View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1741-Insertion-4 (Length: 795)

Name: NF1741-Insertion-4
Description: NF1741
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1741-Insertion-4
NF1741-Insertion-4
[»] chr8 (3 HSPs)
chr8 (7-787)||(41786399-41787179)
chr8 (670-717)||(5870396-5870443)
chr8 (670-724)||(40151580-40151634)
[»] chr3 (3 HSPs)
chr3 (673-724)||(10020172-10020223)
chr3 (670-714)||(32930742-32930787)
chr3 (662-714)||(31264811-31264862)
[»] chr4 (3 HSPs)
chr4 (657-725)||(13668830-13668898)
chr4 (657-725)||(13681687-13681755)
chr4 (654-724)||(9694389-9694458)
[»] chr7 (1 HSPs)
chr7 (662-721)||(7192763-7192822)
[»] chr2 (6 HSPs)
chr2 (654-724)||(17229213-17229283)
chr2 (673-718)||(31053450-31053495)
chr2 (687-727)||(31203167-31203207)
chr2 (657-724)||(13365883-13365950)
chr2 (650-744)||(2336649-2336743)
chr2 (695-724)||(5788863-5788892)
[»] chr6 (1 HSPs)
chr6 (673-724)||(20117199-20117250)
[»] chr5 (1 HSPs)
chr5 (678-725)||(19910580-19910627)
[»] chr1 (1 HSPs)
chr1 (635-697)||(47493820-47493882)
[»] scaffold0159 (1 HSPs)
scaffold0159 (695-724)||(33236-33265)
[»] scaffold0036 (1 HSPs)
scaffold0036 (680-725)||(49428-49473)


