View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1740_low_98 (Length: 315)
Name: NF1740_low_98
Description: NF1740
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1740_low_98 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 45390265 - 45390524
Alignment:
| Q |
12 |
tcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacgaaaagaacacttacaatattttccttaatacatg |
111 |
Q |
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| T |
45390265 |
tcatcaagttaaattgagctcatctatacataaaagagtactgtattttagtaacatctatacacaaaaagaacacttaaaatattttccttaatacatg |
45390364 |
T |
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| Q |
112 |
taaaaaatgacaaaagatgtttgtataggtcctgtctttaaaaacagacgtaggtggtcgcttattgttttaatgacaacaaaattttaattacaaagtg |
211 |
Q |
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| T |
45390365 |
taaaaaatgacaaaagatgtttgtataggtcctgtctttaaaaacagacgtaggtggtcgcttattgttttaatgacaacaaaattttaat--------- |
45390455 |
T |
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| Q |
212 |
atcttatgctactaatataaagtattttcttgagtatgtgttacaaataataggatataatatgaagcaagtgatgac |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45390456 |
---------tactaatataaagtattttcttgagtatgtgttacaaataataggatataatatcaagcaagtgatgac |
45390524 |
T |
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