccatgttcttccatggggtgacaataacaagtgctatgtaagatat |
3076397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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