View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17410_low_6 (Length: 235)

Name: NF17410_low_6
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17410_low_6
NF17410_low_6
[»] chr3 (4 HSPs)
chr3 (81-216)||(30187372-30187506)
chr3 (91-212)||(646279-646399)
chr3 (81-208)||(14092523-14092650)
chr3 (89-134)||(9167017-9167062)
[»] chr2 (7 HSPs)
chr2 (81-209)||(33035106-33035234)
chr2 (142-216)||(14833341-14833415)
chr2 (85-200)||(42052713-42052828)
chr2 (85-200)||(11973444-11973559)
chr2 (105-200)||(23249908-23250003)
chr2 (85-189)||(32626991-32627095)
chr2 (90-167)||(39606464-39606541)
[»] chr4 (6 HSPs)
chr4 (81-208)||(10358860-10358987)
chr4 (85-190)||(5475295-5475400)
chr4 (81-149)||(20188460-20188528)
chr4 (85-185)||(29001595-29001694)
chr4 (85-200)||(19145499-19145616)
chr4 (88-197)||(51073135-51073244)
[»] scaffold1951 (1 HSPs)
scaffold1951 (81-216)||(583-716)
[»] chr7 (8 HSPs)
chr7 (97-214)||(9600356-9600473)
chr7 (97-214)||(9827927-9828044)
chr7 (90-188)||(13451226-13451324)
chr7 (85-200)||(42266157-42266272)
chr7 (85-178)||(19314909-19315002)
chr7 (85-200)||(25480898-25481013)
chr7 (91-179)||(44799867-44799955)
chr7 (86-119)||(36781655-36781688)
[»] chr8 (5 HSPs)
chr8 (88-200)||(9740330-9740442)
chr8 (85-190)||(44097361-44097466)
chr8 (85-200)||(37714892-37715007)
chr8 (89-191)||(30702419-30702521)
chr8 (85-185)||(28211155-28211255)
[»] chr6 (8 HSPs)
chr6 (99-214)||(3024945-3025060)
chr6 (85-190)||(22757244-22757349)
chr6 (89-200)||(15170291-15170402)
chr6 (89-200)||(15179063-15179174)
chr6 (89-200)||(15473029-15473140)
chr6 (90-191)||(15160280-15160381)
chr6 (85-190)||(26585852-26585957)
chr6 (101-200)||(9421539-9421638)
[»] chr5 (7 HSPs)
chr5 (89-215)||(17204798-17204924)
chr5 (93-189)||(26756096-26756192)
chr5 (86-134)||(31293483-31293531)
chr5 (89-197)||(32225465-32225573)
chr5 (85-190)||(23924463-23924568)
chr5 (88-197)||(31629707-31629816)
chr5 (96-191)||(19841862-19841957)
[»] chr1 (2 HSPs)
chr1 (81-189)||(15175739-15175848)
chr1 (128-202)||(26649956-26650030)
[»] scaffold0009 (1 HSPs)
scaffold0009 (93-185)||(193782-193874)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 30187372 - 30187506
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacata 180  Q
    |||||||||||||||||||||||| ||||||| |||||| | |||| ||||||||||||||| ||||||||||||||||||||||||| |||| |||| |    
T  30187372 ctagtccctaacacccatacataacaaagggtgccgccaccagtcagtgtaactaaaggcggcagtgagcattttagctttcaaccaa-aaaaagacaaa 30187470  T
Q  181 aacttaacattatccaataaattcaccacatcctgt 216  Q
    ||||||||||||||||||||||||||||| ||||||    
T  30187471 aacttaacattatccaataaattcaccacttcctgt 30187506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 646399 - 646279
Alignment:
Q  91 acacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacat 190  Q
    |||| ||||||||| ||||||| ||| || | |||| ||||||||||||||||||||| |  |||||||||||||||| ||||  ||| |||||| ||||    
T  646399 acactcatacataacaaagggtgccgtcaccagtcagtgtaactaaaggcggtagtgaactgtttagctttcaaccaa-aaaaaaacaaaaactttacat 646301  T
Q  191 tatccaataaattcaccacatc 212  Q
    ||||||||||||||||||||||    
T  646300 tatccaataaattcaccacatc 646279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 14092650 - 14092523
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacata 180  Q
    |||||||||||||||||||||||| |||||||||||||| | |||| | || |  ||||||||| | | ||||||||||| ||| ||||||||| ||| |    
T  14092650 ctagtccctaacacccatacataacaaagggttccgccaccagtcagtatatcggaaggcggtatttatcattttagcttacaatcaagaaaagtacaaa 14092551  T
Q  181 aacttaacattatccaataaattcacca 208  Q
    || |||||| | ||||||||||| ||||    
T  14092550 aatttaacactgtccaataaatttacca 14092523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 9167062 - 9167017
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaact 134  Q
    |||||||||||||||||||||||| |||||| | ||||| ||||||    
T  9167062 taacacccatacataataaagggtgccgccaccagtcatagtaact 9167017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 81 - 209
