View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_79 (Length: 346)

Name: NF1740_low_79
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_79
NF1740_low_79
[»] chr1 (13 HSPs)
chr1 (14-158)||(30529567-30529711)
chr1 (256-346)||(30529384-30529474)
chr1 (243-343)||(46729205-46729305)
chr1 (261-346)||(35508420-35508506)
chr1 (266-343)||(14758592-14758669)
chr1 (267-343)||(44920251-44920327)
chr1 (289-346)||(18032219-18032276)
chr1 (285-346)||(26533731-26533792)
chr1 (279-343)||(41649919-41649983)
chr1 (267-346)||(51681670-51681747)
chr1 (266-337)||(36564489-36564560)
chr1 (277-343)||(13792004-13792070)
chr1 (266-330)||(19547045-19547109)
[»] chr8 (8 HSPs)
chr8 (243-342)||(14237162-14237261)
chr8 (267-343)||(20142436-20142512)
chr8 (267-346)||(33285922-33286001)
chr8 (266-343)||(43238137-43238214)
chr8 (266-346)||(14855580-14855660)
chr8 (266-346)||(6904198-6904278)
chr8 (268-346)||(40464406-40464484)
chr8 (267-346)||(10565375-10565454)
[»] chr2 (5 HSPs)
chr2 (255-346)||(32438067-32438158)
chr2 (266-343)||(33962939-33963016)
chr2 (274-330)||(37597534-37597590)
chr2 (269-343)||(18734385-18734459)
chr2 (265-336)||(7933334-7933405)
[»] chr7 (6 HSPs)
chr7 (267-343)||(44319852-44319928)
chr7 (243-342)||(26235-26334)
chr7 (266-329)||(6771884-6771947)
chr7 (266-306)||(31902745-31902785)
chr7 (276-326)||(6775281-6775331)
chr7 (281-346)||(41898284-41898349)
[»] chr4 (10 HSPs)
chr4 (260-346)||(38380488-38380574)
chr4 (266-343)||(38949055-38949132)
chr4 (274-329)||(34469571-34469626)
chr4 (270-343)||(32893044-32893117)
chr4 (267-327)||(7388824-7388884)
chr4 (267-343)||(49011880-49011956)
chr4 (266-343)||(55855181-55855255)
chr4 (299-343)||(31655536-31655580)
chr4 (290-343)||(23133068-23133121)
chr4 (274-346)||(39804890-39804963)
[»] chr5 (6 HSPs)
chr5 (266-343)||(248457-248534)
chr5 (245-343)||(20125629-20125727)
chr5 (266-343)||(42877277-42877354)
chr5 (266-346)||(16980768-16980848)
chr5 (242-346)||(40944239-40944343)
chr5 (242-296)||(29558281-29558335)
[»] scaffold0027 (1 HSPs)
scaffold0027 (242-346)||(122437-122541)
[»] chr3 (8 HSPs)
chr3 (267-343)||(3973846-3973922)
chr3 (267-343)||(3995955-3996031)
chr3 (242-343)||(49682200-49682301)
chr3 (267-343)||(4009483-4009559)
chr3 (266-346)||(21813152-21813232)
chr3 (273-346)||(32606385-32606458)
chr3 (266-343)||(39145001-39145077)
chr3 (266-346)||(29212730-29212810)
[»] chr6 (1 HSPs)
chr6 (266-329)||(29988325-29988388)
[»] scaffold0633 (1 HSPs)
scaffold0633 (279-343)||(5013-5077)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 30529711 - 30529567
Alignment:
Q  14 aaatataacaacctcattcttgannnnnnncccaaaattcttttagaaagccaaaattaacttcatcggacctaaaattcttaaatctatcacaatccta 113  Q
    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  30529711 aaatataacaacctcattcttgatttctt-cccaaaattcttttagaaagccaaaattaacttcatcggacctaaagttcttaaatctgtcacaatccta 30529613  T
Q  114 -nnnnnnnncttcaaacttttgctaatttctataatagaattggct 158  Q
             ||||||||||||||||||||| |||||||||||||||    
T  30529612 tttttttttcttcaaacttttgctaatttcaataatagaattggct 30529567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 256 - 346
Target Start/End: Complemental strand, 30529474 - 30529384
Alignment:
Q  256 ttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||| |||||| ||||||||    
T  30529474 ttaagacattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcagaaattgaagtgttaaattttttcaa 30529384  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 243 - 343
Target Start/End: Complemental strand, 46729305 - 46729205
Alignment:
Q  243 ttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttt 342  Q
    ||||||| || ||| ||||||  |||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||| |||||| ||||| |||||    
T  46729305 ttaacgagtgccctaaaggcactctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatgcatcggaatttgaagtgttaatctttt 46729206  T
Q  343 t 343  Q
    |    
T  46729205 t 46729205  T

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Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 35508506 - 35508420
Alignment:
Q  261 gcatactttaaggactttaaataataaatttttatgggaaattgtgcattt-aatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||| |||||| |||||||||||||||||||||||| |||||||| ||||| ||| ||| ||||||||||| |||||| ||||||||    
T  35508506 gcattctttaaagactttaaataataaatttttatgagaaattgtacatttaaatgcattggaaattgaagtgttaaattttttcaa 35508420  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 14758669 - 14758592
