View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_9 (Length: 686)

Name: NF1740_low_9
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_9
NF1740_low_9
[»] chr4 (26 HSPs)
chr4 (1-331)||(5280334-5280662)
chr4 (332-476)||(2323471-2323615)
chr4 (354-476)||(43285450-43285572)
chr4 (354-475)||(52463272-52463393)
chr4 (355-476)||(17544148-17544269)
chr4 (354-476)||(951650-951772)
chr4 (329-452)||(3409787-3409915)
chr4 (356-476)||(47295862-47295982)
chr4 (331-423)||(54134171-54134263)
chr4 (356-475)||(27870295-27870414)
chr4 (369-465)||(20034001-20034097)
chr4 (376-466)||(44341776-44341866)
chr4 (376-464)||(32768383-32768471)
chr4 (376-452)||(32594799-32594875)
chr4 (356-476)||(45522785-45522905)
chr4 (376-475)||(34858318-34858417)
chr4 (377-452)||(44857030-44857105)
chr4 (329-423)||(16030489-16030578)
chr4 (354-415)||(50005493-50005554)
chr4 (332-452)||(1324041-1324161)
chr4 (376-459)||(41361969-41362052)
chr4 (335-452)||(9454469-9454586)
chr4 (372-420)||(19244515-19244563)
chr4 (386-437)||(1704507-1704558)
chr4 (329-404)||(35393330-35393405)
chr4 (332-361)||(32768501-32768530)
[»] chr1 (26 HSPs)
chr1 (356-682)||(4221647-4221968)
chr1 (552-682)||(48384115-48384245)
chr1 (332-476)||(12749872-12750016)
chr1 (332-475)||(46158356-46158499)
chr1 (332-476)||(43780845-43780989)
chr1 (332-476)||(45756920-45757058)
chr1 (354-466)||(33189318-33189430)
chr1 (355-473)||(17332081-17332198)
chr1 (376-473)||(43263179-43263276)
chr1 (332-473)||(48469591-48469727)
chr1 (356-476)||(9660522-9660642)
chr1 (332-401)||(42763001-42763070)
chr1 (363-472)||(45566539-45566647)
chr1 (383-476)||(47188271-47188364)
chr1 (376-466)||(24682295-24682385)
chr1 (354-452)||(32058147-32058245)
chr1 (363-473)||(49228492-49228603)
chr1 (372-473)||(31488843-31488945)
chr1 (388-466)||(6502010-6502088)
chr1 (330-360)||(35984932-35984962)
chr1 (328-361)||(23973636-23973669)
chr1 (332-361)||(40411981-40412010)
chr1 (376-473)||(45040095-45040192)
chr1 (332-361)||(47188242-47188271)
chr1 (332-361)||(50511431-50511460)
chr1 (332-360)||(44922838-44922866)
[»] chr3 (20 HSPs)
chr3 (332-682)||(26843495-26843839)
chr3 (332-476)||(46219386-46219525)
chr3 (354-476)||(6884283-6884405)
chr3 (354-476)||(43745869-43745991)
chr3 (368-476)||(33986113-33986221)
chr3 (354-476)||(27877813-27877935)
chr3 (332-465)||(50737125-50737256)
chr3 (332-465)||(50775599-50775730)
chr3 (383-476)||(21075611-21075704)
chr3 (381-473)||(43736569-43736661)
chr3 (332-427)||(26319202-26319297)
chr3 (376-475)||(46312148-46312247)
chr3 (372-449)||(11486222-11486299)
chr3 (387-472)||(19976416-19976501)
chr3 (380-473)||(15326274-15326361)
chr3 (403-473)||(24311722-24311792)
chr3 (372-473)||(20511246-20511345)
chr3 (382-451)||(36638614-36638683)
chr3 (332-361)||(36638712-36638741)
chr3 (327-360)||(42480473-42480506)
[»] chr2 (18 HSPs)
chr2 (330-475)||(40860710-40860855)
chr2 (332-481)||(29205667-29205816)
chr2 (332-473)||(26555813-26555954)
chr2 (354-476)||(21104287-21104409)
chr2 (332-476)||(25096566-25096705)
chr2 (332-466)||(40000472-40000601)
chr2 (376-473)||(38837342-38837439)
chr2 (369-473)||(9471630-9471734)
chr2 (351-452)||(15560279-15560380)
chr2 (355-476)||(15613344-15613464)
chr2 (375-473)||(38571367-38571465)
chr2 (368-473)||(17921483-17921587)
chr2 (336-476)||(42730036-42730176)
chr2 (332-476)||(5271915-5272059)
chr2 (376-473)||(4469924-4470021)
chr2 (376-456)||(20921945-20922026)
chr2 (332-361)||(28223551-28223580)
chr2 (372-400)||(10822302-10822330)
[»] chr7 (18 HSPs)
chr7 (332-476)||(23025445-23025589)
chr7 (354-476)||(10993588-10993710)
chr7 (332-476)||(1873928-1874067)
chr7 (369-473)||(49113342-49113446)
chr7 (331-452)||(4267652-4267768)
chr7 (376-473)||(35710575-35710672)
chr7 (332-473)||(31271482-31271623)
chr7 (356-464)||(17471322-17471430)
chr7 (356-464)||(17581784-17581892)
chr7 (385-473)||(41202597-41202685)
chr7 (332-466)||(19106609-19106742)
chr7 (372-456)||(7505876-7505960)
chr7 (354-423)||(16526519-16526587)
chr7 (328-360)||(24764814-24764846)
chr7 (401-476)||(39489077-39489152)
chr7 (382-452)||(2620870-2620940)
chr7 (330-360)||(32796356-32796386)
chr7 (262-318)||(3904270-3904326)
[»] chr5 (22 HSPs)
chr5 (331-476)||(21732004-21732149)
chr5 (330-476)||(31230811-31230957)
chr5 (327-456)||(1845712-1845841)
chr5 (332-476)||(42859984-42860128)
chr5 (369-484)||(33907550-33907665)
chr5 (354-476)||(6238582-6238704)
chr5 (355-476)||(6900292-6900413)
chr5 (332-476)||(10641735-10641873)
chr5 (354-466)||(36016549-36016661)
chr5 (354-476)||(38355721-38355843)
chr5 (330-475)||(6955465-6955604)
chr5 (376-473)||(37205285-37205382)
chr5 (356-476)||(9996530-9996650)
chr5 (354-476)||(4695509-4695631)
chr5 (333-473)||(3435902-3436042)
chr5 (376-465)||(75628-75717)
chr5 (354-423)||(24477718-24477787)
chr5 (376-452)||(4970249-4970325)
chr5 (383-475)||(35038471-35038563)
chr5 (382-464)||(38975630-38975713)
chr5 (331-360)||(27344710-27344739)
chr5 (332-360)||(38975565-38975593)
[»] chr8 (12 HSPs)
chr8 (332-476)||(3940951-3941095)
chr8 (354-473)||(15244600-15244719)
chr8 (354-476)||(30436051-30436174)
chr8 (354-476)||(35813019-35813141)
chr8 (354-476)||(23221767-23221889)
chr8 (356-476)||(3654013-3654133)
chr8 (368-476)||(42738559-42738660)
chr8 (331-452)||(45450852-45450973)
chr8 (335-475)||(28968942-28969082)
chr8 (376-466)||(2350412-2350502)
chr8 (376-452)||(9201726-9201802)
chr8 (380-473)||(14772688-14772775)
[»] chr6 (14 HSPs)
chr6 (332-476)||(20143577-20143721)
chr6 (332-476)||(22189118-22189262)
chr6 (355-476)||(15071089-15071210)
chr6 (332-452)||(10998046-10998166)
chr6 (354-476)||(26519853-26519975)
chr6 (382-476)||(31470975-31471069)
chr6 (356-476)||(11369241-11369362)
chr6 (378-473)||(31654912-31655008)
chr6 (354-456)||(12271413-12271515)
chr6 (376-474)||(17868454-17868552)
chr6 (376-473)||(17878237-17878334)
chr6 (376-461)||(27965833-27965918)
chr6 (368-436)||(12075872-12075940)
chr6 (376-425)||(3045024-3045073)
[»] scaffold0564 (1 HSPs)
scaffold0564 (354-476)||(9817-9939)
[»] scaffold0219 (1 HSPs)
scaffold0219 (368-473)||(16431-16530)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 5280334 - 5280662
Alignment:
Q  1 gtcttgtttcttgcgttctannnnnnncgtgtgctttttcaatattaaaaagggatcctatcacattttcttgcactggtttttgtgtattagttgcaan 100  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  5280334 gtcttgtttcttgcgttctatttttttcgtgtgctttttcaatattaaaaagggatcctatcacattttcttgcactggtttttctgtattagttgcaat 5280433  T
Q  101 nnnnnnnnaaggaaataagattttagtcgtaatatatttgacatgataatagtgttttaaaaaagtagagtggaattaaaaagttataactctttttgtt 200  Q
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5280434 tcttttt-aaggaaataatattttagtcgtaatatatttgacatgataatagtgttttaaaaaagtagagtggaattaaaaagttataactctttttgtt 5280532  T
Q  201 ccacccacattccaaacaatgtagtggaaacatttcataaaatatgaaaacaatggaataaaattattgtgaagtcgagctcaaaatcactccaataaat 300  Q
    |||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5280533 ccacccacttttcaaacaatgtagtggaaacatttcataaaatatcaaaa-aatggaataaaattattgtgaattcgagctcaaaatcactccaataaat 5280631  T
Q  301 ttaaatgtgtggagtaaaggtaagtagtaac 331  Q
    ||| |||||||||||||||||||||||||||    
T  5280632 ttagatgtgtggagtaaaggtaagtagtaac 5280662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 2323471 - 2323615
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||| |||| ||||||||||| |||||||| ||||||||||| |||||  || | |    
T  2323471 tagagctgtcaaaacgggcggcccggccccgccggaccaagggcttttaagggtcgggctaaaaaacccggtttgaatatgggctgcaaaaaatgagccc 2323570  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||| ||| |||||||||    
T  2323571 gagcccggccctatacgggctcccgggctaatgggccagccctgg 2323615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 43285450 - 43285572
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    ||||||||  ||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||| ||||||||||||    
T  43285450 ccggcccggacgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctc 43285549  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  43285550 ccgggctaacgggccagccctgg 43285572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 354 - 475
Target Start/End: Original strand, 52463272 - 52463393
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    ||||||||| ||| ||||||| |||| ||||||||||||||||||||| ||| ||||||||||| ||||||||| | |||||||||| ||||||||||||    
T  52463272 ccggcccgatcgggccaagggcttttaagggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctc 52463371  T
Q  454 ccgagctaacgggtcagccctg 475  Q
    ||| ||||||||| ||||||||    
T  52463372 ccgggctaacgggccagccctg 52463393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 355 - 476
Target Start/End: Complemental strand, 17544269 - 17544148
Alignment:
Q  355 cggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcc 454  Q
    ||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| |||||||||||||    
T  17544269 cggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcc 17544170  T
Q  455 cgagctaacgggtcagccctgg 476  Q
    || ||||||||| |||||||||    
T  17544169 cgggctaacgggccagccctgg 17544148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 951772 - 951650
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  951772 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 951673  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| | |||||||    
T  951672 ccgggctaacgggccggccctgg 951650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 329 - 452
