View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_93 (Length: 328)
Name: NF1740_low_93
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 15 - 317
Target Start/End: Complemental strand, 44806538 - 44806236
Alignment:
| Q |
15 |
ccaagagcctccaaccagaacccgaacaccggtttctgagattttcagatcatctactaaaatgaagtttagtctcttgtcttcagcttcatattggtta |
114 |
Q |
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| T |
44806538 |
ccaagagcctccaaccagaacccgaacaccggtttctgagattttcagatcatctactaaaatgaagtttagtctcttgtcttcagcttcatattggtta |
44806439 |
T |
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| Q |
115 |
agccaaatcaagctctctgaaaatgttgaaaagcacaacatttcacttggattcttcaaactagccttggaggcaggatgtgaggtaaaacacacaccaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44806438 |
agccaaatcaagctctctgaaaatgttgaaaagcacaacatttcacttggattcttcaaactagccttggaggcaggatgtgaggtaaaacacacaccaa |
44806339 |
T |
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| Q |
215 |
tcaattcattcctgtttatttcaattttgtaannnnnnncttttcaacaatgtacctactaagcaagttttaaaattttgactgtgttgtgattttttat |
314 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44806338 |
tcaattcattcctgtttatttcaattttgtaatttttttcttttcaacaatgtacctactaagcaagttttaaaattttgactgtgttgtgattttttat |
44806239 |
T |
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| Q |
315 |
att |
317 |
Q |
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||| |
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| T |
44806238 |
att |
44806236 |
T |
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