Target Start/End: Original strand, 33035106 - 33035234
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacata 180  Q
    |||||||||||||||||||||||||||||||| |||||| |  ||| |||||||||||||||||||||||||||||||||| | ||||||||| ||||      
T  33035106 ctagtccctaacacccatacataataaagggtgccgccaccaatcagtgtaactaaaggcggtagtgagcattttagctttgagccaagaaaaagacaat 33035205  T
Q  181 aacttaacattatccaataaattcaccac 209  Q
    | |||||||||||||||||||||||||||    
T  33035206 agcttaacattatccaataaattcaccac 33035234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 14833415 - 14833341
Alignment:
Q  142 gtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatccaataaattcaccacatcctgt 216  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  14833415 gtagtgagcattttagctttcaaccaagaaaaggacagaaacttaacactatccaataaattcaccacatcctgt 14833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 42052828 - 42052713
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| | ||||||||||||||||||||||||| | |||||||||||| ||||| ||||  ||||  |||||||| |||||| |||| ||||||||||    
T  42052828 tccctaatatccatacataataaagggttccgccaccagtcattgtaactgaaggcagtagaaagcagcttagcttttaaccaaaaaaaagacataaact 42052729  T
Q  185 taacattatccaataa 200  Q
    | |||| ||| |||||    
T  42052728 tgacataatctaataa 42052713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 11973559 - 11973444
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| ||||||||||||||||||||||||||| | |||||||||||| ||||  | ||  ||||  || ||||| ||||||||||| ||||||||||    
T  11973559 tccctaatacccatacataataaagggttccgccaccagtcattgtaactgaaggtagaagaaagcagctttgcttttaaccaagaaaaagacataaact 11973460  T
Q  185 taacattatccaataa 200  Q
    | |||| ||| |||||    
T  11973459 tgacataatctaataa 11973444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 23250003 - 23249908
Alignment:
Q  105 taaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatccaataa 200  Q
    ||||||||||||||| | |||||| ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||    
T  23250003 taaagggttccgccaccagtcattataactgaaagcggaagttagcatattagcttttaaccaagaaaaagacataaactttacattgtctaataa 23249908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 32627095 - 32626991
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||||||| ||| ||||||||||| ||||||| |  ||||||||||  || |  | ||||||||  ||| |||| |||||||| || ||||||||||    
T  32627095 tccctaacaccaatatataataaagggctccgccaccaatcattgtaaccgaaagtagaagtgagcaacttaccttttaaccaagagaaagacataaact 32626996  T
Q  185 taaca 189  Q
    |||||    
T  32626995 taaca 32626991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 39606541 - 39606464
Alignment:
Q  90 aacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaacca 167  Q
    ||||||||||||||| | ||||| |||||| | |||| |||||||||| |||| ||| ||| | || |||||||||||    
T  39606541 aacacccatacataaaagagggtcccgccaccggtcagtgtaactaaaagcggaagtaagcttgttcgctttcaacca 39606464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 10358987 - 10358860
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacata 180  Q
    ||||||||||||||| |||||||| ||||||| |||||| | |||| | ||||| ||||||||| | ||||||||||||||||||||||||||||||| |    
T  10358987 ctagtccctaacacctatacataacaaagggtgccgccaccagtcagtataactgaaggcggtatttagcattttagctttcaaccaagaaaaggacaaa 10358888  T
Q  181 aacttaacattatccaataaattcacca 208  Q
    || |||||| | ||||||||||||||||    
T  10358887 aatttaacactgtccaataaattcacca 10358860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 5475295 - 5475400
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||||||||| ||||| ||||||||||||||| ||| |||||||||  || |||| ||||||||| |||||||| ||||||| ||| |||| |||||    
T  5475295 tccctaacacccaaacatactaaagggttccgccacccgccattgtaaccgaaagcggaagtgagcatcttagcttttaaccaagtaaacgacaaaaact 5475394  T
Q  185 taacat 190  Q
    | ||||    
T  5475395 ttacat 5475400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 20188528 - 20188460
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgag 149  Q
