View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17410_low_5 (Length: 238)
Name: NF17410_low_5
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17410_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 3289759 - 3289550
Alignment:
| Q |
12 |
aagaaaatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaagnnnnnnngtcagatactagtctaaagtgttatataaatagtctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3289759 |
aagaaaatacctaactacatctcacaacactctaagaaaagagcgcaagagaaaagaaaaaa-gtcagatactagtctaaagtgttatataaatagtctt |
3289661 |
T |
|
| Q |
112 |
ggtctccttcttccttaaaaattataagaaatgtgggacttctccaacatgtatgttttcaagcaacaacaaacaatttgaactacctcaactacgttaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3289660 |
ggtctccttcttccttaaaaattataagaaatgtgggacttctccaacatgtatgttttcaagcaacaacaaacaatttgaactacctcaactacgttaa |
3289561 |
T |
|
| Q |
212 |
tcactgaattt |
222 |
Q |
| |
|
||||| ||||| |
|
|
| T |
3289560 |
tcactcaattt |
3289550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1605260 - 1605302
Alignment:
| Q |
12 |
aagaaaatacctaactacatctcacaacactctaagaaaagag |
54 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
1605260 |
aagaaaatacctaactacatctcataacactctaagacaagag |
1605302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 18779993 - 18780034
Alignment:
| Q |
12 |
aagaaaatacctaactacatctcacaacactctaagaaaaga |
53 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
18779993 |
aagaaaatatctaactacatctcacaacactctaagacaaga |
18780034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 25078342 - 25078304
Alignment:
| Q |
16 |
aaatacctaactacatctcacaacactctaagaaaagag |
54 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
25078342 |
aaatacctaattacatctcacaacactctaagacaagag |
25078304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 14437224 - 14437262
Alignment:
| Q |
16 |
aaatacctaactacatctcacaacactctaagaaaagag |
54 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
14437224 |
aaatacctaactacatctcacaacactttaagacaagag |
14437262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University