Alignment Details
Target: chr8 (Bit Score: 670; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 7 - 787
Target Start/End: Original strand, 41786399 - 41787179
Alignment:
Q  7 aatacaaacacctgcaatgcaagcaagactcaagagccactctttatgccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttcca 106  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786399 aatacaaacacctgcaacgcaagcaagactcaagagccactctttat-ccttttacacattcgttaaatccaaatctgcaaaacagttttaatatttcca 41786497  T
Q  107 aataatggtttatagaatagaatagtaatacttacaactaaagtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttctttt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786498 aataatggtttatagaatagaatagtaatacttacaactaaagtgatgtttgtatcctgactctcatcctcatcaattgatattttcaaatatttctttt 41786597  T
Q  207 atttaatgtaactcttcgaaatttaacatattagtgacattgtgagaaaatagagtgtggaagagacactgtgatatgctttagaattttcccttaa-tt 305  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  41786598 atgtaatgtaactcttcgaaatttaacatattagtgacattgtgagaaaatagagtgtggaagatacactgtgatatgctttagaattttcccttaattt 41786697  T
Q  306 aatagttgagaaaagagttatttcgacaatctaaaacttgtctaatacggtannnnnnnnatacagttgtcaatttactaacaatttgttcctctcttct 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  41786698 aatagttgagaaaagagttatttcgacaatctaaaacttgtctaatacggtattttttttatacagttgtcaatttactaacaatttgttcctctcttct 41786797  T
Q  406 ttaatcaaactaacacatactttaggtgtatataaaaaattattatatgttttcgttgttcaaatatcactcatctgaatagttatcatactttaggtgt 505  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786798 ttaatcaaactaacacatactttaggtgtatataaaaaattgttatatgctttcgttgttcaaatatcactcatctgaatagttatcatactttaggtgt 41786897  T
Q  506 aattagtgtttctnnnnnnnnttgtatatgtaattagtgataaataaggatttgatacaatacttaatgtctccttaaataactcgttgtaattagggag 605  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41786898 aattagtgtttctaaaaaaaattgtatatgtaattagtgataaataaggatttgatacaatacttaatgtcttcttaaataactcgttgtaattagggag 41786997  T
Q  606 tcgacaggatcatcctctattggagaaatagcaattatataagcgagttgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatc 705  Q
    |||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||  |||||| |||||||||||||||||||    
T  41786998 tcgacaagatcatcctctattggagaaataacaattatataagcaagttgaacactacatcttgactcaaaaatttaagacattgagtttatgagtcatc 41787097  T
Q  706 tcacttatatgttgttcaatcttcactttactaatcaatcaatatgacattactaactcatctcacgcttgccacaacacaa 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787098 tcacttatatgttgttcaatcttcactttactaatcaatcaatatgacattactaactcatctcacgcttgccacaacacaa 41787179  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 670 - 717
Target Start/End: Complemental strand, 5870443 - 5870396
Alignment:
Q  670 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgt 717  Q
    ||||||||| ||||||||||||||||||| ||  ||||||||||||||    
T  5870443 actcaaaattttaagatattgagtttatgggttctctcacttatatgt 5870396  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 670 - 724
Target Start/End: Original strand, 40151580 - 40151634
Alignment:
Q  670 actcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||||  ||||||||||||||  |||| |||| |||||||||||||||||||    
T  40151580 actcaaaacattaagatattgagtaaatgaatcatttcacttatatgttgttcaa 40151634  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 673 - 724
Target Start/End: Complemental strand, 10020223 - 10020172
Alignment:
Q  673 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  10020223 caaaatcttaagatattaagtatatgagtcatctcacttatatgttgttcaa 10020172  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 670 - 714
Target Start/End: Complemental strand, 32930787 - 32930742
Alignment:
Q  670 actcaaaatct-taagatattgagtttatgagtcatctcacttata 714  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||    
T  32930787 actcaaaatctctaagacattgagtttatgagtcatctcacttata 32930742  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 714
Target Start/End: Complemental strand, 31264862 - 31264811
Alignment:
Q  662 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttata 714  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||    
T  31264862 acatctttactaaaaatcttaa-atattgagtttatgagtcatctcatttata 31264811  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 725
Target Start/End: Original strand, 13668830 - 13668898
Alignment:
Q  657 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 725  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13668830 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13668898  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 657 - 725
Target Start/End: Original strand, 13681687 - 13681755
Alignment:
Q  657 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 725  Q
    ||||||| |||  ||||||||| ||||||  |||||| ||| |||||||||||||||||||||||||||    
T  13681687 acactacgtctaaactcaaaatattaagactttgagtatattagtcatctcacttatatgttgttcaat 13681755  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 654 - 724
Target Start/End: Original strand, 9694389 - 9694458
Alignment:
Q  654 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||| |||| || |||||||||||||||| |||  | ||||||||||||||||||||| | |||||||    
T  9694389 tgaacaccacattttaactcaaaatcttaagacattt-gattatgagtcatctcacttataagatgttcaa 9694458  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 662 - 721
Target Start/End: Complemental strand, 7192822 - 7192763
Alignment:
Q  662 acatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgtt 721  Q
    ||||||| |||||||| ||||||| ||||||||||||| | || ||||||||||||||||    
T  7192822 acatctttactcaaaaccttaagacattgagtttatgatttatttcacttatatgttgtt 7192763  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 724
Target Start/End: Original strand, 17229213 - 17229283
Alignment:
Q  654 tgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||| ||||||| | | |||| |||||| ||| ||||||||| ||||| |||||||||||||||||||    
T  17229213 tgaacaccacatcttaatttaaaaccttaaggtatcgagtttatgggtcatttcacttatatgttgttcaa 17229283  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 673 - 718
Target Start/End: Complemental strand, 31053495 - 31053450
Alignment:
Q  673 caaaatcttaagatattgagtttatgagtcatctcacttatatgtt 718  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||    
T  31053495 caaaaccttgagatattgagtttatgggtcatctcacttatatgtt 31053450  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 31203167 - 31203207
Alignment:
Q  687 attgagtttatgagtcatctcacttatatgttgttcaatct 727  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  31203167 attgagtttatgagtcatctctcttataagttgttcaatct 31203207  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 657 - 724
Target Start/End: Complemental strand, 13365950 - 13365883
Alignment:
Q  657 acactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    |||| |||||||||| ||||| |||||   ||||||||||||  |||||||| |||||||||||||||    
T  13365950 acaccacatcttgacacaaaaccttaatgcattgagtttatggatcatctcatttatatgttgttcaa 13365883  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 650 - 744
Target Start/End: Complemental strand, 2336743 - 2336649
Alignment:
Q  650 gagttgaacactacatcttgactcaaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaatcttcactttactaatcaat 744  Q
    |||||| |||| ||||||| || ||||||||||||  ||||| |||||| ||| |||||||||||   ||||||| || |||||| |||| ||||    
T  2336743 gagttggacaccacatcttaacccaaaatcttaaggcattgaatttatgggtcctctcacttataaagtgttcaacctccacttttctaagcaat 2336649  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 5788863 - 5788892
Alignment:
Q  695 tatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||||||||||||||||||||||||||    
T  5788863 tatgagtcatctcacttatatgttgttcaa 5788892  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 673 - 724
Target Start/End: Complemental strand, 20117250 - 20117199
Alignment:
Q  673 caaaatcttaagatattgagtttatgagtcatctcacttatatgttgttcaa 724  Q
    ||||| ||||||| ||||| |||||||||  |||||||||||||||||||||    
T  20117250 caaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaa 20117199  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 725
Target Start/End: Original strand, 19910580 - 19910627
Alignment:
Q  678 tcttaagatattgagtttatgagtcatctcacttatatgttgttcaat 725  Q
    ||||||| |||| ||| ||||| |||||||||||||||||||||||||    
T  19910580 tcttaaggtattaagtatatgactcatctcacttatatgttgttcaat 19910627  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 635 - 697
Target Start/End: Complemental strand, 47493882 - 47493820
Alignment:
Q  635 agcaattatataagcgagttgaacactacatcttgactcaaaatcttaagatattgagtttat 697  Q
    |||||||||||||| |||||| ||   | ||||| ||||||||| ||||||||||||||||||    
T  47493882 agcaattatataagtgagttggacgtaatatcttaactcaaaattttaagatattgagtttat 47493820  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 724
Target Start/End: Original strand, 33236 - 33265
Alignment:
Q  695 tatgagtcatctcacttatatgttgttcaa 724  Q
    ||||||||||||||||||||||||||||||    
T  33236 tatgagtcatctcacttatatgttgttcaa 33265  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 680 - 725
Target Start/End: Original strand, 49428 - 49473
Alignment:
Q  680 ttaagatattgagtttatgagtcatctcacttatatgttgttcaat 725  Q
    |||||| ||||||| ||| ||||||||||||||||||||| |||||    
T  49428 ttaagacattgagtatattagtcatctcacttatatgttgctcaat 49473  T

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