    ||||| ||||||||||||||| |||||||||| |||||| | |||| ||||||||||||| | ||||||    
T  20188528 ctagttcctaacacccatacaaaataaagggtgccgccaccggtcagtgtaactaaaggcagaagtgag 20188460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 29001595 - 29001694
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| ||||||||||||| |||| |||||||| | |||||||||| | || || |||| || ||  |||||||| ||||||||||| ||||||||||    
T  29001595 tccctaatacccatacataattaagg-ttccgccaccagtcattgtaattgaaagcagtagagatcaacttagcttttaaccaagaaaaagacataaact 29001693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 19145616 - 19145499
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaagg--cggtagtgagcattttagctttcaaccaagaaaaggacataaa 182  Q
    |||| ||||||||||||||||||||||| |||||| | |||||| ||||| || |  | | ||||||||  |||||||| |||||  |||| ||||||||    
T  19145616 tccccaacacccatacataataaagggtgccgccaccagtcattataactgaaagcacagaagtgagcagcttagcttttaaccataaaaatgacataaa 19145517  T
Q  183 cttaacattatccaataa 200  Q
    ||| |||| ||| |||||    
T  19145516 cttgacataatctaataa 19145499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 51073244 - 51073135
Alignment:
Q  88 ctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaa 187  Q
    ||||||||||||||||  | ||||| |||||| | |||| ||||||| || | || ||| ||| | ||||||||||||||  |||| ||| | |||||||    
T  51073244 ctaacacccatacatagaagagggtcccgccaccagtcagtgtaactgaaagtggaagtaagcttgttagctttcaaccataaaaaagacgttaacttaa 51073145  T
Q  188 cattatccaa 197  Q
    || |||||||    
T  51073144 cactatccaa 51073135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1951 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1951
Description:

Target: scaffold1951; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 583 - 716
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacata 180  Q
    |||||||||||||||||||||||| ||| ||| |||| | | |||| ||||||||||||| |||||||| |||||||||||||| ||| |||| |||| |    
T  583 ctagtccctaacacccatacataacaaatggtgccgctaccagtcagtgtaactaaaggcagtagtgagtattttagctttcaa-caaaaaaaagacaaa 681  T
Q  181 aacttaacattatccaataaattcaccacatcctgt 216  Q
    |||||||||||||||||| |||||||||| ||||||    
T  682 aacttaacattatccaat-aattcaccacttcctgt 716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 9600356 - 9600473
Alignment:
Q  97 atacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatcca 196  Q
    |||||||||| ||||| |||||| |  ||| | ||||| || |||| |||||||||||||||||||||||||| ||| |||| ||||||||| || ||||    
T  9600356 atacataatagagggtgccgccaccaatcagtataactgaaagcggaagtgagcattttagctttcaaccaagcaaaagacaaaaacttaacgttctcca 9600455  T
Q  197 ataaattcaccacatcct 214  Q
    |||||||||||| |||||    
T  9600456 ataaattcaccaaatcct 9600473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 9827927 - 9828044
Alignment:
Q  97 atacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatcca 196  Q
    |||||||||| ||||| |||||| |  ||| | ||||| || |||| |||||||||||||||||||||||||| ||| |||| ||||||||| || ||||    
T  9827927 atacataatagagggtgccgccaccaatcagtataactgaaagcggaagtgagcattttagctttcaaccaagcaaaagacaaaaacttaacgttctcca 9828026  T
Q  197 ataaattcaccacatcct 214  Q
    |||||||||||| |||||    
T  9828027 ataaattcaccaaatcct 9828044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 13451324 - 13451226
Alignment:
Q  90 aacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    ||||||||||||||||||||| | |||||| | |||||| |||||||| |  | ||||||||  |||||||| ||||||||||| ||||||||||||||    
T  13451324 aacacccatacataataaaggatgccgccaccagtcattataactaaaaggagaagtgagcaacttagcttttaaccaagaaaaagacataaacttaac 13451226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 42266157 - 42266272
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||||||||||||| | |||||||| |||||| | ||| || ||||| || |||| |||| |||| |||||||| |||||  |||| |||||||| |    
T  42266157 tccctaacacccatacaaagtaaagggtgccgccaccggtcgttataactgaaagcggaagtgggcatattagcttttaaccataaaaaagacataaatt 42266256  T
Q  185 taacattatccaataa 200  Q
    ||||| ||||||||||    