Target Start/End: Original strand, 3409787 - 3409915
Alignment:
Q  329 aactagagctgtcaaaacgggcgg-----tccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaa 423  Q
    ||||||||||||||||||||||||     ||||||||| | ||  |||||| |||| ||||||||||||||||||| ||||| ||||||||||| |||||    
T  3409787 aactagagctgtcaaaacgggcggcccggtccggcccggctgggtcaagggcttttaagggccgggctaaaaagcctggtttgaatatgggctgcaaaaa 3409886  T
Q  424 tagaacgcgagcccggctctatacgggct 452  Q
    |||| | |||||||||| |||||||||||    
T  3409887 tagagcccgagcccggccctatacgggct 3409915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 356 - 476
Target Start/End: Complemental strand, 47295982 - 47295862
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| |||||||||| |||    
T  47295982 ggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggccccc 47295883  T
Q  456 gagctaacgggtcagccctgg 476  Q
    | ||||||||| | |||||||    
T  47295882 gggctaacgggccggccctgg 47295862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 331 - 423
Target Start/End: Original strand, 54134171 - 54134263
Alignment:
Q  331 ctagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaa 423  Q
    |||||||||||||||||||||| |||||||| |||| ||||||| |||  ||||||||||||||||||||||||| ||||||||||| |||||    
T  54134171 ctagagctgtcaaaacgggcggcccggcccggccgggccaagggctttcaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaa 54134263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 356 - 475
Target Start/End: Complemental strand, 27870414 - 27870295
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| | |||||  || | |||||||||| ||||||||||||||    
T  27870414 ggcccgaccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggccgcaaaaaatgagcccgagcccggccctatacgggctccc 27870315  T
Q  456 gagctaacgggtcagccctg 475  Q
    | ||| ||||| | ||||||    
T  27870314 gggctgacgggccggccctg 27870295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 465
Target Start/End: Original strand, 20034001 - 20034097
Alignment:
Q  369 caagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgg 465  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||||| ||||||||    
T  20034001 caagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgg 20034097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 376 - 466
Target Start/End: Complemental strand, 44341866 - 44341776
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacggg 466  Q
    |||||||| ||||||| |||||||||||||||||| |||||| || |||||| | |||||||||| ||||||||||||||| |||||||||    
T  44341866 tttttaggaccgggctgaaaagcccggtttaaatacgggctgaaataatagagcccgagcccggccctatacgggctcccgggctaacggg 44341776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 32768471 - 32768383
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacg 464  Q
    |||| ||||||||||||||||||||| |||||||||||||  |||||||||| | ||||| |||| ||||||||||||||| |||||||    
T  32768471 ttttgagggccgggctaaaaagcccgatttaaatatgggcctgaaaaatagagcccgagcacggccctatacgggctcccgggctaacg 32768383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 32594875 - 32594799
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    ||||| |||||||||| |||||||||||||||||||||||||||| ||| || | |||||||||| |||||||||||    
T  32594875 tttttcgggccgggctgaaaagcccggtttaaatatgggctggaataattgagctcgagcccggccctatacgggct 32594799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 476
Target Start/End: Complemental strand, 45522905 - 45522785
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||||||||||||||||||||||| |||||||  || |||||  || | |||||||||| ||||||||||||||    
T  45522905 ggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatggattgcaaaaaatgagcccgagcccggccctatacgggctccc 45522806  T
Q  456 gagctaacgggtcagccctgg 476  Q
      ||||| ||| | |||||||    
T  45522805 aggctaatgggccggccctgg 45522785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 376 - 475
Target Start/End: Original strand, 34858318 - 34858417
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
    |||| ||||||||||| |||||||  |||| ||||||||||||||||||||| | |||||||||| || |||||||| ||| ||||||| | ||||||||    
T  34858318 ttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgagcccggccctgtacgggcttccgggctaacgagccagccctg 34858417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 377 - 452
Target Start/End: Original strand, 44857030 - 44857105
Alignment:
Q  377 ttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||| |||||| |  ||||||||| |||||||||||    
T  44857030 ttttaggaccgggctaataagcccggtttaaatacgggctggaataatagatcttgagcccggccctatacgggct 44857105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 329 - 423
Target Start/End: Complemental strand, 16030578 - 16030489
Alignment:
Q  329 aactagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaa 423  Q
    ||||||||||||||||||||||| |||| ||     || ||||||| |||| |||  |||||||||||||||||||| |||||||||||||||||    
T  16030578 aactagagctgtcaaaacgggcgatccgtcc-----gggccaagggcttttaaggaacgggctaaaaagcccggtttgaatatgggctggaaaaa 16030489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 50005554 - 50005493
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggc 415  Q
    |||||| |||| | ||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  50005554 ccggcctgaccagcccaagggctttttagggccgggctgaaaagtccggtttaaatatgggc 50005493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 1324041 - 1324161
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||| ||||  ||| | | | | ||||||||||||| || ||||||||||||| ||||||  || ||||||| || | |    
T  1324041 tagagctgtcaaaacgggcggcccgacccggtcgggcaacgagctttttagggccggactgaaaagcccggtttgaatatgaacttgaaaaatggagccc 1324140  T
Q  432 gagcccggctctatacgggct 452  Q
    ||| | ||| |||||||||||    
T  1324141 gagtctggccctatacgggct 1324161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 376 - 459
Target Start/End: Complemental strand, 41362052 - 41361969
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagc 459  Q
    |||||| |||||||||||| | |||  |||||||| ||||||||| ||| || | |||||||||| |||||| |||||||||||    
T  41362052 tttttaaggccgggctaaacatccctatttaaataagggctggaataattgagcccgagcccggccctatacaggctcccgagc 41361969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 335 - 452
Target Start/End: Original strand, 9454469 - 9454586
Alignment:
Q  335 agctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgag 434  Q
    |||||||||||||| ||| ||||||||| ||  |   ||| |||  |||||||||||||||| |||| |||||||||||| ||||| ||| || | ||||    
T  9454469 agctgtcaaaacggacggcccggcccgatcgagcagcgggctttgcagggccgggctaaaaaacccgatttaaatatgggttggaataattgagcccgag 9454568  T
Q  435 cccggctctatacgggct 452  Q
    ||| || ||||| |||||    
T  9454569 cccagccctatatgggct 9454586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 372 - 420
Target Start/End: Complemental strand, 19244563 - 19244515
Alignment:
Q  372 gggttttttagggccgggctaaaaagcccggtttaaatatgggctggaa 420  Q
    ||||||||| ||| ||||||||||| ||||||||||||| |||||||||    
T  19244563 gggtttttttgggtcgggctaaaaaacccggtttaaatacgggctggaa 19244515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 1704507 - 1704558
Alignment:
Q  386 cgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagccc 437  Q
    |||||| |||||||| |||| ||||||||||||||||||||| | |||||||    
T  1704507 cgggctgaaaagccctgtttgaatatgggctggaaaaatagagcccgagccc 1704558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 404
Target Start/End: Complemental strand, 35393405 - 35393330
Alignment:
Q  329 aactagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtt 404  Q
    ||||||||||||||||||||||||  |||||| | ||| |   ||| |||| |||||||||| |||||||||||||    
T  35393405 aactagagctgtcaaaacgggcggctcggccctagcgggcttcgggcttttgagggccgggccaaaaagcccggtt 35393330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 32768530 - 32768501
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  32768530 tagagctgtcaaaacgggcggtccggcccg 32768501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 356 - 682
Target Start/End: Complemental strand, 4221968 - 4221647
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||||| ||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||    
T  4221968 ggcccgacgggggcaagggctttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagagcccgagcccggccctatacgggctccc 4221869  T
Q  456 gagctaacgggtcagccctggtccattttggttannnnnnnnnnnnnnnnnnnnnnaaggactgaaaacataataacataaacataattgtacccatata 555  Q
    ||||||||||| ||||||||| || |||||||||                      |||| |||||||||||||||||| ||||||||||||||||||||    
T  4221868 gagctaacgggccagccctggcccgttttggttatttttttttccattttt-----aagggctgaaaacataataacatcaacataattgtacccatata 4221774  T
Q  556 ttattaacacctgctcaaaacacacgtgttagcatttcatattttttgtttaaaaaactatatcaaatttattatatcatgaggaatcctatttattatc 655  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4221773 ttattagcacctgctcaaaacacacgtgttagcatttcatattttttgtttaaaaaactatatcaaatttattatatcatgaggaatcctatttattatc 4221674  T
Q  656 gttaatttgttatcatattcttcgaca 682  Q
    |||||||||||||||||||||| ||||    
T  4221673 gttaatttgttatcatattcttggaca 4221647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 552 - 682
Target Start/End: Original strand, 48384115 - 48384245
Alignment:
Q  552 tatattattaacacctgctcaaaacacacgtgttagcatttcatattttttgtttaaaaaactatatcaaatttattatatcatgaggaatcctatttat 651  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||  || |||||||||||||| |||||||| ||| |||||||||||||||||    
T  48384115 tatattattaacacctgctcaaaacacacatgttggcatttcatatttttgtttaaaaaaactatatcatatttattaaatcctgaggaatcctatttat 48384214  T
