View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1740_low_91 (Length: 333)

Name: NF1740_low_91
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1740_low_91
NF1740_low_91
[»] chr3 (27 HSPs)
chr3 (3-317)||(19604125-19604439)
chr3 (176-317)||(19654127-19654268)
chr3 (120-238)||(19549673-19549792)
chr3 (178-307)||(19594049-19594177)
chr3 (176-239)||(18478772-18478835)
chr3 (176-243)||(19581798-19581865)
chr3 (247-317)||(19626622-19626691)
chr3 (120-187)||(19626561-19626628)
chr3 (120-181)||(19539510-19539571)
chr3 (176-291)||(19557734-19557847)
chr3 (176-216)||(18478868-18478908)
chr3 (132-172)||(19581732-19581772)
chr3 (175-212)||(19617902-19617939)
chr3 (249-302)||(32150373-32150426)
chr3 (135-175)||(18478927-18478967)
chr3 (249-307)||(19581888-19581945)
chr3 (134-168)||(19654066-19654100)
chr3 (249-302)||(18478693-18478745)
chr3 (120-168)||(19557662-19557710)
chr3 (267-307)||(19564004-19564044)
chr3 (121-161)||(19594014-19594054)
chr3 (116-168)||(32150527-32150578)
chr3 (244-307)||(19539654-19539716)
chr3 (181-212)||(19610133-19610164)
chr3 (176-207)||(32150477-32150508)
chr3 (176-218)||(19539582-19539624)
chr3 (252-312)||(19610180-19610240)
[»] chr6 (1 HSPs)
chr6 (176-276)||(18025651-18025747)
[»] chr7 (3 HSPs)
chr7 (144-181)||(21586573-21586610)
chr7 (175-203)||(21586486-21586514)
chr7 (176-212)||(21605634-21605670)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 19604125 - 19604439
Alignment:
Q  3 aggaccaacaccagttttgagtcagtgcatttggcctgggatgtgtcttggcccagctatttgcgacgcaaggtgcaagttgctgctacgtccaggagga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  19604125 aggaccaacaccagttttgagtcagtgcatttggcctgggatgtgtcttggccctgctatttgcgacgcaaggtgcaagtttctgctacgtccaggagga 19604224  T
Q  103 cgatgccttggatttgtttgttgttgtacgtaatgaaataaattacattattataaatatttatatctattttactaaataagaaacatcttcctccaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19604225 cgatgccttggatttgtttgttgttgtacgtaatgaaataaattacattattataaatatttatatctattttactaaataagaaacatcttcctccaaa 19604324  T
Q  203 gcttttatttatatatgtttgaagcatatatatcaagtatgggtataagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  19604325 gcttttatttatatatgtttgaagcatatatatcaagtatgggtataagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaagaaag 19604424  T
Q  303 taagaaagagcatat 317  Q
    |||||||||||||||    
T  19604425 taagaaagagcatat 19604439  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 19654127 - 19654268
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatgggtataagaataagtgaagaacttgaaagtag 275  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  19654127 actaaataagaaacatctttctccaaagcttttatttatatatgtttgaagcatatatatcaaatatgggcataagaataagtgaagaacttgaaagtag 19654226  T
Q  276 tgtggccaagctcaatgtgaaataaagtaagaaagagcatat 317  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  19654227 tgtggccaagctcaatgtgaaagaaagcaagaaagagcatat 19654268  T

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Target: chr3; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 19549673 - 19549792
Alignment:
Q  120 ttgttgttgtacgtaatgaaataaattacattattataaatatttatatctattttactaaataagaaacatcttcctccaaagcttttatttatatatg 219  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19549673 ttgttgctgtatgtaatgaaataaattacattattataaatatttatatctattttactaaataagaaacatcttcctccaaagcttttatttatatatg 19549772  T
Q  220 -tttgaagcatatatatcaa 238  Q
     |||||||||||||||||||    
T  19549773 ttttgaagcatatatatcaa 19549792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 178 - 307
Target Start/End: Original strand, 19594049 - 19594177
Alignment:
Q  178 taaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatgggtataagaataagtgaagaacttgaaagtagtg 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| |||||||||||||| ||    
T  19594049 taaataagaaacatcttcctccaaagcttttatttatatatgtttgaagaatatatatcaagtattggcataagaataagtggagaacttgaaagta-tg 19594147  T
Q  278 tggccaagctcaatgtgaaataaagtaaga 307  Q
    ||||||||||||||||||||||||| ||||    
T  19594148 tggccaagctcaatgtgaaataaagaaaga 19594177  T

