View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17411_low_5 (Length: 294)

Name: NF17411_low_5
Description: NF17411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17411_low_5
NF17411_low_5
[»] chr2 (12 HSPs)
chr2 (14-283)||(7644427-7644697)
chr2 (235-283)||(18579170-18579218)
chr2 (235-280)||(4051809-4051854)
chr2 (235-280)||(12566085-12566130)
chr2 (238-283)||(18719534-18719579)
chr2 (235-283)||(441333-441381)
chr2 (235-283)||(4658335-4658383)
chr2 (235-283)||(9391660-9391708)
chr2 (235-283)||(34546433-34546481)
chr2 (235-283)||(43427389-43427437)
chr2 (235-283)||(43971507-43971555)
chr2 (239-283)||(45082002-45082046)
[»] chr7 (13 HSPs)
chr7 (235-283)||(37490787-37490835)
chr7 (235-283)||(42880034-42880082)
chr7 (237-283)||(40753528-40753574)
chr7 (237-282)||(39557327-39557372)
chr7 (237-282)||(48843557-48843602)
chr7 (235-283)||(715963-716011)
chr7 (237-283)||(13405227-13405273)
chr7 (237-283)||(27947601-27947647)
chr7 (238-283)||(29531035-29531080)
chr7 (235-283)||(2297041-2297089)
chr7 (235-283)||(10599216-10599264)
chr7 (235-283)||(22297999-22298047)
chr7 (235-283)||(45948730-45948778)
[»] chr6 (5 HSPs)
chr6 (235-283)||(8030645-8030693)
chr6 (235-283)||(29399949-29399997)
chr6 (237-283)||(17828301-17828347)
chr6 (237-283)||(24163816-24163862)
chr6 (237-283)||(24556030-24556076)
[»] chr4 (13 HSPs)
chr4 (235-283)||(20448042-20448090)
chr4 (237-283)||(45043694-45043740)
chr4 (235-283)||(40345453-40345501)
chr4 (237-280)||(52162111-52162154)
chr4 (237-283)||(6991367-6991413)
chr4 (237-283)||(54042289-54042335)
chr4 (235-283)||(1819565-1819613)
chr4 (235-283)||(4505340-4505388)
chr4 (235-283)||(19451317-19451365)
chr4 (235-283)||(30261262-30261310)
chr4 (235-283)||(39982106-39982154)
chr4 (235-283)||(51733600-51733648)
chr4 (235-283)||(52957896-52957944)
[»] chr3 (9 HSPs)
chr3 (235-283)||(30431123-30431171)
chr3 (235-283)||(3152905-3152953)
chr3 (237-283)||(9189534-9189580)
chr3 (237-283)||(50038270-50038316)
chr3 (235-283)||(32492280-32492328)
chr3 (235-283)||(36460809-36460857)
chr3 (243-283)||(36844841-36844881)
chr3 (235-283)||(38016378-38016426)
chr3 (235-283)||(51398013-51398061)
[»] chr1 (16 HSPs)
chr1 (235-283)||(40717396-40717444)
chr1 (235-283)||(34032180-34032228)
chr1 (237-283)||(25487093-25487139)
chr1 (237-283)||(27720963-27721009)
chr1 (237-283)||(44258607-44258653)
chr1 (238-283)||(14593420-14593465)
chr1 (235-280)||(15573610-15573655)
chr1 (235-283)||(10842783-10842831)
chr1 (235-283)||(26352181-26352229)
chr1 (235-283)||(29567899-29567947)
chr1 (235-283)||(31491870-31491918)
chr1 (235-283)||(32807038-32807086)
chr1 (235-283)||(38531397-38531445)
chr1 (235-283)||(50094232-50094280)
chr1 (235-283)||(50249313-50249361)
chr1 (243-283)||(52706892-52706932)
[»] chr8 (10 HSPs)
chr8 (235-289)||(39765955-39766009)
chr8 (235-283)||(6374417-6374465)
chr8 (235-283)||(40228577-40228625)
chr8 (237-283)||(514879-514925)
chr8 (237-283)||(17920961-17921007)
chr8 (237-283)||(40362440-40362486)
chr8 (237-283)||(43084729-43084775)
chr8 (235-283)||(15160548-15160596)
chr8 (235-283)||(39463262-39463310)
chr8 (235-283)||(39698768-39698816)
[»] scaffold0332 (1 HSPs)
scaffold0332 (235-283)||(3912-3960)
[»] scaffold2107 (1 HSPs)
scaffold2107 (237-283)||(615-661)
[»] chr5 (11 HSPs)
chr5 (237-283)||(3306111-3306157)
chr5 (235-280)||(15167115-15167160)
chr5 (235-283)||(6518979-6519027)
chr5 (235-283)||(7317031-7317079)
chr5 (235-283)||(10345034-10345082)
chr5 (235-283)||(13761560-13761608)
chr5 (235-283)||(14620596-14620644)
chr5 (235-283)||(24280996-24281044)
chr5 (235-283)||(24381168-24381216)
chr5 (235-283)||(35766002-35766050)
chr5 (235-283)||(42104165-42104213)
[»] scaffold0110 (1 HSPs)
scaffold0110 (235-283)||(24842-24890)
[»] scaffold0048 (1 HSPs)
scaffold0048 (235-283)||(62636-62684)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 283
Target Start/End: Original strand, 7644427 - 7644697
Alignment:
Q  14 caaaacaaagagtagttacaacttttcttaatttgtgagactcttaaaaacaatttttctcaattagtatacattattaatgtaaacttattttaaatca 113  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7644427 caaaacaaagtgtagttacaacttttcttaatttgtgagactcttaaaaacaatttttctcaattagtatacattattaatgtaaacttatttcaaatca 7644526  T
Q  114 gcatcaaatgatatgacaacacatcattagatttatgtatnnnnnnnttacattgtcggtgtacaacaattaaatattacttcgttcgttttaaaatagg 213  Q
    ||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  7644527 gcatcaaatgatatgacaatacatcattagatttatgtataaaaaaattacattgtcggtgtacaacaattaaatattactccgttcgttttaaaatggg 7644626  T
Q  214 tgtcgttttaat-nnnnnnnnntcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||          | |||||||||||||||||||||||||||  ||||||||| ||||||||    
T  7644627 tgtcgttttaataaaaaaaaaattaaaatgaatgtcactttcagtattcaatataataataactttttctt 7644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 18579170 - 18579218
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  18579170 tcaaaatgaatgtcactttcagttttcaatgcaataataattttttctt 18579218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 4051854 - 4051809
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataatttttt 280  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  4051854 tcaaaatgaatgtcactttcagtttccaatgcaataataatttttt 4051809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 12566130 - 12566085
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataatttttt 280  Q
    ||||||||||||||||||||||| | ||| | ||||||||||||||    
T  12566130 tcaaaatgaatgtcactttcagtttccaatgcaataataatttttt 12566085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 18719579 - 18719534