Q  652 tatcgttaatttgttatcatattcttcgaca 682  Q
    |||||||||||||||||||||||||| ||||    
T  48384215 tatcgttaatttgttatcatattcttggaca 48384245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 12750016 - 12749872
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  12750016 tagagctgtcaaaacgggcggcccggcccgaccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 12749917  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| || | |||||||||| ||||||||| |||||||||    
T  12749916 gagcccggccctcttcgggctcccgggctaacgggccagccctgg 12749872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 332 - 475
Target Start/End: Complemental strand, 46158499 - 46158356
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||||| ||  | | ||| |||| |||||||||||||||||||||||||||||||||||  |||||||||| | |    
T  46158499 tagagctgtcaaaacgggcggcccggcccgaacgagcaacgggcttttgagggccgggctaaaaagcccggtttaaatatgggcctgaaaaatagagccc 46158400  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||    
T  46158399 gagcccggccctatacgggctcccgggctaacgggccagccctg 46158356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 43780845 - 43780989
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||| | |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  43780845 tagagctgtcaaaacgggcggcccggcctggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 43780944  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||||||||||||||||||| ||||| ||| | |||||||    
T  43780945 gagcccggctctatacgggctcccgggctaatgggccggccctgg 43780989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 45756920 - 45757058
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||||| ||     ||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||| || | |    
T  45756920 tagagctgtcaaaacgggcggcccggcccggcc-----aagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaat-gagccc 45757013  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  45757014 gagcccggccctatacgggctcccgggctaacgggccggccctgg 45757058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 354 - 466
Target Start/End: Complemental strand, 33189430 - 33189318
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||| ||||||||||||||||| |||||  || | |||||||||| ||||||||||||    
T  33189430 ccggcccggccgggccaagggcttttaagggccgggctaaaaagccaggtttaaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 33189331  T
Q  454 ccgagctaacggg 466  Q
    ||| |||||||||    
T  33189330 ccgggctaacggg 33189318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 355 - 473
Target Start/End: Complemental strand, 17332198 - 17332081
Alignment:
Q  355 cggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcc 454  Q
    ||||||| |||| ||||||| |||| ||||||||||||||||||| ||||| |||||||| |||||||||||| | |||||||||| || ||||||||||    
T  17332198 cggcccggccgggccaagggcttttaagggccgggctaaaaagcc-ggtttgaatatgggttggaaaaatagagcccgagcccggccctttacgggctcc 17332100  T
Q  455 cgagctaacgggtcagccc 473  Q
     | ||||||||| ||||||    
T  17332099 tgggctaacgggccagccc 17332081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 43263179 - 43263276
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||||||| ||||||||||||||||||||| |||||| || |||||| | |||||||||| ||||||||||||||| ||||| ||| ||||||    
T  43263179 tttttagggccggactaaaaagcccggtttaaatacgggctgaaataatagagctcgagcccggccctatacgggctcccgggctaatgggccagccc 43263276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 332 - 473
Target Start/End: Original strand, 48469591 - 48469727
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||||||||||||||||||||     ||||||||| ||||||| |||| ||| ||||||||||||||| ||||| ||| ||||||||||||||||| | |    
T  48469591 tagagctgtcaaaacgggcgg-----cccgaccgggccaagggcttttaaggaccgggctaaaaagcctggtttgaatttgggctggaaaaatagagccc 48469685  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
     |||||||| || ||||||||  || ||||||||| ||||||    
T  48469686 aagcccggccctttacgggctttcgggctaacgggacagccc 48469727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 476
Target Start/End: Original strand, 9660522 - 9660642
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||  ||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||||    
T  9660522 ggcccggccgggccaagggcttttaagggttgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctccc 9660621  T
Q  456 gagctaacgggtcagccctgg 476  Q
    | ||||||||| | |||||||    
T  9660622 gggctaacgggccggccctgg 9660642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 401
Target Start/End: Original strand, 42763001 - 42763070
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccg 401  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||    
T  42763001 tagagctgtcaaaacgggcggtccggcccggccgggccaagggcttttaagggccgggctaaaaagcccg 42763070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 363 - 472
Target Start/End: Complemental strand, 45566647 - 45566539
Alignment:
Q  363 ccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaa 462  Q
    |||| |||| || |||| ||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||| |||||||||||  |||||    
T  45566647 ccgggccaatggcttttaagggccgggctaaaaagcccggtttgaatatgggct-gaaaaatagagcccgagcccggctctttacgggctccccggctaa 45566549  T
Q  463 cgggtcagcc 472  Q
    | || |||||    
T  45566548 caggccagcc 45566539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 47188271 - 47188364
Alignment:
Q  383 ggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    |||| |||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||| ||||| ||||||||| |||||||||    
T  47188271 ggcccggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggttcccgggctaacgggccagccctgg 47188364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 376 - 466
Target Start/End: Original strand, 24682295 - 24682385
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacggg 466  Q
    |||||||||||||| | |||||||||| |||||||||||||||||  ||||| | |||||||||  |||||||||| |||| |||||||||    
T  24682295 tttttagggccgggatgaaaagcccggattaaatatgggctggaattatagagcccgagcccgggcctatacgggcacccgggctaacggg 24682385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 452
Target Start/End: Complemental strand, 32058245 - 32058147
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    |||||||||||||  |||||| |||| |||| |||||||||||| || |||| ||||||| |||||||| |||||| |||||||||| || ||||||||    
T  32058245 ccggcccgaccgggtcaagggcttttaagggtcgggctaaaaagtccagtttgaatatggactggaaaagtagaacccgagcccggccctttacgggct 32058147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 363 - 473
Target Start/End: Original strand, 49228492 - 49228603
Alignment:
Q  363 ccggaccaagggttttttagggccgggctaaaaagcccggtttaaatat-gggctggaaaaatagaacgcgagcccggctctatacgggctcccgagcta 461  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||| ||||| ||||||||||| |||| | ||||| |||| || |||||||||| |  |||    
T  49228492 ccgggccaagggcttttgagggccgggctaaaaaggccggtttgaatatggggctggaaaagtagagcccgagctcggccctttacgggctcctggacta 49228591  T
Q  462 acgggtcagccc 473  Q
    ||||| ||||||    
T  49228592 acgggccagccc 49228603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 473
Target Start/End: Original strand, 31488843 - 31488945
Alignment:
Q  372 gggttttttagggccgggctaaaaagcccggtttaaa-tatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcag 470  Q
    |||||||||||||| |||  |||||| |||||||||| |||||||||||| ||| || |  || |||||| ||||||||||||||| ||||||||| |||    
T  31488843 gggttttttagggctgggtcaaaaagtccggtttaaaatatgggctggaataattgagcttgaacccggccctatacgggctcccgggctaacgggccag 31488942  T
Q  471 ccc 473  Q
    |||    
T  31488943 ccc 31488945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 466
Target Start/End: Complemental strand, 6502088 - 6502010
Alignment:
Q  388 ggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacggg 466  Q
    |||||||||| ||||||| ||||||||||||||||||||| | |||| ||||| || ||||| |||||| ||| |||||    
T  6502088 ggctaaaaagtccggtttgaatatgggctggaaaaatagagcccgagtccggccctttacggactcccgggcttacggg 6502010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 360
Target Start/End: Original strand, 35984932 - 35984962
Alignment:
Q  330 actagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||||||||||||||||||||||||    
T  35984932 actagagctgtcaaaacgggcggtccggccc 35984962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 361
Target Start/End: Original strand, 23973636 - 23973669
Alignment:
Q  328 taactagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||| ||||||||    
T  23973636 taactagagctgtcaaaacgggcggcccggcccg 23973669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Original strand, 40411981 - 40412010
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  40411981 tagagctgtcaaaacgggcggtccggcccg 40412010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 45040192 - 45040095
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||| |||| ||| ||||||| |||  ||||||||  ||||||||  ||||| | |||| |||||  |||||||||||||| ||||||||| ||||||    
T  45040192 ttttcagggtcggactaaaaaaccctatttaaatacaggctggaatcatagagcccgagtccggccttatacgggctcccgggctaacgggccagccc 45040095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Original strand, 47188242 - 47188271
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  47188242 tagagctgtcaaaacgggcggtccggcccg 47188271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Original strand, 50511431 - 50511460
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  50511431 tagagctgtcaaaacgggcggtccggcccg 50511460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 360
