View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_77 (Length: 348)
Name: NF1740_low_77
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_77 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 2719744 - 2719426
Alignment:
| Q |
20 |
tatgatgagagggttttatttgtggtgacagtgaggccactagaggccgatttgcgaccacaaagaatggtggtagctagggtttgcaaagagaaaacag |
119 |
Q |
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| T |
2719744 |
tatgatgagagggttttatttgtggtgacagtgaggccactcgaggccgatttgcgaccacaaagaatggtggtagctaaggtttgcaaagagaaaagag |
2719645 |
T |
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| Q |
120 |
agagacaaaaaggtgattttattgattcatttacaaagagaaaatgcccttccagattatttcttctcatcccctaatat-----annnnnnnnnactaa |
214 |
Q |
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| T |
2719644 |
agagacaaaaaggtgattttattgattcatttacaaacagaaaatgccctttcagattatttcttctcatcccataatatttttattttttttttactaa |
2719545 |
T |
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| Q |
215 |
atgacactcacaaagaaaaggcccactatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtagaga |
314 |
Q |
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||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2719544 |
atggcactcacaaagaaaaggcccaccatcaagattaatctaaacaattttttatgttgttttgaaatgaccaaggtgagggtttgtatatatgtagaga |
2719445 |
T |
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| Q |
315 |
aaataaaagagatggttag |
333 |
Q |
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||||||||||||||||||| |
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| T |
2719444 |
aaataaaagagatggttag |
2719426 |
T |
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