View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_85 (Length: 341)
Name: NF1740_low_85
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 205 - 331
Target Start/End: Original strand, 2563119 - 2563245
Alignment:
| Q |
205 |
cacaatcgcttattagattaccttggcgagattaacgtaaaagaagaggggttttttggtgtttgagacttgaatacgattcttcttgatagaatcggtg |
304 |
Q |
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| T |
2563119 |
cacaatcgcttattagattaccttggcgagattaacgtaaaagaagaggggttttttggtgtttgagacttgaatacgattcttcttgatagaatcggtg |
2563218 |
T |
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| Q |
305 |
atgttgacgttgttaactccttctgtg |
331 |
Q |
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| T |
2563219 |
atgttgacgttgttaactccttctgtg |
2563245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 2562935 - 2562985
Alignment:
| Q |
18 |
cattcctagtgctgaaagctcaacctcattatgctgttgcatatacctctg |
68 |
Q |
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| T |
2562935 |
cattcctagtgctgaaagctcaacctcattatgctgttgcatatacctctg |
2562985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 44559779 - 44559710
Alignment:
| Q |
222 |
ttaccttggcgagattaacgtaaaagaagaggggttttttggtgtttgagacttgaatacgattcttctt |
291 |
Q |
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| T |
44559779 |
ttactttggcgagattaacgtagaagaagaggggttttttggtattagagacttgaatgcgattcttctt |
44559710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 35872358 - 35872409
Alignment:
| Q |
216 |
attagattaccttggcgagattaacgtaaaagaagaggggttttttggtgtt |
267 |
Q |
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| T |
35872358 |
attacattaccttggcgagattgacgtaaaagaaaagcggtttcttggtgtt |
35872409 |
T |
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