View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17410_low_2 (Length: 333)
Name: NF17410_low_2
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17410_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 3600136 - 3599821
Alignment:
| Q |
1 |
atttacaggtttgctagtcttaaaacataatcaattttaagccatggtctcaaaacatagcannnnnnnnnnnnnnnnnnnacaaacaaaattcttgcat |
100 |
Q |
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| T |
3600136 |
atttacaggtttgctagtcttaaaacataatcaattttaagccatggtctcgaaacatagcaatttttatttttattttttacaaacaaaattcttccat |
3600037 |
T |
|
| Q |
101 |
aggttttggtaaagttcagttgaacgaggaaacaggatcgtaatacacatttaatagtgcaatgaaaattgtatatgttaagagaatnnnnnnnnttatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3600036 |
aggttttggtaaagttcagttgaacgaggaaacaggatcataatacacatttaatagtgcaatgaaaattgtatatgttaagagaataaaaaaaattatc |
3599937 |
T |
|
| Q |
201 |
aacaaaaaaggaacgccaannnnnnngacaaaacaaaagggaataacatttttgtccgtaaaaagggcttaaatttttatttaaatatatgagataagtc |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3599936 |
aacaaaaaaggaacgccaatttttttgacaaaacaaaagggaataacatttttgtcagtaaaaagggcttaaatttttatttaaatatatgagataagtc |
3599837 |
T |
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| Q |
301 |
aatgacaagagctctg |
316 |
Q |
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|||||||||||||||| |
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| T |
3599836 |
aatgacaagagctctg |
3599821 |
T |
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