T  42266257 taacactatccaataa 42266272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 178
Target Start/End: Original strand, 19314909 - 19315002
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggaca 178  Q
    ||||||||||||||| ||||||||||| ||||||| | |||||||||||  || |||| ||||||||  |||||||| ||||||| ||| ||||    
T  19314909 tccctaacacccatatataataaagggctccgccaccggtcattgtaaccgaaagcggaagtgagcagcttagcttttaaccaagtaaacgaca 19315002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 25481013 - 25480898
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    |||||||||||||||||||||||||||| |||||| | |||| | ||||| || ||| | | || |||||| |||||| |||||| ||| |||| | |||    
T  25481013 tccctaacacccatacataataaagggtcccgccaccagtcaatataactgaaagcgattgggaacatttttgctttctaccaagcaaaagacaaatact 25480914  T
Q  185 taacattatccaataa 200  Q
    |||| || ||||||||    
T  25480913 taacgttctccaataa 25480898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Original strand, 44799867 - 44799955
Alignment:
Q  91 acacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacat 179  Q
    |||||||||||||||||||| | |||||| | || | | ||||| || |||  | ||||||||||| |||||||||||||||| |||||    
T  44799867 acacccatacataataaaggatgccgccaccagtgagtataactgaaagcgaaaatgagcattttaactttcaaccaagaaaaagacat 44799955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 36781688 - 36781655
Alignment:
Q  86 ccctaacacccatacataataaagggttccgcca 119  Q
    |||||||||||||||||||||| |||||||||||    
T  36781688 ccctaacacccatacataataaggggttccgcca 36781655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 9740330 - 9740442
Alignment:
Q  88 ctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaa 187  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||| || || |||| |||||  |||||||| |||||||||||  |||||||||| |    
T  9740330 ctaatacccatacataataaagggttccaccatcagtcattgtaactgaaagcagtagagagcagcttagcttttaaccaagaaaaatacataaacttga 9740429  T
Q  188 cattatccaataa 200  Q
    ||| ||| |||||    
T  9740430 cataatctaataa 9740442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 44097361 - 44097466
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| || |||||||| |||||||||| |||| | |||||||||||| || |  |||| ||||| ||||||||| ||||| ||||| ||||||||||    
T  44097361 tccctaatacgcatacatactaaagggttctgccaccggtcattgtaactgaaagtagtagagagcaatttagcttttaaccatgaaaaagacataaact 44097460  T
Q  185 taacat 190  Q
    | ||||    
T  44097461 tgacat 44097466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 200
Target Start/End: Complemental strand, 37715007 - 37714892
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| ||||||| ||||||||||||||||||| | || ||||||||  ||||| | ||  ||||  || ||||| ||||||||||| ||||||||||    
T  37715007 tccctaatacccatatataataaagggttccgccaccagttattgtaacagaaggcagaagaaagcaactttgcttttaaccaagaaaaagacataaact 37714908  T
Q  185 taacattatccaataa 200  Q
    | |||| ||| |||||    
T  37714907 tgacataatctaataa 37714892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 30702419 - 30702521
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    ||||||||||||| | |||||||| |||||| | |||||| ||||| || |||| ||| ||| | ||||| || || |||||||| |||| |||||| ||    
T  30702419 taacacccatacaaattaaagggtgccgccaccagtcattataactgaaagcggaagttagcctattagcctttaatcaagaaaaagacacaaactttac 30702518  T
Q  189 att 191  Q
    |||    
T  30702519 att 30702521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 28211155 - 28211255
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    |||||||||| | ||||||||||||| | |||||||| |||||| ||||| || || | |||||||    ||||||| |||||  |||| ||||||||||    
T  28211155 tccctaacacacgtacataataaaggatgccgccatcagtcattataactgaaagcagaagtgagcgacctagcttttaaccataaaaaagacataaact 28211254  T
Q  185 t 185  Q
    |    
T  28211255 t 28211255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 214
Target Start/End: Original strand, 3024945 - 3025060
Alignment:
Q  99 acataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatccaat 198  Q
    |||||||||||||| |||||| | |||| | ||||| || |||  |||||||||||||||||||| ||||||||| |||| ||||||||| || ||||||    