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||||||| ||||||||||||  |||||||||||| ||| ||||| ||||||||  ||||||||||||    
T  14758669 ctttaaggactttaaatagtaaatttttatgaaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 14758592  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 44920327 - 44920251
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||| ||| ||||  ||||||||| ||||||||||||    
T  44920327 tttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatgcatcataaattgaagtgttaaacttttt 44920251  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 18032276 - 18032219
Alignment:
Q  289 tttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||| || || |||||||||| |||||||||||||||  ||||||||||||||    
T  18032276 tttttatggaaacttatgcatttaatgcatcggaaattgaagcattaaactttttcaa 18032219  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 26533731 - 26533792
Alignment:
Q  285 taaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||||||| || |||||||||||| ||| |||||||||||  |||| ||||||||||    
T  26533731 taaatttttatggaaacttgtgcatttaaaacagcggaaattgaaacgttagactttttcaa 26533792  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 41649983 - 41649919
Alignment:
Q  279 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||| ||||||||||||| ||||| |||||| ||| ||| ||||||||||  ||||||||||||    
T  41649983 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttt 41649919  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 51681747 - 51681670
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||| ||| ||||||||||||||  |||| ||||||| |||| ||| || |||||||| ||| |||||||||||||||    
T  51681747 tttaagaactctaaataataaattt--atggaaaattgtacattcaatgcaccggaaattaaagtgttaaactttttcaa 51681670  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 337
Target Start/End: Original strand, 36564489 - 36564560
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaa 337  Q
    |||||||||||||||||| |||| |||||||  |||||||||||| ||| | |  |||||||||| ||||||    
T  36564489 ctttaaggactttaaatagtaaaattttatgaaaaattgtgcattcaatgctttagaaattgaagtgttaaa 36564560  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 343
Target Start/End: Original strand, 13792004 - 13792070
Alignment:
Q  277 ttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||| |||||||||||  ||||||||||||| ||| ||||   |||||||| ||||||||||||    
T  13792004 ttaaatagtaaatttttataagaaattgtgcattaaatgcatcaataattgaagtgttaaacttttt 13792070  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Original strand, 19547045 - 19547109
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaag 330  Q
    |||||||||||||| ||| ||| ||||||| | || ||||||||| ||| |||||| ||||||||    
T  19547045 ctttaaggactttatatagtaagtttttatagaaacttgtgcattcaatgcatcgggaattgaag 19547109  T

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Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 14237261 - 14237162
Alignment:
Q  243 ttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttt 342  Q
    ||||||| || |||||  |||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  14237261 ttaacgagtgcccttagagcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaactttt 14237162  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 20142436 - 20142512
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||    
T  20142436 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaacttttt 20142512  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 346
Target Start/End: Original strand, 33285922 - 33286001
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||||||||||| ||||||||||||  |||||||| ||||||||||||| ||||||||  |||||| ||||||||    
T  33285922 tttaaggactttaaatagtaaatttttatgaaaaattgtgtatttaatacatcgaaaattgaaatgttaaattttttcaa 33286001  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 43238137 - 43238214
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||| |||||||||| ||||||||||||| ||||| | |||||||| ||||| ||||||||| ||||||||||||    
T  43238137 ctttaagaactttaaatagtaaatttttatggaaaattctacatttaatgcatcgaaaattgaagtgttaaacttttt 43238214  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 14855580 - 14855660
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||| ||||||||||||||||||||||||  ||| ||| ||||| || ||||| ||||||||| |||||||||||||||    
T  14855580 ctttaaagactttaaataataaatttttatgaaaaagtgtccatttgatgcatcgtaaattgaagtgttaaactttttcaa 14855660  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 6904278 - 6904198
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||| ||||||| ||| ||| ||||||||| || |||||| || ||| |||||||||||||||  ||||||||||||||    