Target Start/End: Complemental strand, 44922866 - 44922838
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||||||||||||||||||||||    
T  44922866 tagagctgtcaaaacgggcggtccggccc 44922838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 181; Significance: 2e-97; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 332 - 682
Target Start/End: Original strand, 26843495 - 26843839
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||  || | |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||   |    
T  26843495 tagagctgtcaaaacgggcgaccccgtccgaccgggccaagggatttttagggccgggctaaaaagcccagtttaaatatgtgctggaaaaatagaggcc 26843594  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctggtccattttggttannnnnnnnnnnnnnnnnnnnnnaaggactgaaaacataataa 531  Q
    ||||||||| |||||||| |||||| ||||||||| ||||||||  || |||||||||                      ||| ||||||||||||||||    
T  26843595 gagcccggccctatacggactcccgggctaacgggccagccctgacccgttttggttattttttttcattttt-------aagaactgaaaacataataa 26843687  T
Q  532 cataaacataattgtacccatatattattaacacctgctcaaaacacacgtgttagcatttcata-ttttttgtttaaaaaactatatcaaatttattat 630  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26843688 catcaacataattgtacccatatattattagcacctgctcaaaacacacgtgttagcatttcatatttttttgtttaaaaaactatatcaaatttattat 26843787  T
Q  631 atcatgaggaatcctatttattatcgttaatttgttatcatattcttcgaca 682  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26843788 atcctgaggaatcctatttattatcgttaatttgttatcatattcttggaca 26843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 46219525 - 46219386
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||||||||||     || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  46219525 tagagctgtcaaaacgggcggtccggcc-----gggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 46219431  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  46219430 gagcccggccctatacgggctcccgggctaacgggccggccctgg 46219386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 6884283 - 6884405
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  6884283 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 6884382  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  6884383 ccgggctaacgggccagccctgg 6884405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 43745869 - 43745991
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  43745869 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 43745968  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  43745969 ccgggctaacgggccagccctgg 43745991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 368 - 476
Target Start/End: Complemental strand, 33986221 - 33986113
Alignment:
Q  368 ccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggt 467  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||| |||||||||||||||  ||||||||     
T  33986221 ccaagggcttttaagggccgggctaaaaagcccggttttaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccggactaacgggc 33986122  T
Q  468 cagccctgg 476  Q
    |||||||||    
T  33986121 cagccctgg 33986113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 27877935 - 27877813
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  27877935 ccggcccggccgggccaagggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 27877836  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  27877835 ccgggctaacgggccagccctgg 27877813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 465
Target Start/End: Original strand, 50737125 - 50737256
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| || ||||| || |  |  ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  50737125 tagagctgtcaaaacgggcggccctgcccggcccgttc--gggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagccc 50737222  T
Q  432 gagcccggctctatacgggctcccgagctaacgg 465  Q
    ||||||||| || |||||||||||| ||||||||    
T  50737223 gagcccggccctttacgggctcccgggctaacgg 50737256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 332 - 465
Target Start/End: Complemental strand, 50775730 - 50775599
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| || ||||| || |  |  ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  50775730 tagagctgtcaaaacgggcggccctgcccggcccgttc--gggcttttaagggccgggctaaaaagcccggtttgaatatgggctggaaaaatagagccc 50775633  T
Q  432 gagcccggctctatacgggctcccgagctaacgg 465  Q
    ||||||||| || |||||||||||| ||||||||    
T  50775632 gagcccggccctttacgggctcccgggctaacgg 50775599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 383 - 476
Target Start/End: Original strand, 21075611 - 21075704
Alignment:
Q  383 ggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||||| ||||||||||| |||||||    
T  21075611 ggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggtcggccctgg 21075704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 381 - 473
Target Start/End: Complemental strand, 43736661 - 43736569
Alignment:
Q  381 agggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||||||||||||||| |||| |||||||||||||||| |||| | |||||||||| || |||||||||||| ||||||||| ||||||    
T  43736661 agggccgggctaaaaagcccagtttgaatatgggctggaaaagtagagcccgagcccggccctttacgggctcccgggctaacgggccagccc 43736569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 26319297 - 26319202
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaataga 427  Q
    ||||||||||||||||| ||||||| ||||| ||| | | | | |||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  26319297 tagagctgtcaaaacggacggtccgacccgaacgggcaacgagcttttgagggccgggctaaaaagtctggtttaaatatgggctggaaaaataga 26319202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 376 - 475
Target Start/End: Complemental strand, 46312247 - 46312148
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
    |||| |||||||| |||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||||| ||||||||| | ||||||    
T  46312247 ttttaagggccggactaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcccgggctaacgggccggccctg 46312148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 372 - 449
Target Start/End: Complemental strand, 11486299 - 11486222
Alignment:
Q  372 gggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgg 449  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||  ||||| | |||||||||| ||||||||    
T  11486299 gggttttttaggaccgggctaaaaagcccggtttaaatacgggctggaatgatagagcccgagcccggccctatacgg 11486222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 387 - 472
Target Start/End: Complemental strand, 19976501 - 19976416
Alignment:
Q  387 gggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagcc 472  Q
    |||||||||||||| ||||||||||| ||||||| | |||| | |||||||||| ||||||||||||||| |||| |||| |||||    
T  19976501 gggctaaaaagcccagtttaaatatgtgctggaatattagagcccgagcccggccctatacgggctcccgggctatcgggccagcc 19976416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 15326361 - 15326274
Alignment:
Q  380 tagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||| ||||||||||| |||||||||||||||| ||| |||       ||||||| | ||||| ||||||||| ||||||||| ||||||    
T  15326361 tagggccgagctaaaaagccaggtttaaatatgggctagaataat------tgagcccgaccctatatgggctcccgggctaacgggccagccc 15326274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 473
Target Start/End: Complemental strand, 24311792 - 24311722
Alignment:
Q  403 tttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||| |||||| || |||||| | |||||||| | ||||||||||| ||| || |||||||||||||    
T  24311792 tttaaatacgggctgaaataatagagctcgagcccgaccctatacgggcttccgggcaaacgggtcagccc 24311722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 473
Target Start/End: Complemental strand, 20511345 - 20511246
Alignment:
Q  372 gggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagc 471  Q
    ||||||||||||  |||| |||||| |||  |||||||| ||||||||| ||| || |  ||||| ||| ||||||||||||||| ||||||||| ||||    
T  20511345 gggttttttaggatcgggttaaaaaaccctatttaaataagggctggaataattgagcctgagcc-ggc-ctatacgggctcccgggctaacgggccagc 20511248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 36638683 - 36638614
Alignment:
Q  382 gggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggc 451  Q
    ||||||||||||||||||||||| ||| | ||||| |||| |||  || |||||||||| ||| ||||||    
T  36638683 gggccgggctaaaaagcccggttgaaaaacgggcttgaaatatactacccgagcccggccctacacgggc 36638614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 36638741 - 36638712
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  36638741 tagagctgtcaaaacgggcggtccggcccg 36638712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 360
Target Start/End: Original strand, 42480473 - 42480506
Alignment:
Q  327 gtaactagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||| |||||||||||||||||||||||    
T  42480473 gtaactagagttgtcaaaacgggcggtccggccc 42480506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 4e-43; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 330 - 475
Target Start/End: Original strand, 40860710 - 40860855
Alignment:
Q  330 actagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaac 429  Q
    ||||||||||||||||||||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || |    
T  40860710 actagagctgtcaaaacgggcggcccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagc 40860809  T
Q  430 gcgagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
     |||||||||| ||||||||||||||| ||||||||||| ||||||    
T  40860810 ccgagcccggccctatacgggctcccgggctaacgggtcggccctg 40860855  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 332 - 481
