View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17410_high_1 (Length: 503)

Name: NF17410_high_1
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17410_high_1
NF17410_high_1
[»] chr5 (1 HSPs)
chr5 (60-212)||(28800888-28801040)
[»] chr2 (1 HSPs)
chr2 (37-168)||(21019035-21019166)
[»] scaffold0596 (1 HSPs)
scaffold0596 (151-224)||(2926-2999)
[»] chr4 (2 HSPs)
chr4 (18-58)||(2516808-2516848)
chr4 (111-153)||(13854432-13854474)
[»] chr6 (1 HSPs)
chr6 (116-213)||(7859323-7859420)
[»] chr8 (1 HSPs)
chr8 (40-228)||(4282174-4282363)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 28800888 - 28801040
Alignment:
Q  60 ttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatattaaagttctttcgtggtattgg 159  Q
    ||||| ||| |||||| || |||||||  || | ||| ||||||||||||  |||||||| ||||||||||||||||| || |||||  | |||||||||    
T  28800888 ttgggttatttggaagagacggaatgaggttatcttttataatggtgtggttgaggtagaggatttggtggagaatatcaaggttctagcttggtattgg 28800987  T
Q  160 agtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaa 212  Q
    ||||||||   | | ||||||||||| |||| ||||||  | |||||||||||    
T  28800988 agtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaa 28801040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 21019035 - 21019166
Alignment:
Q  37 cggttgatttggaatgcttcaacttgggctatat-ggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaat 135  Q
    |||||||||||||||||  |   ||||||||| | ||||| |||||||||| ||||| || |||| |||||| | |||  |||||||||||||||| |||    
T  21019035 cggttgatttggaatgcgacggtttgggctattttggaagagaaggaatgatattgtgttcaata-tggtgttgtcgacttagatgatttggtggaaaat 21019133  T
Q  136 attaaagttctttcgtggtattggagtatgagt 168  Q
    ||||||||||| || |||||||||||| |||||    
T  21019134 attaaagttctatcatggtattggagtttgagt 21019166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 2999 - 2926
Alignment:
Q  151 tggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatg 224  Q
    |||| ||||||||||||| | |||||||| |||||||||| || |||||||| ||||||||| |||| ||||||    
T  2999 tggttttggagtatgagtcggttgaaaattgcatcgtgtttgttttacaagtagtgttggaacccacaggaatg 2926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2516848 - 2516808
Alignment:
Q  18 gaagactaagaatggttttcggttgatttggaatgcttcaa 58  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  2516848 gaagactaaaaatggttttcggttgatttggaatgcttcaa 2516808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 13854432 - 13854474
Alignment:
Q  111 cgaggtagatgatttggtggagaatattaaagttctttcgtgg 153  Q
    |||||||||||||||||||||||| ||||||||| | ||||||    
T  13854432 cgaggtagatgatttggtggagaagattaaagttttgtcgtgg 13854474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 7859323 - 7859420
Alignment:
Q  116 tagatgatttggtggagaatattaaagttctttcgtggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaat 213  Q
    |||| ||||||||||||||||| || |||||| | ||||||||||||||||||    ||| ||||||  |||||| ||||||  ||||||||| ||||    
T  7859323 tagaggatttggtggagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaat 7859420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 4282174 - 4282363
Alignment:
Q  40 ttgatttggaatgcttcaacttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatatta 139  Q
    |||||||||  |||||| | ||||| ||| |||||| |||| |||||  || | |||||||||||||| |  ||| | || ||| |||| |||||||| |    
T  4282174 ttgatttggcttgcttctatttgggttatttggaagagaagaaatgaggttatctttaataatggtgttgtagagatggaggatgtggtcgagaatataa 4282273  T
Q  140 aagttctttcgtggtattggagtatgagt-tgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatgttta 228  Q
    | |||||  | ||||||||||||||||||  | |  ||||||||  | |||| ||||||  ||||||||||||| || ||||| ||||||    
T  4282274 aggttctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgttta 4282363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University