View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_76 (Length: 350)
Name: NF1740_low_76
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_76 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 52077142 - 52076837
Alignment:
| Q |
1 |
gagtgatgcatccattgttcttgtgtatcacgaggtataacaacaataatttgaatagcaacaataatacatgttagttgagatgcaaatctcttcccta |
100 |
Q |
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| T |
52077142 |
gagtgatgcatccattgttcttgtgtatcacgaggtagaacagcaacaatttgaatagcaacaataatacatgttagtggagatgcaaatctcttcccta |
52077043 |
T |
|
| Q |
101 |
ttgttgttaatgttttgatgggttgaatctgaattgtaggttgttgttgttggtagggatgacgaacaatggattctgatggagaataattaatggtatt |
200 |
Q |
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| T |
52077042 |
ttgttgttaatgttttgatgggttgaatctggattttaggttgttgttgttggtagggatgaggaacaatggattctgatggagaataattaatggtgtt |
52076943 |
T |
|
| Q |
201 |
gttcataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaattgttctagtgatgtttatagatgaaaatttgagatttaagtga |
300 |
Q |
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| T |
52076942 |
gttcataaaatggttttgaatttatgttagatatgcaatttcgaatggatcaacaattgttctagtgatgtttatagatgaaaatttgagatttaagtga |
52076843 |
T |
|
| Q |
301 |
agtatt |
306 |
Q |
| |
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|||||| |
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| T |
52076842 |
agtatt |
52076837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 3615864 - 3615567
Alignment:
| Q |
14 |
attgttcttgtgtatcacgaggtataacaacaataatttgaatagcaacaataatacatgttagttgagatgcaaatctcttccctattgttgttaatgt |
113 |
Q |
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| T |
3615864 |
attgttcttgtgtatcacgatgtataacagcaacaatttgaatagcaacaataatacatgtg----gagatgcaaatctcttccctattgttgttaatgt |
3615769 |
T |
|
| Q |
114 |
t---------ttgatgggttgaatctgaattgtaggttgttgttgttggtagggatgacgaacaatggattctgatggagaataattaatggtattgttc |
204 |
Q |
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| T |
3615768 |
tgttaatgttttgatgggttgaatctgaattttaggttgttgttgttggtagggatgagaaacaatgggttctgatggagaataattaatggtgttgttc |
3615669 |
T |
|
| Q |
205 |
ataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaattgttctagtgatgtttatagatgaaaatttgagatttaagtgaagta |
304 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3615668 |
ataaaatggttttgaatttttgttagatatgcaatttcgaatggatctgcagttgttctagtgatgtttatagatgaaaatttgagatttaagcgaagta |
3615569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 16756996 - 16757298
Alignment:
| Q |
1 |
gagtgatgcatccattgttcttgtgtatcacgaggtataacaacaataatttgaatagcaacaataatacatgttagttgagatgcaaatctcttcccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||| ||||||||||| || |
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| T |
16756996 |
gagtgatgcatccattgttcttgtgtatcacgaggtataacagcaaaactttgaatagcaacaataatacatgttagtggagatgtaaatctcttcctta |
16757095 |
T |
|
| Q |
101 |
ttgttgttaatgttttgatgggttgaatctgaattgtaggttgttgttgttggtagggatgacgaacaatggattctgatggagaataattaatggtatt |
200 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||| ||||||||| || ||||||||||||||||||||| || |
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| T |
16757096 |
ttgttgttaatgttttgatgggttgaatctggattttaggtggttg---ttggtagggatgaggaacaatgggttttgatggagaataattaatggtgtt |
16757192 |
T |
|
| Q |
201 |
gttcataaaatggttttgaatttatgttagatatgcaattttgaatggatcaacaattgttctagtgatgtttatagatgaaaatttgagatttaagtga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16757193 |
gttcataaaatggttttgaatttatgttagatatgcaatttcgaatggatctgcaattgttctagtgatgtttatagatgaaaatttgagatttaagtga |
16757292 |
T |
|
| Q |
301 |
agtatt |
306 |
Q |
| |
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|||||| |
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|
| T |
16757293 |
agtatt |
16757298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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