View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1740_low_90 (Length: 336)
Name: NF1740_low_90
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_90 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 10750742 - 10751046
Alignment:
| Q |
18 |
aaagtggtttgtttatttgtg--ttttcaattgtgaatgagggaggctttggatggattaggttttaaacaaaataaagatagggaattaaggtttacat |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10750742 |
aaagtggtttgtttatttgtgtgttttcaattgtgaatgagggaggctttggatggattaggttttaaacaaaataaagatagggaattaaggtttacat |
10750841 |
T |
|
| Q |
116 |
catgaaggatgggcctagttgaggcattttacacatttgtttaataaaatatattttgttttttatacaaacactttgggtgttcattaagggacatgag |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
10750842 |
catgaaggatgggcctagttgaggcattttacacatttgtttaataaaatatattttgttttttatacaaatagtttgggtgttcattaagggacatgag |
10750941 |
T |
|
| Q |
216 |
tagaactaacattattgttgcttctaatttgaagtctcatcatgcattagcattatatattgttttcattgtactatactctctttgattctcaatgcat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10750942 |
tagaactaacattattgttgcttctaatttgaagtctcatcatgcattagcattatatattgttttcattgtactatactctctttgattctcaatgcat |
10751041 |
T |
|
| Q |
316 |
ttctt |
320 |
Q |
| |
|
||||| |
|
|
| T |
10751042 |
ttctt |
10751046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University