T  6904278 ctttaaagactttagatagtaattttttatggaaacttgtgcgttcaatgcatcggaaattgaagcattaaactttttcaa 6904198  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Original strand, 40464406 - 40464484
Alignment:
Q  268 ttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||||| |||| ||||||||||||| || ||||||||| || |||||| ||||||||   |||||| |||||||    
T  40464406 ttaaggactttgaatagtaaatttttatggtaacttgtgcattcaaaacatcgaaaattgaaatattaaacattttcaa 40464484  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 10565454 - 10565375
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||| ||||||| ||| ||||||||||||| || ||||||||| ||||||||  ||||| |||  ||| ||||||||||    
T  10565454 tttaaagactttagatagtaaatttttatggaaatttgtgcattcaatacatcaaaaattaaagtattagactttttcaa 10565375  T

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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 32438067 - 32438158
Alignment:
Q  255 cttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  32438067 cttaatgcattctttaaggactttaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagtgttaaaccttttcaa 32438158  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 33962939 - 33963016
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||||||||||||||||||||  |||||||||||| ||| ||| | ||||||||| ||||||||||||    
T  33962939 ctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattgaagtgttaaacttttt 33963016  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 274 - 330
Target Start/End: Complemental strand, 37597590 - 37597534
Alignment:
Q  274 actttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaag 330  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  37597590 actttaaataataaaattttatgggaaattgtgcatttaatgcattggaaattgaag 37597534  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 343
Target Start/End: Complemental strand, 18734459 - 18734385
Alignment:
Q  269 taaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||| ||||| ||||||||||||  |||||||||||| |||  |||||||||||||| ||||||||||||    
T  18734459 taaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgtatcggaaattgaagtgttaaacttttt 18734385  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Complemental strand, 7933405 - 7933334
Alignment:
Q  265 actttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaa 336  Q
    |||||||| |||||||||| ||||||||||||  ||||| |||||| ||| ||||||||||||||| |||||    
T  7933405 actttaagtactttaaatagtaaatttttatgaaaaattatgcattcaatgcatcggaaattgaagtgttaa 7933334  T

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Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 44319852 - 44319928
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||    
T  44319852 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatgcatcgaaaattaaagtgttaaacttttt 44319928  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 26334 - 26235
Alignment:
Q  243 ttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttt 342  Q
    ||||||| |||||||| | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| ||| |||||||||||    
T  26334 ttaacgagtgtccttaggacattctttaagaactttaaataataaatttttatgggaaattgtacatttaatgcatcgaaaattaaagtgttaaactttt 26235  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 6771947 - 6771884
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaa 329  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||||||||    
T  6771947 ctttaaggactttaaatagtaaatttttatggaaaattgtgcattcaatatatcggaaattgaa 6771884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 31902745 - 31902785
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtg 306  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  31902745 ctttaaggactttaaatagtaaatttttatggaaaattgtg 31902785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 6775331 - 6775281
Alignment:
Q  276 tttaaataataaatttttatgggaaattgtgcatttaatacatcggaaatt 326  Q
    |||||||| ||||| ||||||| |||||||||||| ||| |||||||||||    
T  6775331 tttaaatagtaaatatttatggaaaattgtgcattcaatgcatcggaaatt 6775281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 41898349 - 41898284
Alignment:
Q  281 ataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||||||| |||||| || |||| |||||||| ||||||||||||||   || |||||||||||    
T  41898349 ataataaattgttatggaaacttgtacatttaatgcatcggaaattgaattattgaactttttcaa 41898284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 260 - 346
Target Start/End: Complemental strand, 38380574 - 38380488
Alignment:
Q  260 ggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||| | ||||||||||||| |||||||||||||||    
