View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17410_low_9 (Length: 208)

Name: NF17410_low_9
Description: NF17410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17410_low_9
NF17410_low_9
[»] scaffold0007 (2 HSPs)
scaffold0007 (14-192)||(73785-73963)
scaffold0007 (20-89)||(74029-74098)
[»] chr3 (1 HSPs)
chr3 (14-193)||(616444-616623)
[»] chr6 (10 HSPs)
chr6 (11-189)||(28489034-28489212)
chr6 (11-189)||(29801444-29801622)
chr6 (17-172)||(28475620-28475775)
chr6 (16-172)||(29691316-29691472)
chr6 (14-106)||(29721434-29721526)
chr6 (18-132)||(29672621-29672735)
chr6 (20-89)||(28488902-28488971)
chr6 (20-89)||(29801312-29801381)
chr6 (64-100)||(29705212-29705248)
chr6 (122-166)||(29705243-29705287)
[»] scaffold0012 (2 HSPs)
scaffold0012 (54-153)||(237204-237303)
scaffold0012 (16-79)||(210594-210657)


Alignment Details
Target: scaffold0007 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 73963 - 73785
Alignment:
Q  14 aggtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 113  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  73963 aggtgaaaaactctcaagattactacaatatgaaagttcaagttcttctagagaaggtaacatgagatatggaataattctgattttggtgcagtttgta 73864  T
Q  114 accctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagat 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73863 accctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagat 73785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 74098 - 74029
Alignment:
Q  20 aaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaata 89  Q
    |||||||||||||  | |||||| ||||| ||| |||||||||||||||| ||||||||||| |||||||    
T  74098 aaaactctcaagaccaatacaatttgaaagatcgagttcttctagagaagctaacatgagaggtggaata 74029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 193
Target Start/End: Complemental strand, 616623 - 616444
Alignment:
Q  14 aggtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgta 113  Q
    |||| ||||| ||||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||    
T  616623 aggtaaaaaattctcaagattagtacaatctgaaagatcgagttcttctagagaaggtaacatgagagatggaataattttgattttggtgcattttata 616524  T
Q  114 accctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaagatc 193  Q
    | ||| ||||||||||| ||||||| |||||||||||||| ||||||||| || |||||   ||||||| ||||||||||    
T  616523 atccttaagattttaagttctccaaaaaatccattcaccaggagaggaaaactttctagactataacaacgtgaaagatc 616444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 28489034 - 28489212
Alignment:
Q  11 caaaggtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 110  Q
    |||||||| |||||||||||||  | |||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || |||    
T  28489034 caaaggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaattt 28489133  T
Q  111 gtaaccctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaa 189  Q
     ||||||| ||||||||||| |  |||| ||||| ||||||||||||||||||||| |||||   ||||||||||||||    
T  28489134 ataacccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaa 28489212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 189
Target Start/End: Original strand, 29801444 - 29801622
Alignment:
Q  11 caaaggtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagttt 110  Q
    |||||||| |||||||||||||  | |||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||| || |||    
T  29801444 caaaggtggaaaactctcaagaccagtacaatctgaaagatcaagttcttctagagaaggtaaaatgagtgatggaataattttgattttggtacaattt 29801543  T
Q  111 gtaaccctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctagttgataacaatgtgaaa 189  Q
     ||||||| ||||||||||| |  |||| ||||| ||||||||||||||||||||| |||||   ||||||||||||||    
T  29801544 ataacccttaagattttaagtttaccaagaaatctattcaccatgagaggaaagctttctaggctataacaatgtgaaa 29801622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 28475620 - 28475775
Alignment:
Q  17 tgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaacc 116  Q
    ||||||||| |||||| || |||||| | ||| ||| |||||||||||||||||||||| ||||||| |||||| |||||||||| ||||   | |||||    
T  28475620 tgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagattgaataagtctgattttgctgcaacctataacc 28475719  T
Q  117 ctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctag 172  Q
    |||||||||||||| ||||||| ||||||| |||||| ||||||||| || |||||    
T  28475720 ctcaagattttaagttctccaagaaatccactcaccacgagaggaaaactttctag 28475775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 29691316 - 29691472
Alignment:
Q  16 gtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaac 115  Q
    |||||||||| |||||| || |||||| | ||| ||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||    | ||||    
T  29691316 gtgaaaaactgtcaagactagtacaatctaaaagatcgagttcttctagagaaggtaacacgagagatggaataagtctgattttgctgctacctataac 29691415  T
Q  116 cctcaagattttaagctctccaacaaatccattcaccatgagaggaaagctgtctag 172  Q
    ||||||||||||||| ||||||| ||||||| |||||| | ||||||| || |||||    
T  29691416 cctcaagattttaagttctccaagaaatccactcaccacgggaggaaaactttctag 29691472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 29721434 - 29721526
Alignment:
Q  14 aggtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgca 106  Q
    |||||||||| |||||||||||||||| | ||||| ||  |||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29721434 aggtgaaaaattctcaagattactacactctgaaagatagagttcttctagagaaggtaacatgagaggtggaataattctgatttcggtgca 29721526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 29672621 - 29672735
Alignment:
Q  18 gaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccc 117  Q
    |||||||||||||||||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||| | |   ||||| ||||||  || ||||||    
T  29672621 gaaaaactctcaagattaatacaatatgaaagatcaagtttttctagagagggtaacatgagagatggaagactgtggatttcggtgcaacttataaccc 29672720  T
Q  118 tcaagattttaagct 132  Q
    ||| |||||||||||    
T  29672721 tcaggattttaagct 29672735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 28488902 - 28488971
Alignment:
Q  20 aaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaata 89  Q
    ||||||||||||| || |||||| ||||| |||||||||||||||||||| ||||||||||| |||||||    
T  28488902 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 28488971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 29801312 - 29801381
Alignment:
Q  20 aaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgagagatggaata 89  Q
    ||||||||||||| || |||||| ||||| |||||||||||||||||||| ||||||||||| |||||||    
T  29801312 aaaactctcaagactaatacaatctgaaagatcaagttcttctagagaagctaacatgagagttggaata 29801381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 29705212 - 29705248
Alignment:
Q  64 gagaaggtaacatgagagatggaataattctgatttt 100  Q
    |||||||||||||||||||||||||||||||||||||    
T  29705212 gagaaggtaacatgagagatggaataattctgatttt 29705248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 166
Target Start/End: Original strand, 29705243 - 29705287
Alignment:
Q  122 gattttaagctctccaacaaatccattcaccatgagaggaaagct 166  Q
    ||||||||| ||||||||| ||| |||||||||||||| ||||||    
T  29705243 gattttaagttctccaacatatctattcaccatgagagcaaagct 29705287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 237204 - 237303
Alignment:
Q  54 agttcttctagagaaggtaacatgagagatggaataattctgattttggtgcagtttgtaaccctcaagattttaagctctccaacaaatccattcacca 153  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||   | ||||||||||||||||||| | ||||||||||||||||||||    
T  237204 agttcttctagagaaggtaatatgagagatggaataattttgattttggtgcatcctataaccctcaagattttaagttttccaacaaatccattcacca 237303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 210594 - 210657
Alignment:
Q  16 gtgaaaaactctcaagattactacaatatgaaatatcaagttcttctagagaaggtaacatgag 79  Q
    ||||||||| ||||||| |||||||   ||||| ||||||||||||||||||||||||||||||    
T  210594 gtgaaaaaccctcaagaatactacatcctgaaagatcaagttcttctagagaaggtaacatgag 210657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University