Target Start/End: Original strand, 29205667 - 29205816
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||||| || | ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  29205667 tagagctgtcaaaacgggcggcccggcccggcccggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 29205766  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctggtccat 481  Q
    ||||||||| ||||||| ||||||| ||||||||| ||||||||| ||||    
T  29205767 gagcccggccctatacgagctcccgggctaacgggccagccctggcccat 29205816  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 332 - 473
Target Start/End: Original strand, 26555813 - 26555954
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||||  ||||| | ||| ||||||||||||||||||||||||| |||||||||||||||| || ||| || | |    
T  26555813 tagagctgtcaaaacgggcggcccggcccggtcggacaacgggctttttagggccgggctaaaaagccctgtttaaatatgggctgaaataatggagccc 26555912  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||| |||||| |||||||| ||||||||| ||||||    
T  26555913 gagcccggccctatacaggctcccgggctaacgggccagccc 26555954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 21104409 - 21104287
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  21104409 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 21104310  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  21104309 ccgggctaacgggccagccctgg 21104287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 25096705 - 25096566
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||     || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |  || | |    
T  25096705 tagagctgtcaaaacgggcggcccggcc-----gggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataatgagccc 25096611  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  25096610 gagcccggccctatacgggctcccgggctaacgggccggccctgg 25096566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 332 - 466
Target Start/End: Original strand, 40000472 - 40000601
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||     |  ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  40000472 tagagctgtcaaaacgggcggcccggcc-----gagccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 40000566  T
Q  432 gagcccggctctatacgggctcccgagctaacggg 466  Q
    ||||||||| ||||||||||||||| |||||||||    
T  40000567 gagcccggccctatacgggctcccgggctaacggg 40000601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 38837342 - 38837439
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||||||||||||||||||||||||||||||  ||||| || |||||| | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  38837342 tttttagggccgggctaaaaagcccggtttaaatacaggctgaaataatagagcccgagcccggccctatacgggctcccgggctaacgggccagccc 38837439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 9471734 - 9471630
Alignment:
Q  369 caagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtc 468  Q
    |||||| |||| ||| |||||||||||||||| |||| ||||||||||| ||||||||| | |||||||||| || |||||||||||| ||||||||| |    
T  9471734 caagggcttttaaggcccgggctaaaaagcccagtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggctcccgggctaacggggc 9471635  T
Q  469 agccc 473  Q
    |||||    
T  9471634 agccc 9471630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 15560279 - 15560380
Alignment:
Q  351 ggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacggg 450  Q
    ||||||||||| |||| ||||||| |||| ||||||||| ||||||||||||||| ||||||||||| |||||  || | |||||||||| |||||||||    
T  15560279 ggtccggcccggccgggccaagggattttaagggccgggttaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacggg 15560378  T
Q  451 ct 452  Q
    ||    
T  15560379 ct 15560380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 355 - 476
Target Start/End: Original strand, 15613344 - 15613464
Alignment:
Q  355 cggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcc 454  Q
    |||||||| ||| | | ||| |||| |||||||||||||||  ||||||||||||||||||   ||||||||| | |||||||||| |||||||||||||    
T  15613344 cggcccgaacgggcaacgggcttttgagggccgggctaaaat-cccggtttaaatatgggcctaaaaaatagagcccgagcccggccctatacgggctcc 15613442  T
Q  455 cgagctaacgggtcagccctgg 476  Q
    || ||||||||| |||||||||    
T  15613443 cgggctaacgggccagccctgg 15613464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 375 - 473
Target Start/End: Complemental strand, 38571465 - 38571367
Alignment:
Q  375 ttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||||| ||||||||||||||| |||||||| |||||| || |||||| | |||||||||| |||||||||||| ||  |||||||| ||||||    
T  38571465 ttttttagggctgggctaaaaagcccgatttaaatacgggctgtaataatagagctcgagcccggccctatacgggctctcggactaacgggccagccc 38571367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 473
Target Start/End: Complemental strand, 17921587 - 17921483
Alignment:
Q  368 ccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggt 467  Q
    ||||||| |||| ||||||||||||||||||| ||||| |||||||||||| |||||||| | |||||||||| || | |||||||| | |||||||||     
T  17921587 ccaagggcttttaagggccgggctaaaaagcctggtttgaatatgggctgg-aaaatagagcccgagcccggccctttgcgggctcctgggctaacgggc 17921489  T
Q  468 cagccc 473  Q
    ||||||    
T  17921488 cagccc 17921483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 336 - 476
Target Start/End: Original strand, 42730036 - 42730176
Alignment:
Q  336 gctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagc 435  Q
    ||||||||||||||  | ||||||||| |||   | ||| |||| ||||||||||| |||||||| |||| ||||||||||| ||||||||| | |||||    
T  42730036 gctgtcaaaacgggtcgcccggcccgatcgggtaacgggcttttaagggccgggctgaaaagccctgtttgaatatgggctgaaaaaatagagcccgagc 42730135  T
Q  436 ccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||| || |||| ||| ||  ||||||||| |||||||||    
T  42730136 ccggccctgtacgtgcttccaggctaacgggccagccctgg 42730176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 5272059 - 5271915
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggt-tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacg 430  Q
    ||||||||||||||||||||| ||||||||     | ||| ||| ||||||| | |||||| ||||||||| ||||||||||| | |||||||| || |     
T  5272059 tagagctgtcaaaacgggcggcccggcccggtta-agcaacggtctttttagagtcgggctgaaaagcccgctttaaatatggaccggaaaaatggagcc 5271961  T
Q  431 cgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    |||||||||| ||||||||||| | | ||||||||| |||||||||    
T  5271960 cgagcccggccctatacgggcttctgggctaacgggccagccctgg 5271915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 4469924 - 4470021
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||| |||||||||||||  | |||| ||||||| ||| || ||| || | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  4469924 tttttaggcccgggctaaaaagatctgtttgaatatggactgaaataatggagcccgagcccggccctatacgggctcccgggctaacgggccagccc 4470021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 456
Target Start/End: Original strand, 20921945 - 20922026
Alignment:
Q  376 tttttagggccgggct-aaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccg 456  Q
    ||||| |||||| ||| ||||||||||||||||||||||||||||| ||| || | ||||  |||| |||||||| ||||||    
T  20921945 ttttttgggccgagctgaaaaagcccggtttaaatatgggctggaataattgagcccgagtgcggccctatacggactcccg 20922026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 28223580 - 28223551
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccg 361  Q
    ||||||||||||||||||||||||||||||    
T  28223580 tagagctgtcaaaacgggcggtccggcccg 28223551  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 10822302 - 10822330
Alignment:
Q  372 gggttttttagggccgggctaaaaagccc 400  Q
    |||||||||||||||||||||||||||||    
T  10822302 gggttttttagggccgggctaaaaagccc 10822330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 4e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 23025589 - 23025445
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  23025589 tagagctgtcaaaacgggcggcccggctcgaccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 23025490  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  23025489 gagcccggccctatacgggctcccgggctaacgggccggccctgg 23025445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 10993710 - 10993588
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  10993710 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 10993611  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  10993610 ccgggctaacgggccagccctgg 10993588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 1874067 - 1873928
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| ||||||     || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  1874067 tagagctgtcaaaacgggcggcccggcc-----gggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 1873973  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  1873972 gagcccggccctatacgggctcccgggctaacgggccggccctgg 1873928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 369 - 473
Target Start/End: Complemental strand, 49113446 - 49113342
Alignment:
Q  369 caagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtc 468  Q
    ||||| ||||| ||||||||||||||||  ||||||| ||||||||||||||||||||| | |||||||||| || |||||||||||| ||||||||| |    
T  49113446 caaggatttttaagggccgggctaaaaaatccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgggctcccgggctaacgggcc 49113347  T
Q  469 agccc 473  Q
    |||||    
T  49113346 agccc 49113342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 331 - 452
Target Start/End: Complemental strand, 4267768 - 4267652
Alignment:
Q  331 ctagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacg 430  Q
    ||||||||||||||||||| || ||||||     || ||||||| |||| |||| |||||||||||||||||||| ||||||||||||||||||||| |     