T  38380574 ggcattctttaaggactttaaatagtaaatttttatggaaaattatgcatttaatgcttcggaaattgaagtgttaaactttttcaa 38380488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 38949055 - 38949132
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||| ||||| ||||||||||||  |||||||||||| ||| ||||||||||||||| |||||| |||||    
T  38949055 ctttaaggacttgaaatagtaaatttttatgaaaaattgtgcattcaatgcatcggaaattgaagtgttaaatttttt 38949132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 274 - 329
Target Start/End: Original strand, 34469571 - 34469626
Alignment:
Q  274 actttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaa 329  Q
    |||||||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  34469571 actttaaataataaatttttatgaaaaattgtgcatttaatgcatcggaaattgaa 34469626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 343
Target Start/End: Complemental strand, 32893117 - 32893044
Alignment:
Q  270 aaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||| |||| |||||| | |||||||||||| ||| ||||| ||||||||  ||||||||||||    
T  32893117 aaggactttaaatagtaaacttttatagaaaattgtgcattcaatgcatcgaaaattgaaatgttaaacttttt 32893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 7388884 - 7388824
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattg 327  Q
    |||||| |||||| ||| ||||||||||||| || ||||||||||||| ||||||||||||    
T  7388884 tttaagaactttagatagtaaatttttatggaaacttgtgcatttaatgcatcggaaattg 7388824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 49011880 - 49011956
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||||||||||| ||| ||||| ||  || ||||||||||||| ||||| |||||||||  |||||||||||    
T  49011880 tttaaggactttaaatagtaagtttttgtgaaaacttgtgcatttaatgcatcgaaaattgaagtattaaacttttt 49011956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 55855255 - 55855181
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||||||||||||||||||||||  |||| ||| |||||||   ||| ||||||||| ||||||||||||    
T  55855255 ctttaaggactttaaataataaatttttatgaaaaatcgtg-atttaat--gtcgaaaattgaagtgttaaacttttt 55855181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 343
Target Start/End: Complemental strand, 31655580 - 31655536
Alignment:
Q  299 aaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||    
T  31655580 aaattgtgcattcaatacatcggatattgaagtgttaaacttttt 31655536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 343
Target Start/End: Original strand, 23133068 - 23133121
Alignment:
Q  290 ttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||| | |||||||| ||| ||| ||||||||||||||| ||||||||||||    
T  23133068 ttttatagaaaattgtgtattcaatgcatcggaaattgaagtgttaaacttttt 23133121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 346
Target Start/End: Original strand, 39804890 - 39804963
Alignment:
Q  274 actttaaataataaattttt-atgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||||||| ||||||||| |||  ||||||||||||||||  |||  ||||||||| |||||| ||||||||    
T  39804890 actttaaatagtaaattttttatgaaaaattgtgcatttaatgtatcaaaaattgaagtgttaaattttttcaa 39804963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 248457 - 248534
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||    
T  248457 ctttaaggacttgaaatagtaaatttttatggaaaattgtgcattcaatacatcggaaattgaagtgttaaacttttt 248534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 20125629 - 20125727
Alignment:
Q  245 aacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||| || |||||||| ||  ||||||||||||||||| ||||||||||||  |||||||||||||| | ||||| ||||||||| ||||||||||||    
T  20125629 aacgagtgaccttaaggaattttttaaggactttaaatagtaaatttttatgaaaaattgtgcatttagtgcatcgaaaattgaagtgttaaacttttt 20125727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 42877354 - 42877277
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||| ||||||||||| ||||||||||||| |||||||| ||| ||||||| | ||||||||   |||||||||||    
T  42877354 ctttaaagactttaaatagtaaatttttatggaaaattgtgtattcaatacattgaaaattgaaattttaaacttttt 42877277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 16980848 - 16980768
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||| ||||||||||| || |||||||||  ||||| | |||| |||  |||||||||||||| |||||||||| ||||    
T  16980848 ctttaaagactttaaatagtacatttttatgaaaaattatacattcaatgtatcggaaattgaagtgttaaactttctcaa 16980768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 40944239 - 40944343
Alignment:
Q  242 gttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttt 341  Q
    |||||||| ||| |||| | || |||||||  |||||| ||| ||||||||||||| || |||| |||| ||| ||||| |||||||||  ||| |||||    
