View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17410_low_3 (Length: 292)
Name: NF17410_low_3
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17410_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 30895597 - 30895737
Alignment:
| Q |
1 |
ctgataaaccatatagtagtgtaaagattattgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagcc |
98 |
Q |
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| T |
30895597 |
ctgataaaccatatagtagtgtaaagattattgtacaataacaaatgctgttgaaataccatcttctaaccatgaatgtccgtttatttatttacaagtc |
30895696 |
T |
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| Q |
99 |
aatcattgctaattccagcatatatatactcacaaaataat |
139 |
Q |
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| T |
30895697 |
aatcattgttaattccagcatatatatactcgcaaaataat |
30895737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 30716675 - 30716429
Alignment:
| Q |
17 |
tagtgtaaagattattgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattcc |
114 |
Q |
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| T |
30716675 |
tagtgtaaagattattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaaaccaatcactgctaattcc |
30716576 |
T |
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| Q |
115 |
agcatatata-tactcacaaaataatattttcatgcatggtaagtagtaattcaattctatgccaaaattagtctatatactacaaaactacttccctac |
213 |
Q |
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| T |
30716575 |
a-catatatactactagctaaataatattttcatgcatggta---agttattcaattctatgccaaaatgagtctata---tacaaaacaacttccctac |
30716483 |
T |
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| Q |
214 |
taagtgaataaagctcgatgt---aaacacaatttctaaatctatcggtcataat |
265 |
Q |
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| T |
30716482 |
taattaaataaagctctatgtgtaaaacacaa-ttctgaatctatcagtcataat |
30716429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 28119235 - 28118990
Alignment:
| Q |
17 |
tagtgtaaagattattgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaagccaatcattgctaattcc |
114 |
Q |
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| T |
28119235 |
tagtgtaaagattattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcaagtttatttattcacaaaccaatcactgctaattcc |
28119136 |
T |
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| Q |
115 |
agcatatata-tactcacaaaataatattttcatgcatggtaagtagtaattcaattctatgccaaaattagtctatatactacaaaactacttccctac |
213 |
Q |
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| T |
28119135 |
agcatatatactactagctagataatattttcatgcatggta---agttattcaattctatgccaaaatgagtctata---tacaaaacaacttccctac |
28119042 |
T |
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| Q |
214 |
taagtgaataaagctcgatgt-aaacacaatttctaaatctatcggtcataat |
265 |
Q |
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| T |
28119041 |
taattaaataaagctctgtgtaaaacacaa-ttctgaacctatcagtcataat |
28118990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 971233 - 971313
Alignment:
| Q |
17 |
tagtgtaaagattattgtacaa--acaaatgctgttgaaataccatcttctatccatgaatgtcagtttatttatttacaa |
95 |
Q |
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|||||||||||||||||||||| |||||| || |||||||||||||||||| | ||||||| ||||||||||| |||| |
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| T |
971233 |
tagtgtaaagattattgtacaataacaaatcctattgaaataccatcttctaacaatgaatgcacgtttatttattcacaa |
971313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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