View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_87 (Length: 340)
Name: NF1740_low_87
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 179 - 323
Target Start/End: Original strand, 3076519 - 3076663
Alignment:
| Q |
179 |
taggtattccaaccataatttctttggaaacctcacaacaaatccatcatggcaaatgttggggtcaaaaaacatcactaatccacaagaacttgataaa |
278 |
Q |
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| T |
3076519 |
taggtattccaaccataatttctttgggaacctcacaacaaatccatcatggcaaatgttggggtcaaaaaacatcactaatccacaagaacttgataaa |
3076618 |
T |
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| Q |
279 |
ggtgaggataatatgcaaagtttaataagtgaagctactttggag |
323 |
Q |
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| T |
3076619 |
ggtgaggataatatgcaaagtttaataagtgaagctactttggag |
3076663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 174 - 323
Target Start/End: Original strand, 3086398 - 3086547
Alignment:
| Q |
174 |
ttgagtaggtattccaaccataatttctttggaaacctcacaacaaatccatcatggcaaatgttggggtcaaaaaacatcactaatccacaagaacttg |
273 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
3086398 |
ttgagcaggtattccaaccataatttttttggaaacctcacaacaagtccatcatggcaaaggccagggtcaaaaaacatcactaatccacaagaacttg |
3086497 |
T |
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| Q |
274 |
ataaaggtgaggataatatgcaaagtttaataagtgaagctactttggag |
323 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3086498 |
ataaagctgaggataatatgcaaagtttaataagtgaagctactttggag |
3086547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 175 - 323
Target Start/End: Complemental strand, 4552092 - 4551944
Alignment:
| Q |
175 |
tgagtaggtattccaaccataatttctttggaaacctcacaacaaatccatcatggcaaatgttggggtcaaaaaacatcactaatccacaagaacttga |
274 |
Q |
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| T |
4552092 |
tgagtagatattccaaccataatttttttgggaacctcacaacaagtccatcatggcaaaggttggggtcaaaaaacatcactgatccacaagaacttga |
4551993 |
T |
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| Q |
275 |
taaaggtgaggataatatgcaaagtttaataagtgaagctactttggag |
323 |
Q |
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| T |
4551992 |
taaagctgaggataatatgcaaagtttaataagcgaagctactttggag |
4551944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 3076422 - 3076488
Alignment:
| Q |
113 |
gagagagctagagatgaaaaaacttaaaattcatttttctgattaaaattttgttgtgttattgagta |
180 |
Q |
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| T |
3076422 |
gagagagttatagatgaaaac-cttaaaattcatttttcagattcaaattttgttgtgttatggagta |
3076488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 10511147 - 10511197
Alignment:
| Q |
3 |
tatactactataggactaaagctacttgtaagtaaactatatctctaataa |
53 |
Q |
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|||| |||||||| ||||| |||||||||| ||||||||||||||||||| |
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| T |
10511147 |
tatattactatagaactaatactacttgtaactaaactatatctctaataa |
10511197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 40131953 - 40131904
Alignment:
| Q |
3 |
tatactactataggactaaagctacttgtaagtaaactatatctctaata |
52 |
Q |
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||||||||||||||| ||| ||| ||||||| |||||||||| ||||||| |
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| T |
40131953 |
tatactactataggattaatgctgcttgtaactaaactatatttctaata |
40131904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 27750872 - 27750922
Alignment:
| Q |
3 |
tatactactataggactaaagctacttgtaagtaaactatatctctaataa |
53 |
Q |
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| T |
27750872 |
tatactactataggactaatactacttgtaagtaaactatatctctaataa |
27750922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 24249740 - 24249697
Alignment:
| Q |
3 |
tatactactataggactaaagctacttgtaagtaaactatatct |
46 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24249740 |
tatactactataggactaatgctacttgtaagtaaactatatct |
24249697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 29908147 - 29908193
Alignment:
| Q |
6 |
actactataggactaaagctacttgtaagtaaactatatctctaata |
52 |
Q |
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|||||||||||||||| |||||||||| ||| |||||||||||||| |
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| T |
29908147 |
actactataggactaatactacttgtaactaacctatatctctaata |
29908193 |
T |
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