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Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 18478835 - 18478772
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaag 239  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  18478835 actaaataagaaacattttcctccaaagcttttatttatatatgtttgaagcatatatatcaag 18478772  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 19581798 - 19581865
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatg 243  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  19581798 actaaataagaaacattttcctccaaagcttttatttatatatgtttgaagtatatatatcaagtatg 19581865  T

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Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 247 - 317
Target Start/End: Original strand, 19626622 - 19626691
Alignment:
Q  247 ataagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaagtaagaaagagcatat 317  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  19626622 ataagaataagtggagaacttgaaagta-tgtggccaagctcaatgtgaaataaagcaagaaagagcatat 19626691  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 19626561 - 19626628
Alignment:
Q  120 ttgttgttgtacgtaatgaaataaattacattattataaatatttatatctattttactaaataagaa 187  Q
    |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19626561 ttgttgctgtatgtcatgaaataaattacattattataaatatttatatctattttaataaataagaa 19626628  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 19539510 - 19539571
Alignment:
Q  120 ttgttgttgtacgtaatgaaataaattacattattataaatatttatatctattttactaaa 181  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19539510 ttgttgctgtatgtaatgaaataaattacattattataaatatttatatatattttactaaa 19539571  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 291
Target Start/End: Original strand, 19557734 - 19557847
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatgggtataagaataagtgaagaacttgaaagtag 275  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    | | |  | | ||||||||||| |||| |||||||||     
T  19557734 actaaataagaaacatcttcctccaaagttttta-ttatatatgtttgaagcatatattgtgattctcagcagaagaataagtggagaaattgaaagta- 19557831  T
Q  276 tgtggccaagctcaat 291  Q
    ||||||||||||||||    
T  19557832 tgtggccaagctcaat 19557847  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 18478908 - 18478868
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatat 216  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18478908 actaaataagaaacatcttcctccaaagcttttatttatat 18478868  T

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Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 19581732 - 19581772
Alignment:
Q  132 gtaatgaaataaattacattattataaatatttatatctat 172  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19581732 gtaatgaaataaattacattattataaatatttatatctat 19581772  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 19617902 - 19617939
Alignment:
Q  175 tactaaataagaaacatcttcctccaaagcttttattt 212  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19617902 tactaaataagaaacatcttcctccaaagcttttattt 19617939  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 32150426 - 32150373
Alignment:
Q  249 aagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaag 302  Q
    ||||||||||| |||||||||| ||||| |||||||||||||||||||| ||||    
T  32150426 aagaataagtggagaacttgaatgtagtctggccaagctcaatgtgaaagaaag 32150373  T

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Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 18478967 - 18478927
Alignment:
Q  135 atgaaataaattacattattataaatatttatatctatttt 175  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18478967 atgaaataaattacattattataaatatttatatatatttt 18478927  T

