View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_69 (Length: 368)
Name: NF1740_low_69
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 48019584 - 48019924
Alignment:
| Q |
9 |
agcacagagagggctgaaaaacctgcaatatgaataaatacattaaatataatttagtatttgagttattctactaccaaaactagaactgatttcatca |
108 |
Q |
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| T |
48019584 |
agcactgagagggctgaaaaacctgcaatatgaataaatacattaaatataatttagtatttgagttattctactaccaaaactagaactgatttcatca |
48019683 |
T |
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| Q |
109 |
aagaagctaaatgcattaaaagacactatgaaatttcatatgcatattctaccttccaaaaattccccagaatccaaaaaatccaatcattccttgaaca |
208 |
Q |
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| T |
48019684 |
aagaagctaaatgcattaaaagacactatgaaatttcatatgcatattctaccttccaaaaattccccagaatccaaaaaatccaatcattccttgaaca |
48019783 |
T |
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| Q |
209 |
aaagaagcaataagcaatgccccttgaatagctctcatggattgcttaaacctctgaaaaatgaaaccaagaacaaattaacactattctccaagctaat |
308 |
Q |
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| T |
48019784 |
aaagaagcaataagcaatgccccttgaatagctctcatggattgcttaaacctctgaaaaatgaaaccaagaacaaattaacactattctccaagctaat |
48019883 |
T |
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| Q |
309 |
gaaaactagaacagcatggttacacagacagacctgacgag |
349 |
Q |
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| T |
48019884 |
gaaaactagaacagcatggttacacagacagacctgacgag |
48019924 |
T |
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