View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17410_low_8 (Length: 210)
Name: NF17410_low_8
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17410_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 23596208 - 23596390
Alignment:
| Q |
9 |
gagtgagatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596208 |
gagtgacatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
23596307 |
T |
|
| Q |
109 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23596308 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgt |
23596390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 23587363 - 23587538
Alignment:
| Q |
16 |
atgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgctgaagaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
23587363 |
atgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaagcggaagagaagcaattttccgctgaagaga |
23587462 |
T |
|
| Q |
116 |
tatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgt |
191 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
23587463 |
tatcttctatggttcttatgaaaatgaaggagattgcagaggcttatcttggtacaacgattaagaatgccgttgt |
23587538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 8017036 - 8017219
Alignment:
| Q |
9 |
gagtgagatgaaattgtggccgttcaaggtcattcctggccctgctgacaaaccaatgatcgtggtgaactacaaggcagaggagaagcaattttctgct |
108 |
Q |
| |
|
|||||| ||||| |||||||| || ||||| ||| |||| |||| ||| || |||||||| | || |||||||||| ||||| ||||||||| ||||| |
|
|
| T |
8017036 |
gagtgacatgaagttgtggccttttaaggttattgctggtcctggtgaaaagccaatgattggtgttaactacaagggtgaggacaagcaatttgctgct |
8017135 |
T |
|
| Q |
109 |
gaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtt |
192 |
Q |
| |
|
|| || || || || ||||| || || |||||| ||||| || || |||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
8017136 |
gaggaaatttcgtctatggtactcataaagatgcgtgagattgctgaagcttacctcggttcaactgtgaagaatgccgttgtt |
8017219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 192
Target Start/End: Original strand, 17717662 - 17717760
Alignment:
| Q |
94 |
aagcaattttctgctgaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaattaagaatgccgttgtt |
192 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||||| || ||||||| ||||| |||||||| ||| ||||| | || |||| ||||||||||||| |
|
|
| T |
17717662 |
aagcaatttgctgcagaagagatctcttccatggtactctggaagatgcgtgagattgcagaggcctactttggttctaccattaggaatgccgttgtt |
17717760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 17666379 - 17666495
Alignment:
| Q |
76 |
aactacaaggcagaggagaagcaattttctgctgaagagatatcttccatggttcttatgaagatgaaggagatcgcagaggcttaccttggtacaacaa |
175 |
Q |
| |
|
|||||||||| || || ||||||||||| || |||||||| ||||||||||| || | ||||||| ||| | || ||||| |||||||| | | | |
|
|
| T |
17666379 |
aactacaagggtgaagataagcaattttccgcagaagagatctcttccatggtactcacgaagatgcgtgaggttgctgaggcctaccttggctctgcca |
17666478 |
T |
|
| Q |
176 |
ttaagaatgccgttgtt |
192 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17666479 |
ttaagaatgccgttgtt |
17666495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University