View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_73 (Length: 362)
Name: NF1740_low_73
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_73 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 174 - 358
Target Start/End: Original strand, 5366237 - 5366421
Alignment:
| Q |
174 |
caataatttccgacaatctgcgaaagcaatttctaattggagaaaagttagaatagtattaagtgcacttgctcgcttcaaatactatgcttctcttcga |
273 |
Q |
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| T |
5366237 |
caataattttcgacaatctgcgaaagcaatttctaattggagaaaagttagaatagtatttagtgcacttgctcgcttcaaatactatgcatctcttcga |
5366336 |
T |
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| Q |
274 |
aacgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatccctatgcttctc |
358 |
Q |
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| T |
5366337 |
aacgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatctctatgcttctc |
5366421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 5366082 - 5366168
Alignment:
| Q |
19 |
tgaacttggtgactcggttgagaaagttacgttatcttgattttcctgctcccttcggtttctttctttctttctttgttgaattga |
105 |
Q |
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| T |
5366082 |
tgaacttggtgactcggttgagaaagttacgttatcttgattttcctgctcccttcggtttctttctttctttctttgttgaattga |
5366168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 358
Target Start/End: Original strand, 5422030 - 5422118
Alignment:
| Q |
270 |
tcgaaacgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatccctatgcttctc |
358 |
Q |
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| T |
5422030 |
tcgaaacgaaacaaggatccatgatgtgttcttaagttttagaggagaggatactcgtgcatcattcacttcacatctctatgcttctc |
5422118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 5108051 - 5107969
Alignment:
| Q |
276 |
cgacacatggatgcatgatgtgttcctaagttttagtggaaaggagacgcgtgcatctttcacttcgcatccctatgcttctc |
358 |
Q |
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| T |
5108051 |
cgacacaaggatccatgacgtgttcctaagtttcagaggcaaagatactcgtgcttccttcacttcacatctctatgcttctc |
5107969 |
T |
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