T  4267768 ctagagctgtcaaaacgggtggcccggcc-----gggccaagggcttttaagggtcgggctaaaaagcccggtttgaatatgggctggaaaaatagagcc 4267674  T
Q  431 cgagcccggctctatacgggct 452  Q
    |||||||||| || ||||||||    
T  4267673 cgagcccggccctttacgggct 4267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 35710672 - 35710575
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| ||| || | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  35710672 tttttagggccgggctaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggctcccgggctaacgggccagccc 35710575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 332 - 473
Target Start/End: Original strand, 31271482 - 31271623
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||||||||||||||||||   ||||||||| |||     ||| ||||| |||||||||||||||| |||||||||||| |||||| || | |||| | |    
T  31271482 tagagctgtcaaaacgggctacccggcccgaacgggtagcgggctttttcgggccgggctaaaaagtccggtttaaatacgggctgaaatattagagccc 31271581  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||| ||||||||||||||| |||| |||| ||||||    
T  31271582 gagcccggccctatacgggctcccgggctatcgggccagccc 31271623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 356 - 464
Target Start/End: Original strand, 17471322 - 17471430
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||||||||||||||| ||||||| ||||| || |||||||||||| | |||||||||| || ||||| |||||    
T  17471322 ggcccggccgggccaagggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccctttacggactccc 17471421  T
Q  456 gagctaacg 464  Q
    | |||||||    
T  17471422 gggctaacg 17471430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 356 - 464
Target Start/End: Complemental strand, 17581892 - 17581784
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||||||||||||||| ||||||| ||||| || |||||||||||| | |||||||||| || ||||| |||||    
T  17581892 ggcccggccgggccaagggcttttaagggccgggctaaaaagtccggtttgaatataggttggaaaaatagagcccgagcccggccctttacggactccc 17581793  T
Q  456 gagctaacg 464  Q
    | |||||||    
T  17581792 gggctaacg 17581784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 41202685 - 41202597
Alignment:
Q  385 ccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||| |||||||||||||||| ||||||||||||||||||||| | |||||||||| || |||| ||||||| ||||||||| ||||||    
T  41202685 ccggactaaaaagcccggtttgaatatgggctggaaaaatagagcccgagcccggccctttacgagctcccgggctaacgggccagccc 41202597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 332 - 466
Target Start/End: Complemental strand, 19106742 - 19106609
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||||||||||||||||  ||| ||||||||||||   | ||||||||  |||| ||||| || ||||||| ||||||||||||||||| ||| || | |    
T  19106742 tagagctgtcaaaacggatggttcggcccgaccgggtaacgggtttttc-gggctgggctgaatagcccggcttaaatatgggctggaataattgagccc 19106644  T
Q  432 gagcccggctctatacgggctcccgagctaacggg 466  Q
    ||||||||  ||||||||||||||| |||||||||    
T  19106643 gagcccggtcctatacgggctcccgggctaacggg 19106609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 372 - 456
Target Start/End: Complemental strand, 7505960 - 7505876
Alignment:
Q  372 gggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccg 456  Q
    ||||||||| | ||||||||||||||||| ||||||||| ||||||||| | |||| | ||||| |||| |||||||||||||||    
T  7505960 gggttttttcgagccgggctaaaaagccctgtttaaatacgggctggaatattagagcccgagctcggccctatacgggctcccg 7505876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 16526587 - 16526519
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaa 423  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||| ||||||| |||||    
T  16526587 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaat-tgggctgcaaaaa 16526519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 24764846 - 24764814
Alignment:
Q  328 taactagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||||||||||||||||||||||||||    
T  24764846 taactagagctgtcaaaacgggcggtccggccc 24764814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 39489077 - 39489152
Alignment:
Q  401 ggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||| ||||||||||| |||||  || | |||||||||| || | |||||||||| ||||||||| |||||||||    
T  39489077 ggtttgaatatgggctgcaaaaaatgagcccgagcccggccctcttcgggctcccgggctaacgggccagccctgg 39489152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 452
Target Start/End: Original strand, 2620870 - 2620940
Alignment:
Q  382 gggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    |||||||||||||||||| || |  |||||| ||| |||||||||||| ||||||| || |||| ||||||    
T  2620870 gggccgggctaaaaagcctgggtgtaatatgagctcgaaaaatagaacccgagcccagccctatgcgggct 2620940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 360
Target Start/End: Complemental strand, 32796386 - 32796356
Alignment:
Q  330 actagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||||||||||||||||||||||||    
T  32796386 actagagctgtcaaaacgggcggtccggccc 32796356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 3904270 - 3904326
Alignment:
Q  262 aattattgtgaagtcgagctcaaaatcactccaataaatttaaatgtgtggagtaaa 318  Q
    |||||||||||| | || |||||||| || || ||||||||| ||||||||||||||    
T  3904270 aattattgtgaatttgaactcaaaatgacacctataaatttagatgtgtggagtaaa 3904326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 331 - 476
Target Start/End: Complemental strand, 21732149 - 21732004
Alignment:
Q  331 ctagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacg 430  Q
    |||||||||||||||||||||| |||||| | |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || |     
T  21732149 ctagagctgtcaaaacgggcggcccggccgggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcc 21732050  T
Q  431 cgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    |||||||||| ||||||||||||||| ||||||||| | |||||||    
T  21732049 cgagcccggccctatacgggctcccgggctaacgggccggccctgg 21732004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 330 - 476
Target Start/End: Complemental strand, 31230957 - 31230811
Alignment:
Q  330 actagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaac 429  Q
    ||||||| ||||||||||||||| ||||||||| ||| | |  |  ||||||| ||||||||||||| |||||||||||||||||||||||||||||  |    
T  31230957 actagagttgtcaaaacgggcggcccggcccgatcgggcaacagactttttagagccgggctaaaaaacccggtttaaatatgggctggaaaaatagggc 31230858  T
Q  430 gcgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
     |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  31230857 ccgagcccggccctatacgggctcccgggctaacgggccagccctgg 31230811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 327 - 456
Target Start/End: Complemental strand, 1845841 - 1845712
Alignment:
Q  327 gtaactagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatag 426  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||| |  |    
T  1845841 gtaattagagctgtcaaaacgggcggtccggccgggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaataatg 1845742  T
Q  427 aacgcgagcccggctctatacgggctcccg 456  Q
    | | |||||||||| |||||||||||||||    
T  1845741 agcccgagcccggccctatacgggctcccg 1845712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 42859984 - 42860128
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||||||||||||||||| || |||||| | |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |    
T  42859984 tagagctgtcaaaacgggtggcccggccgggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagccc 42860083  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||| ||||| ||||||||||||||| ||||||||| | |||||||    
T  42860084 gagtccggccctatacgggctcccgggctaacgggccggccctgg 42860128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 369 - 484
Target Start/End: Original strand, 33907550 - 33907665
Alignment:
Q  369 caagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtc 468  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| | || |||||||||||||||||||||| |    
T  33907550 caagggcttttaagggccgggctaaaaagcccgatttaaatatgggctggaaaaatagagcccgagcccgaccctttacgggctcccgagctaacgggcc 33907649  T
Q  469 agccctggtccatttt 484  Q
    ||||| || |||||||    
T  33907650 agcccaggcccatttt 33907665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 6238704 - 6238582
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  6238704 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 6238605  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  6238604 ccgggctaacgggccagccctgg 6238582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 355 - 476
Target Start/End: Complemental strand, 6900413 - 6900292
Alignment:
Q  355 cggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcc 454  Q
    ||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| |||||||||||||    
T  6900413 cggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcc 6900314  T
Q  455 cgagctaacgggtcagccctgg 476  Q
    || ||||||||| |||||||||    
T  6900313 cgggctaacgggccagccctgg 6900292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 10641735 - 10641873
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||  |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||            
T  10641735 tagagctgtcaaaacgggcgccccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaa------at 10641828  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  10641829 gagcccggccctatacgggctcccgggctaacgggccggccctgg 10641873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 354 - 466
Target Start/End: Complemental strand, 36016661 - 36016549
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  36016661 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 36016562  T
