View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_68 (Length: 369)
Name: NF1740_low_68
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_68 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 32670329 - 32670687
Alignment:
| Q |
17 |
acaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgatctatatgaagaaagt |
116 |
Q |
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| T |
32670329 |
acaatcacctaaatatgttgatcagatgttgttaagtgcttctttctttgatattgattcatcatcacatttgcttggtgatgatctatatgaagaaagt |
32670428 |
T |
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| Q |
117 |
gatattcctttgtggaacttcagctgaagaaacgatcaaatactc--nnnnnnnnnnnnnnnnnnnnacaaaattcaattcaattttaattcttttgtct |
214 |
Q |
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| T |
32670429 |
gatattcctttgtggaacttcagctgaagaaacgatcaaatactcttttctttttcttttcttttttacaaaattcaattcaattttaattcttttgtct |
32670528 |
T |
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| Q |
215 |
tcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatggtacatattacaatatatagtctgagttcaaatttgtatatc----n |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32670529 |
tcagtgatactacttgaagatattagtgtaagaaataaatctaggctctaatgccacatattacaatatatagtctgagttcaaatttgtatatcttttt |
32670628 |
T |
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| Q |
311 |
nnnnnngatacatattgtgaatgttgggggaaattcatattaattacggacatgtgaat |
369 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32670629 |
tttatacatacatatagtgaatgttgggggaaattcatattaattacggacatgtgaat |
32670687 |
T |
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