T  3024945 acataataaagggtgccgccaccggtcagtataactgaaagcgtaagtgagcattttagctttcatccaagaaaaagacaaaaacttaacgttctccaat 3025044  T
Q  199 aaattcaccacatcct 214  Q
    ||||| |||| |||||    
T  3025045 aaattaaccaaatcct 3025060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 22757244 - 22757349
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    |||||||||||||||||| |||||||| ||||||| |||||||||||||  || | || ||||| ||| |||||||| ||||||| ||| |||| |||||    
T  22757244 tccctaacacccatacatgataaagggctccgccacccgtcattgtaaccgaaagtggaagtgaacatcttagcttttaaccaagtaaacgacaaaaact 22757343  T
Q  185 taacat 190  Q
    | ||||    
T  22757344 tgacat 22757349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 15170291 - 15170402
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    |||||| |||||||| |||||||| |||||  | |||||| ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||||||||| ||    
T  15170291 taacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15170390  T
Q  189 attatccaataa 200  Q
    ||| || |||||    
T  15170391 attgtctaataa 15170402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 200
Target Start/End: Original strand, 15179063 - 15179174
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    |||||| |||||||| |||||||| |||||  | |||||| ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||||||||| ||    
T  15179063 taacacacatacatagtaaagggtaccgcctccagtcattataactgaaagcggaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15179162  T
Q  189 attatccaataa 200  Q
    ||| || |||||    
T  15179163 attgtctaataa 15179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 15473140 - 15473029
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    ||||||||||||||| |||||||| |||| | | |||||| ||||| || || | ||| ||||| |||||||| ||||||||||| ||||||||||| ||    
T  15473140 taacacccatacatagtaaagggtgccgcaaccagtcattataactgaaagcagaagtcagcatattagcttttaaccaagaaaaagacataaactttac 15473041  T
Q  189 attatccaataa 200  Q
    ||| || |||||    
T  15473040 attgtctaataa 15473029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 191
Target Start/End: Original strand, 15160280 - 15160381
Alignment:
Q  90 aacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaaca 189  Q
    |||||| ||||||| ||||| || |||||| | |||||| ||||| || |||| ||| ||||| |||||||| ||||||||||| ||||||||||| |||    
T  15160280 aacacctatacatagtaaagagtgccgccaccagtcattataactgaaagcggaagttagcatgttagcttttaaccaagaaaaagacataaactttaca 15160379  T
Q  190 tt 191  Q
    ||    
T  15160380 tt 15160381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 26585852 - 26585957
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| ||||||||||||||||||| ||||||| | |||||||||||  || |||| ||||||||  |||||||  ||||||| |||  |||||||||    
T  26585852 tccctaatacccatacataataaagggctccgccaccagtcattgtaaccgaaagcggaagtgagcagcttagcttgtaaccaagtaaaacacataaact 26585951  T
Q  185 taacat 190  Q
    | ||||    
T  26585952 tgacat 26585957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 9421638 - 9421539
Alignment:
Q  101 ataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatccaataa 200  Q
    ||||||||||||||||||| | |||||||||||| ||    |||| ||||| ||||||||| ||||||||||| || |||||||| |||| ||| |||||    
T  9421638 ataataaagggttccgccaccagtcattgtaactgaaattagtagagagcaatttagcttttaaccaagaaaaagatataaacttgacataatctaataa 9421539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 215
Target Start/End: Original strand, 17204798 - 17204924
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    ||||||||||||||| |||||||| |||||| | |||  | ||||| ||||||| ||| |||| ||||||||||| ||||| | | |||| |||||||||    
T  17204798 taacacccatacatagtaaagggtgccgccaccggtcggtataactgaaggcgggagtaagcaatttagctttcatccaagcatatgacaaaaacttaac 17204897  T
Q  189 attatccaataaattcaccacatcctg 215  Q
      |||||||||||| | ||| ||||||    
T  17204898 gctatccaataaatgcgccaaatcctg 17204924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 26756192 - 26756096