Q  454 ccgagctaacggg 466  Q
    ||| |||||||||    
T  36016561 ccgggctaacggg 36016549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 38355721 - 38355843
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  38355721 ccggcccggccgggccaagggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 38355820  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||  ||||||||| |||||||||    
T  38355821 cctggctaacgggccagccctgg 38355843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 330 - 475
Target Start/End: Original strand, 6955465 - 6955604
Alignment:
Q  330 actagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaac 429  Q
    ||||||||||||||||||||||| ||||||     || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || |    
T  6955465 actagagctgtcaaaacgggcggcccggcc-----gggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagc 6955559  T
Q  430 gcgagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
     |||||||||| ||||| ||||||||| ||||||||| | ||||||    
T  6955560 ccgagcccggccctata-gggctcccgggctaacgggccggccctg 6955604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 37205285 - 37205382
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||||||||||||||||||||||||||||| |||||| || |||||| | |||||| ||| ||||||||||||||| ||||||||| ||||||    
T  37205285 tttttagggccgggctaaaaagcccggtttaaatacgggctgaaataatagagcccgagcctggccctatacgggctcccgggctaacgggccagccc 37205382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 356 - 476
Target Start/End: Complemental strand, 9996650 - 9996530
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||| ||||||||||||||||||| ||||||||||| |||||  || | |||||||||| ||||||||||||||    
T  9996650 ggcccggccgggccaagggcttttaagggctgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctccc 9996551  T
Q  456 gagctaacgggtcagccctgg 476  Q
    | ||||||||| | |||||||    
T  9996550 gggctaacgggccggccctgg 9996530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 4695509 - 4695631
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctg-gaaaaatagaacgcgagcccggctctatacgggct 452  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||  ||||| ||  | |||||||||| |||||||||||    
T  4695509 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgctaaaaacag-gcccgagcccggccctatacgggct 4695607  T
Q  453 cccgagctaacgggtcagccctgg 476  Q
    |||| ||||||||| |||||||||    
T  4695608 cccgggctaacgggccagccctgg 4695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 333 - 473
Target Start/End: Original strand, 3435902 - 3436042
Alignment:
Q  333 agagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcg 432  Q
    |||||||||||||||||||  || ||||| |||| ||||||| |||| |||| ||| ||||||||||| |||| ||||||| ||||||||||||| | |     
T  3435902 agagctgtcaaaacgggcgccccagcccggccgggccaagggcttttaagggtcggactaaaaagcccagtttgaatatggactggaaaaatagagccca 3436001  T
Q  433 agcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||| |||| || |||||||||||  ||||||||| ||||||    
T  3436002 agcgcggccctttacgggctccctggctaacgggccagccc 3436042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 376 - 465
Target Start/End: Complemental strand, 75717 - 75628
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgg 465  Q
    |||||||||||||| ||||||||||  |||||||| ||||||||| ||| || | |||||||||| ||||||||||||||  ||||||||    
T  75717 tttttagggccgggttaaaaagccctatttaaataagggctggaataattgagcccgagcccggccctatacgggctcccaggctaacgg 75628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 354 - 423
Target Start/End: Complemental strand, 24477787 - 24477718
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaa 423  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  24477787 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaa 24477718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 376 - 452
Target Start/End: Original strand, 4970249 - 4970325
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    |||| ||||||||| |||||||||| ||||||||||| ||||||||| |||| | |||||||||| | |||||||||    
T  4970249 ttttgagggccgggttaaaaagcccagtttaaatatgagctggaaaattagagcccgagcccggcccaatacgggct 4970325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 35038471 - 35038563
Alignment:
Q  383 ggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
    |||||||||||||||  |||||| ||||||||||| |||||  || | |||||||| | ||||||||||||||| ||||||||| | ||||||    
T  35038471 ggccgggctaaaaagttcggtttgaatatgggctgcaaaaaatgagcccgagcccgaccctatacgggctcccgggctaacgggccggccctg 35038563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 464
Target Start/End: Original strand, 38975630 - 38975713
Alignment:
Q  382 gggccgggctaaaaagcccggttta-aatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacg 464  Q
    ||||||||| |||||||||||  |  ||||||| || |||||||||| | |||||||||| ||||||||||||| | |||||||    
T  38975630 gggccgggccaaaaagcccggggtgtaatatggactcgaaaaatagagcccgagcccggccctatacgggctcctgggctaacg 38975713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 27344710 - 27344739
Alignment:
Q  331 ctagagctgtcaaaacgggcggtccggccc 360  Q
    ||||||||||||||||||||||||||||||    
T  27344710 ctagagctgtcaaaacgggcggtccggccc 27344739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 38975565 - 38975593
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggccc 360  Q
    |||||||||||||||||||||||||||||    
T  38975565 tagagctgtcaaaacgggcggtccggccc 38975593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 3941095 - 3940951
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||| | |||| ||||||| |||| |||||||||||||||||||| |||| ||||||||||| |||||  || | |    
T  3941095 tagagctgtcaaaacgggcggcccggcctggccgggccaagggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagccc 3940996  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||||||| ||||||||| | |||||||    
T  3940995 gagcccggccctatacgggctcccgggctaacgggccggccctgg 3940951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 354 - 473
Target Start/End: Complemental strand, 15244719 - 15244600
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    ||||||||| ||||  | |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| | |||| ||||| |||||||||||     
T  15244719 ccggcccgaacggataatgggttttttagggccgggctaaaaagcccggtttaaatatgggctaaaaaaatagagcccgagtccggccctatacgggctt 15244620  T
Q  454 ccgagctaacgggtcagccc 473  Q
    ||| ||||||||| ||||||    
T  15244619 ccgggctaacgggccagccc 15244600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 30436051 - 30436174
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaata-gaacgcgagcccggctctatacgggct 452  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| | || | |||||||||| |||||||||||    
T  30436051 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggct 30436150  T
Q  453 cccgagctaacgggtcagccctgg 476  Q
    |||| ||||||||| |||||||||    
T  30436151 cccgggctaacgggccagccctgg 30436174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 35813019 - 35813141
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| |||||||||||||||||||| |||| ||||||||||| |||||  || | |||||||||| ||||||||||||    
T  35813019 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccagtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctc 35813118  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  35813119 ccgggctaacgggccagccctgg 35813141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 23221767 - 23221889
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| | || ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | ||||||| || ||||||||||||    
T  23221767 ccggcccggcggggccaagggcttttaagggccgggctaaaaagcccggtttcaatatgggctgcaaaaaatgagcccgagccccgccctatacgggctc 23221866  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| || ||||||    
T  23221867 ccgggctaacgggccatccctgg 23221889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 356 - 476
Target Start/End: Original strand, 3654013 - 3654133
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctccc 455  Q
    |||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | ||| |||||| |||||| |||||||    
T  3654013 ggcccggccgggccaagggattttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgatcccggccctatacaggctccc 3654112  T
Q  456 gagctaacgggtcagccctgg 476  Q
    | ||||||||| | |||||||    
T  3654113 gggctaacgggccggccctgg 3654133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 368 - 476
Target Start/End: Original strand, 42738559 - 42738660
Alignment:
Q  368 ccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggt 467  Q
    ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||        ||||| ||||||||||||||| |||||||||     
T  42738559 ccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgtaaaaataga-------gccggccctatacgggctcccgggctaacgggc 42738651  T
Q  468 cagccctgg 476  Q
    |||||||||    
T  42738652 cagccctgg 42738660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 331 - 452
Target Start/End: Original strand, 45450852 - 45450973
Alignment:
Q  331 ctagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacg 430  Q
    |||||||||||||||||||||| | ||||||  ||| | | |   ||||||||||||||||||||||||| |||| |||||||||||||| ||| || |     
T  45450852 ctagagctgtcaaaacgggcggccaggcccggtcgggcaacgaactttttagggccgggctaaaaagccctgtttgaatatgggctggaataatggagcc 45450951  T
Q  431 cgagcccggctctatacgggct 452  Q
    |||||| ||| |||||||||||    
T  45450952 cgagcctggccctatacgggct 45450973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 335 - 475
Target Start/End: Complemental strand, 28969082 - 28968942
