View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_72 (Length: 364)
Name: NF1740_low_72
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_72 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 31741865 - 31742214
Alignment:
| Q |
1 |
ttggatttcagtttgcattttgccaatgtttcggttgggacaccacctttatggtttttggtggcattggataccggcagtgacttgttttggttacctt |
100 |
Q |
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| T |
31741865 |
ttggatttcagtttgcattttgccaatgtttcggttgggacaccacctctatggtttttggtggcattggataccggcagtgacttgttttggttacctt |
31741964 |
T |
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| Q |
101 |
gtaattgtaccagttgcgtgcgcggtttaaagacacaaaatggaaaggtttgtactctgcactgtcttttttctggttaagattcatactcaattatagt |
200 |
Q |
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| T |
31741965 |
gtaattgtaccagttgcgtgcgcggtttaaagacacaaaatggaaaggtttgtactctgcactgtctttttgctggttaagattcatactcaattatagt |
31742064 |
T |
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| Q |
201 |
aatcctttatcagtatatttctgttagtatatgtttggattgccggtgaatcactcattatcacttctcaatgcatgtgtgttgtgatttagttgaagct |
300 |
Q |
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| T |
31742065 |
aaccctttatcagtatatttctgttagtatatgtttggatttccggtgaatcactcattatcacttctcaatgcatgtgtgttgtgatttagttgaagct |
31742164 |
T |
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| Q |
301 |
tccaagtgtaactaactatcgtgatttcgaactgtgattctgtcaaattctctg |
354 |
Q |
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| T |
31742165 |
tcaaagtg----taactatcgtgatttcgaactgtgattctgtcaaattctctg |
31742214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 9064197 - 9064090
Alignment:
| Q |
5 |
atttcagtttgcattttgccaatgtttcggttgggacaccacctttatggtttttggtggcattggataccggcagtgacttgttttggttaccttgtaa |
104 |
Q |
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| T |
9064197 |
atttcagtttgcattttgcaaatgtttctgttgggacaccagcttcatcatatcttgttgcattagatactgggagtgacttattctggctcccttgcaa |
9064098 |
T |
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| Q |
105 |
ttgtacca |
112 |
Q |
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|||||||| |
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| T |
9064097 |
ttgtacca |
9064090 |
T |
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