Alignment:
Q  93 acccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaaca 189  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || | || | |||  ||| || | ||||||||| | |||||||||||||||    
T  26756192 acccatacataataaagggttccgccaccagtcattgtaactaaaagcaggagagggcaacttaactgttaaccaagaagaagacataaacttaaca 26756096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 134
Target Start/End: Original strand, 31293483 - 31293531
Alignment:
Q  86 ccctaacacccatacataataaagggttccgccatccgtcattgtaact 134  Q
    ||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  31293483 ccctaacacccatacataataaagggtgccgccatcagtcattataact 31293531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 32225465 - 32225573
Alignment:
Q  89 taacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaac 188  Q
    |||||| |||||||||||| ||||||| ||| | |||| | ||||| ||||||   | || |||||||||||||||||||| ||| |||| |||||||||    
T  32225465 taacactcatacataataaggggttccaccaccagtcagtataactgaaggcgaatgggaacattttagctttcaaccaagcaaaagacagaaacttaac 32225564  T
Q  189 attatccaa 197  Q
     || |||||    
T  32225565 gttctccaa 32225573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 190
Target Start/End: Original strand, 23924463 - 23924568
Alignment:
Q  85 tccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaact 184  Q
    ||||||| ||||||||||||||||||||||| ||| | |||||| ||||| ||  | | |||||| |  |||||||| |||||  |||| |||||||| |    
T  23924463 tccctaagacccatacataataaagggttcctccaccagtcattataactgaaaacagaagtgagtaacttagcttttaaccataaaaatgacataaatt 23924562  T
Q  185 taacat 190  Q
    ||||||    
T  23924563 taacat 23924568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 31629707 - 31629816
Alignment:
Q  88 ctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaa 187  Q
    ||||||||||||||||  | ||||| |||||||| |||| ||||||| || |||| ||| ||| | ||||||||||||||  |||| ||| | |||||||    
T  31629707 ctaacacccatacatagaagagggtcccgccatcagtcagtgtaactgaaagcggaagtaagcttgttagctttcaaccataaaaaagacgttaacttaa 31629806  T
Q  188 cattatccaa 197  Q
     | |||||||    
T  31629807 tactatccaa 31629816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 191
Target Start/End: Original strand, 19841862 - 19841957
Alignment:
Q  96 catacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacatt 191  Q
    |||||| | |||||||| ||||||||||||||| ||||| ||   || ||||||||| ||||| || ||||| ||||| |||| |||||| |||||    
T  19841862 catacaaagtaaagggtgccgccatccgtcattataactgaaaatggaagtgagcatattagcatttaaccatgaaaaagacaaaaactttacatt 19841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 15175848 - 15175739
Alignment:
Q  81 ctagtccctaacacccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaacca-agaaaaggacat 179  Q
    |||||| ||||||||||| ||||  | ||||| |||||||| |||| ||||||| |||||||  || ||||| |||||||||||||| | |||| |||||    
T  15175848 ctagtctctaacacccatgcatagaagagggtgccgccatcagtcagtgtaactgaaggcggatgtaagcatattagctttcaaccataaaaaaagacat 15175749  T
Q  180 aaacttaaca 189  Q
     |||||||||    
T  15175748 taacttaaca 15175739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 202
Target Start/End: Complemental strand, 26650030 - 26649956
Alignment:
Q  128 tgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaacttaacattatccaataaat 202  Q
    ||||||||||||||| ||| |||   ||||||||||||||  |||| ||||| ||||||||||| ||||| ||||    
T  26650030 tgtaactaaaggcggaagtaagctaattagctttcaaccataaaaatgacattaacttaacattgtccaacaaat 26649956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 185
Target Start/End: Complemental strand, 193874 - 193782
Alignment:
Q  93 acccatacataataaagggttccgccatccgtcattgtaactaaaggcggtagtgagcattttagctttcaaccaagaaaaggacataaactt 185  Q
    |||||||||||||||||| |||||||| |  ||||||||||| || || |||| | |||  |||||| | ||||||||||| |||||||||||    
T  193874 acccatacataataaaggattccgccaccgatcattgtaactgaaagcagtagagggcagcttagctattaaccaagaaaaagacataaactt 193782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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