View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_67 (Length: 370)
Name: NF1740_low_67
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_67 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 20 - 370
Target Start/End: Complemental strand, 49677355 - 49677009
Alignment:
| Q |
20 |
aaaaataatgctcaaatctcttttgttgaatatgcaaatgtgaacaccttcacataaaatatggtgcccactgtacattatttgaattgatatgcattta |
119 |
Q |
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| T |
49677355 |
aaaagtaatgctcaaatctcttttgttgaat--gcatatgtgaacac-ttcacataaaatatggtgtccactgtacaacatttgaattgatatgcattta |
49677259 |
T |
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| Q |
120 |
ggcattcaattggcttaacaaaataagactcatatcagaattgaaactatcaaaccagttgattaaagtatctccaaaatcatctacgtcatatttcaaa |
219 |
Q |
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| T |
49677258 |
gacattcaattggcttaacaaaataagactcat--cagaattgaaactatcaaacctgttgattaaagtatctccaaaatcatctacgtcatatttcaaa |
49677161 |
T |
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| Q |
220 |
aatcaaaatatgtcaataaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttc |
319 |
Q |
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| T |
49677160 |
aatcaaaatatgttaatgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttc |
49677061 |
T |
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| Q |
320 |
catagaagaaaagaatcgatg-acgnnnnnnntgataacaagttacaacaac |
370 |
Q |
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| T |
49677060 |
catagaagaaaagaatcgatgaacgaaaaaaatgataacaagttacaacaac |
49677009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 238 - 322
Target Start/End: Original strand, 38303293 - 38303377
Alignment:
| Q |
238 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccat |
322 |
Q |
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| T |
38303293 |
aaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccat |
38303377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 34794956 - 34795059
Alignment:
| Q |
238 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaagaatcg |
337 |
Q |
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| T |
34794956 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttggctgttgtccaatgcttctatggaggaaaagcatgg |
34795055 |
T |
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| Q |
338 |
atga |
341 |
Q |
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|||| |
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| T |
34795056 |
atga |
34795059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 325
Target Start/End: Complemental strand, 16911473 - 16911382
Alignment:
| Q |
234 |
aataaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccataga |
325 |
Q |
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| T |
16911473 |
aataaaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgataga |
16911382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 30332411 - 30332460
Alignment:
| Q |
101 |
ttgaattgatatgcatttaggcattcaattggcttaacaaaataagactc |
150 |
Q |
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| T |
30332411 |
ttgaattgatatgcatttagacattcagttggcttaacaaattaagactc |
30332460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 238 - 341
Target Start/End: Original strand, 30332717 - 30332820
Alignment:
| Q |
238 |
aaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacccaatgatttaactattgtctaatgcttccatagaagaaaagaatcg |
337 |
Q |
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| T |
30332717 |
aaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatgcttccatggaggaaaagcatcg |
30332816 |
T |
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| Q |
338 |
atga |
341 |
Q |
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|||| |
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| T |
30332817 |
atga |
30332820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 12140375 - 12140322
Alignment:
| Q |
101 |
ttgaattgatatgcatttaggcattcaattggcttaacaaaataagactcatat |
154 |
Q |
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| T |
12140375 |
ttgaattgatatgcatttaagcatttagttgacttaacaaaataatactcatat |
12140322 |
T |
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