View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_71 (Length: 367)
Name: NF1740_low_71
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 152 - 351
Target Start/End: Original strand, 42307747 - 42307946
Alignment:
| Q |
152 |
cagtaaatttgctccaaaccaaccccatcggccatctctacacctcatctgcgccaatccaccactgtgtttttctcttgccatcttcatgaggagctgt |
251 |
Q |
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| T |
42307747 |
cagtaaatttgctccaaaccaaccccatcggccatctctacacctcatctgcgccaatccaccattgtgtttttctcttaccatcttcatgaggagctgt |
42307846 |
T |
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| Q |
252 |
tgagagtgatgcccaattggccatgaaatatatccaaccaatttgcgctcaaattttccatgaatgcaaaaccgactccttttgtttgacacatgcattt |
351 |
Q |
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| T |
42307847 |
tgagagtgatgcccaattggccatgaaatatatccaaccaatttgcgctcaaattttccatgaatgcaaaacagactccttttgtttgacacatgcattt |
42307946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 42307508 - 42307655
Alignment:
| Q |
8 |
cgaagaaaatagcacacaccataagcaatacaaaagcactagtctacaaagccaatagggtggcatttaacatggggcagtaaaattttatcccaccatg |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307508 |
cgaaaaaaatagcacacaccataagcaatacaaaagcattagtctacaaagccaatagggtggcatttaacatggggcagtaaaattttatcccaccatg |
42307607 |
T |
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| Q |
108 |
gaaaagtggatccattatgggcaggtggcagttttaacttgctgcagt |
155 |
Q |
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| T |
42307608 |
gaaaagtggatccattatgggcaggtggcagttttaacttgctgcagt |
42307655 |
T |
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