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Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 307
Target Start/End: Original strand, 19581888 - 19581945
Alignment:
Q  249 aagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaagtaaga 307  Q
    |||||||| || |||||||||||||| |||||||||||||||| |||||||||| ||||    
T  19581888 aagaataaatggagaacttgaaagta-tgtggccaagctcaatatgaaataaagaaaga 19581945  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 19654066 - 19654100
Alignment:
Q  134 aatgaaataaattacattattataaatatttatat 168  Q
    |||||||||||||||||||||||||||||||||||    
T  19654066 aatgaaataaattacattattataaatatttatat 19654100  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 18478745 - 18478693
Alignment:
Q  249 aagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaag 302  Q
    |||||||| || |||||||||||||| |||||||||||||||| ||||||||||    
T  18478745 aagaataaatggagaacttgaaagta-tgtggccaagctcaatatgaaataaag 18478693  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 19557662 - 19557710
Alignment:
Q  120 ttgttgttgtacgtaatgaaataaattacattattataaatatttatat 168  Q
    |||||||||| |  ||||||||||||||||| |||||||||||||||||    
T  19557662 ttgttgttgtgctaaatgaaataaattacatgattataaatatttatat 19557710  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 19564004 - 19564044
Alignment:
Q  267 tgaaagtagtgtggccaagctcaatgtgaaataaagtaaga 307  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  19564004 tgaaagtagtgtggccaagctcaatatgaaataaagaaaga 19564044  T

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Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 19594014 - 19594054
Alignment:
Q  121 tgttgttgtacgtaatgaaataaattacattattataaata 161  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  19594014 tgttgttgtgtgtaatgaaataaattacattattataaata 19594054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 32150578 - 32150527
Alignment:
Q  116 ttgtttgttgttgtacgtaatgaaataaattacattattataaatatttatat 168  Q
    |||||||||| |||  |||||||||||||| ||||||||||||||||||||||    
T  32150578 ttgtttgttgctgtgagtaatgaaataaat-acattattataaatatttatat 32150527  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 19539654 - 19539716
Alignment:
Q  244 ggtataagaataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaagtaaga 307  Q
    |||| |||||||| || ||||||||||| || |||||||||||||||| |||||||||| ||||    
T  19539654 ggtagaagaataaatggagaacttgaaatta-tgtggccaagctcaatatgaaataaagaaaga 19539716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 212
Target Start/End: Original strand, 19610133 - 19610164
Alignment:
Q  181 ataagaaacatcttcctccaaagcttttattt 212  Q
    ||||||||||||||||||||||||||||||||    
T  19610133 ataagaaacatcttcctccaaagcttttattt 19610164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 176 - 207
Target Start/End: Complemental strand, 32150508 - 32150477
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttt 207  Q
    ||||||||||||||||||||||||||||||||    
T  32150508 actaaataagaaacatcttcctccaaagcttt 32150477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 19539582 - 19539624
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatat 218  Q
    ||||||||||||||||||  |||||||||||| ||||||||||    
T  19539582 actaaataagaaacatctctctccaaagctttgatttatatat 19539624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 19610180 - 19610240
Alignment:
Q  252 aataagtgaagaacttgaaagtagtgtggccaagctcaatgtgaaataaagtaagaaagag 312  Q
    |||| ||| |||||| ||||||||||| |||||||||||| ||||| |||  |||||||||    
T  19610180 aatatgtggagaactcgaaagtagtgtagccaagctcaatatgaaacaaacaaagaaagag 19610240  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 18025651 - 18025747
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttatttatatatgtttgaagcatatatatcaagtatgggtata-agaataagtgaagaacttgaaagta 274  Q
    |||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||  |  | || ||||||| ||||||||||||||    
T  18025651 actaaataagaaacatcttcctccaaa-----tatttatatatgtttgaagcatatatatcaagtatgtattcagagcataagtggagaacttgaaagta 18025745  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 21586610 - 21586573
Alignment:
Q  144 attacattattataaatatttatatctattttactaaa 181  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  21586610 attacattattataaatatttatatatgttttactaaa 21586573  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 203
Target Start/End: Complemental strand, 21586514 - 21586486
Alignment:
Q  175 tactaaataagaaacatcttcctccaaag 203  Q
    |||||||||||||||||||||||||||||    
T  21586514 tactaaataagaaacatcttcctccaaag 21586486  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 21605634 - 21605670
Alignment:
Q  176 actaaataagaaacatcttcctccaaagcttttattt 212  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  21605634 actaaataaaaaacatcttcctccgaagcttttattt 21605670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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