Alignment:
Q  335 agctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgag 434  Q
    |||||||||||||||| | || | ||||||||   | | | |||| ||||||||||| |||||||  |||| ||||||||||||||||||||| | ||||    
T  28969082 agctgtcaaaacgggcagccccgaccgaccgggtaacgagcttttaagggccgggctgaaaagccttgtttgaatatgggctggaaaaatagagcccgag 28968983  T
Q  435 cccggctctatacgggctcccgagctaacgggtcagccctg 475  Q
    |||||| || |||||||| ||| ||||||| | ||||||||    
T  28968982 cccggccctgtacgggcttccgggctaacgagccagccctg 28968942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 376 - 466
Target Start/End: Complemental strand, 2350502 - 2350412
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacggg 466  Q
    ||||| || ||||||| ||||||||| ||||||||||||| |||| ||| || | |||||||||| |||||| |||||||| |||||||||    
T  2350502 tttttcggaccgggctgaaaagcccgatttaaatatgggcgggaataattgagcccgagcccggccctatacaggctcccgggctaacggg 2350412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 452
Target Start/End: Complemental strand, 9201802 - 9201726
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggct 452  Q
    ||||||||||||| || ||||| |||||||||||| |||||| || |||||| | ||||| |||| |||||||||||    
T  9201802 tttttagggccggactgaaaagtccggtttaaatacgggctgaaataatagagcccgagctcggccctatacgggct 9201726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 380 - 473
Target Start/End: Original strand, 14772688 - 14772775
Alignment:
Q  380 tagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||| ||||||||||| |||||||||||||||| ||| |||       ||||||| | ||||| ||||||||| ||||||||| ||||||    
T  14772688 tagggccgagctaaaaagcctggtttaaatatgggctagaataat------tgagcccgaccctatatgggctcccgggctaacgggccagccc 14772775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 476
Target Start/End: Complemental strand, 20143721 - 20143577
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||| |||||||||||||||| ||| |||||  || ||| ||| |||| |||||||||||||||||||| ||||||||||||||  |||||| ||| | |    
T  20143721 tagaactgtcaaaacgggcgggccgacccgaatgggccacgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagccc 20143622  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  20143621 gagcccggccctatacgggcttccgggctaacgggccagccctgg 20143577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 476
Target Start/End: Original strand, 22189118 - 22189262
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    |||| |||||||||||||||| ||| |||||  || ||| ||| |||| |||||||||||||||||||| ||||||||||||||  |||||| ||| | |    
T  22189118 tagaactgtcaaaacgggcgggccgacccgaatgggccacgggcttttgagggccgggctaaaaagcccagtttaaatatgggcctgaaaaagagagccc 22189217  T
Q  432 gagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    ||||||||| ||||||||||| ||| ||||||||| |||||||||    
T  22189218 gagcccggccctatacgggcttccgggctaacgggccagccctgg 22189262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 355 - 476
Target Start/End: Complemental strand, 15071210 - 15071089
Alignment:
Q  355 cggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcc 454  Q
    ||||| |||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| |||||||||||||    
T  15071210 cggccggaccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctatacgggctcc 15071111  T
Q  455 cgagctaacgggtcagccctgg 476  Q
    || ||||||||| | |||||||    
T  15071110 cgggctaacgggccggccctgg 15071089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 332 - 452
Target Start/End: Complemental strand, 10998166 - 10998046
Alignment:
Q  332 tagagctgtcaaaacgggcggtccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgc 431  Q
    ||||||||||||||||||||| |||||||  |||| ||||||| |||| ||||||||||||||||| ||||||| ||||||||||| |||||  || | |    
T  10998166 tagagctgtcaaaacgggcggcccggcccctccgggccaagggcttttaagggccgggctaaaaagtccggtttgaatatgggctgcaaaaaatgagccc 10998067  T
Q  432 gagcccggctctatacgggct 452  Q
    ||||||||| |||||||||||    
T  10998066 gagcccggccctatacgggct 10998046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 354 - 476
Target Start/End: Complemental strand, 26519975 - 26519853
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| |||||||||| ||||||||| |||| ||||||||||| ||||||||| | |||||||| | ||||||||| ||    
T  26519975 ccggcccggccgggccaagggcttttaagggccgggcgaaaaagcccagtttgaatatgggctgcaaaaatagagcccgagcccgaccctatacgggttc 26519876  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  26519875 ccgggctaacgggccagccctgg 26519853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 382 - 476
Target Start/End: Original strand, 31470975 - 31471069
Alignment:
Q  382 gggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccctgg 476  Q
    |||||||||||||||||||| ||| ||||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||||||| |||||||||    
T  31470975 gggccgggctaaaaagcccgatttgaatatgggctgcaaaaatagagcccgagcccggccctatacgggctcccgggctaacgggccagccctgg 31471069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 356 - 476
Target Start/End: Original strand, 11369241 - 11369362
Alignment:
Q  356 ggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaata-gaacgcgagcccggctctatacgggctcc 454  Q
    |||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| ||||| | || | |||||||||| |||||||||||||    
T  11369241 ggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaaatgagcccgagcccggccctatacgggctcc 11369340  T
Q  455 cgagctaacgggtcagccctgg 476  Q
    || ||||||||| | |||||||    
T  11369341 cgggctaacgggccggccctgg 11369362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 31654912 - 31655008
Alignment:
Q  378 tttagggccgggctaaaaagcccggtttaaa-tatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| ||| || | |||||||||| ||||||||||||||| ||||||||| ||||||    
T  31654912 tttagggccgggccaaaaagcccggtttaaaatatgggctggaataattgagcccgagcccggccctatacgggctcccgggctaacgggccagccc 31655008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 354 - 456
Target Start/End: Original strand, 12271413 - 12271515
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    ||||||| || || ||||||| |||| ||| ||||||||||||| ||||||| ||||||||||| ||||||||| | |||||||||| || |||||||||    
T  12271413 ccggcccaactgggccaagggcttttaaggaccgggctaaaaagtccggtttgaatatgggctgaaaaaatagagcccgagcccggccctttacgggctc 12271512  T
Q  454 ccg 456  Q
    |||    
T  12271513 ccg 12271515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 376 - 474
Target Start/End: Original strand, 17868454 - 17868552
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccct 474  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| |||||| |  ||| ||||  ||||||||||||||| ||||||||| |||||||    
T  17868454 tttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggctcccgggctaacgggccagccct 17868552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 376 - 473
Target Start/End: Original strand, 17878237 - 17878334
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggtcagccc 473  Q
    |||||||||||||||||||||||||  |||||||| ||||||||| |||||| |  ||| ||||  ||||||||||||||| ||||||||| ||||||    
T  17878237 tttttagggccgggctaaaaagccctatttaaatacgggctggaataatagagcctgagtccggtcctatacgggctcccgggctaacgggccagccc 17878334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 376 - 461
Target Start/End: Original strand, 27965833 - 27965918
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagcta 461  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| | |||| | ||||| |||| ||||| ||||||||| ||||    
T  27965833 ttttttgggccgggctaaaaagcccggtttaaatacgggctggaatattagagcccgagcacggccctatatgggctcccgggcta 27965918  T

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Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 436
Target Start/End: Original strand, 12075872 - 12075940
Alignment:
Q  368 ccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcc 436  Q
    ||||||| |||| |||| |||||||||||||||||||| |||||||||| |||||||||| | ||||||    
T  12075872 ccaagggcttttaagggtcgggctaaaaagcccggtttgaatatgggctagaaaaatagagcccgagcc 12075940  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 425
Target Start/End: Complemental strand, 3045073 - 3045024
Alignment:
Q  376 tttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaata 425  Q
    |||| ||||||||||| |||||| | |||| |||||||||||||||||||    
T  3045073 ttttaagggccgggctgaaaagctctgtttgaatatgggctggaaaaata 3045024  T

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Target: scaffold0564 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 354 - 476
Target Start/End: Original strand, 9817 - 9939
Alignment:
Q  354 ccggcccgaccggaccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctc 453  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||  || | |||||||||| || | |||||||    
T  9817 ccggcccggccgggccaagggcttttaagggccgggctaaaaagcccggtttgaatatgggctgcaaaaaatgagcccgagcccggccctcttcgggctc 9916  T
Q  454 ccgagctaacgggtcagccctgg 476  Q
    ||| ||||||||| |||||||||    
T  9917 ccgggctaacgggccagccctgg 9939  T

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Target: scaffold0219 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 368 - 473
Target Start/End: Original strand, 16431 - 16530
Alignment:
Q  368 ccaagggttttttagggccgggctaaaaagcccggtttaaatatgggctggaaaaatagaacgcgagcccggctctatacgggctcccgagctaacgggt 467  Q
    ||||||| |||| |||| |||||||||||||||||||| ||||||||||| |||||        ||||||||| ||||||||||||||| |||||||||     
T  16431 ccaagggcttttaagggtcgggctaaaaagcccggtttgaatatgggctgcaaaaa------atgagcccggccctatacgggctcccgggctaacgggc 16524  T

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