T  40944239 gttaacgagtgttcttatgacacactttaaatactttagatagtaaatttttatggaaatttgtacattcaatgcatcgaaaattgaagcattatacttt 40944338  T
Q  342 ttcaa 346  Q
    |||||    
T  40944339 ttcaa 40944343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 29558335 - 29558281
Alignment:
Q  242 gttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatg 296  Q
    |||||||||||  || ||| ||| ||||||||||||| |||||||||||||||||    
T  29558335 gttaacgaatgctctaaagacattctttaaggacttttaataataaatttttatg 29558281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 122437 - 122541
Alignment:
Q  242 gttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttt 341  Q
    |||||||| || | ||| ||||| ||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||||||||||| ||| ||||||||||    
T  122437 gttaacgagtgcctttagggcattctttaaggattttaagtagtaattttttatggaaaattgtgcatttaatgcatcggaaattaaagtgttaaacttt 122536  T
Q  342 ttcaa 346  Q
    |||||    
T  122537 ttcaa 122541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 3973922 - 3973846
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||    
T  3973922 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttt 3973846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 3995955 - 3996031
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||||    
T  3995955 tttaaggacttgaaatagtaaatttttatggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttt 3996031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 49682301 - 49682200
Alignment:
Q  242 gttaacgaatgtccttaaggcatactttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttt 341  Q
    ||||||||||||||| |  | ||  ||||||||||||||||| ||||||||||| | |||||||||||| ||| | ||||||||||||  ||||||||||    
T  49682301 gttaacgaatgtcctaagagtattttttaaggactttaaatagtaaatttttatagaaaattgtgcattcaatgcttcggaaattgaaatgttaaacttt 49682202  T
Q  342 tt 343  Q
    ||    
T  49682201 tt 49682200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 267 - 343
Target Start/End: Original strand, 4009483 - 4009559
Alignment:
Q  267 tttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||||||| | ||||| ||||||||| ||| |||||||||||||||| ||||||||||||||| ||| ||||||||    
T  4009483 tttaaggacatgaaatagtaaatttttgtggaaaattgtgcatttaatgcatcggaaattgaagcgttgaacttttt 4009559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 346
Target Start/End: Original strand, 21813152 - 21813232
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||| |||||||| ||||||||||||| ||||| |||||| ||| |||||||| || ||| |||||||||||||||    
T  21813152 ctttaaggattttaaatagtaaatttttatggaaaattatgcattcaatgcatcggaatttaaagtgttaaactttttcaa 21813232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 346
Target Start/End: Original strand, 32606385 - 32606458
Alignment:
Q  273 gactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    ||||||||||||||||||||||||  ||||| |||||| ||| ||||||||||||||  |||||  ||||||||    
T  32606385 gactttaaataataaatttttatgaaaaattatgcattcaatgcatcggaaattgaaatgttaacttttttcaa 32606458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 266 - 343
Target Start/End: Complemental strand, 39145077 - 39145001
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    |||||| |||||||||||||||||||| || | ||||| |||||| ||| ||||||||||||||| |||||| |||||    
T  39145077 ctttaaagactttaaataataaatttt-atagaaaattatgcattcaatgcatcggaaattgaagtgttaaaattttt 39145001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 29212810 - 29212730
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaactttttcaa 346  Q
    |||||| ||||||| ||| ||||||||||| | || ||||||||| ||||||||  |||||||||  ||| ||||||||||    
T  29212810 ctttaaagactttagatattaaatttttatagaaacttgtgcattcaatacatcataaattgaagcattagactttttcaa 29212730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 266 - 329
Target Start/End: Original strand, 29988325 - 29988388
Alignment:
Q  266 ctttaaggactttaaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaa 329  Q
    |||||||||||||||||| ||||||||||||| ||||||  |||| ||||||||  ||||||||    
T  29988325 ctttaaggactttaaatagtaaatttttatggaaaattgaacattcaatacatcaaaaattgaa 29988388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 5013 - 5077
Alignment:
Q  279 aaataataaatttttatgggaaattgtgcatttaatacatcggaaattgaagagttaaacttttt 343  Q
    ||||| ||||||||||||| ||||| |||||| ||| ||| ||||||||||  ||||||||||||    
T  5013 aaatagtaaatttttatggaaaattatgcattcaatgcatgggaaattgaaatgttaaacttttt 5077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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