Alignment:
Q  238 aaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||||||||||| ||||| | |||||||| ||||||||    
T  18719579 aaatgaatgtcactttcagttttcaatgcaataataactttttctt 18719534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 441381 - 441333
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||||||||||| || ||||| | |||||||| ||||||||    
T  441381 tcaaaatgaatgtcactttctgttttcaatgcaataataactttttctt 441333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 4658383 - 4658335
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||  ||||| | ||||| |||||||||||||||||||    
T  4658383 tcaaaatgaatgtctttttcatttttcaatgtaataataattttttctt 4658335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 9391708 - 9391660
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||| ||||||| || || | |||||||||||||||||    
T  9391708 tcaaaatgaatgtcattttcagtttttaatgcaataataattttttctt 9391660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 34546481 - 34546433
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | | ||| | |||||||||||||||||    
T  34546481 tcaaaatgaatgtcactttcaatttccaatgcaataataattttttctt 34546433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 43427437 - 43427389
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  43427437 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 43427389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 43971507 - 43971555
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  43971507 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 43971555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 45082046 - 45082002
Alignment:
Q  239 aatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||| | ||| | |||||||||||||||||    
T  45082046 aatgaatgtcactttcagtttccaatgcaataataattttttctt 45082002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 37490787 - 37490835
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  37490787 tcaaaatgaatgtcactttcagttttcaatgcaataataattttttctt 37490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 42880082 - 42880034
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||    
T  42880082 tcaaaatgaatgtcactttcagttttcaatgtaataataactttttctt 42880034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 40753574 - 40753528
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  40753574 aaaatgaatgtcattttcagttttcaatgtaataataattttttctt 40753528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 39557327 - 39557372
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttct 282  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  39557327 aaaataaatgtcactttcagttttcaatgtaataataattttttct 39557372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 237 - 282
Target Start/End: Original strand, 48843557 - 48843602
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttct 282  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||||    
T  48843557 aaaatgaatgtcactttcagttttcaatgcaataataattttttct 48843602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 716011 - 715963
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  716011 tcaaaatgaatgtcactttcagtttccaatgcaataataattttttctt 715963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 13405273 - 13405227
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||| |||||||||| ||||||||    
T  13405273 aaaatgaatgtcactttcagtttccaatgtaataataactttttctt 13405227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 27947647 - 27947601
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  27947647 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 27947601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 29531080 - 29531035
Alignment:
Q  238 aaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||| ||||||| ||||| | |||||||||||||||||    
T  29531080 aaatgaatgtcattttcagttttcaatgcaataataattttttctt 29531035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 2297041 - 2297089
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||  ||||||||    
T  2297041 tcaaaatgaatgtcactttcagttttcaatgcaataatatctttttctt 2297089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 10599216 - 10599264
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||| ||||||||||| ||||| | |||||||| ||||||||    
T  10599216 tcaaaatgaatatcactttcagttttcaatgcaataataactttttctt 10599264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 22297999 - 22298047
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  22297999 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 22298047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 45948778 - 45948730
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  45948778 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 45948730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 8030645 - 8030693
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  8030645 tcaaaatgaatgttactttcagttttcaatgtaataataattttttctt 8030693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 29399949 - 29399997
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  29399949 tcaaaatgaatgtcactttcagtttccaatgcaataataattttttctt 29399997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 17828301 - 17828347
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||| | ||| ||||||||| |||||||||||||||||||    
T  17828301 aaaatgaatgttattttaagtattcaatgtaataataattttttctt 17828347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 24163862 - 24163816
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||| | |||||||||||||||||    
T  24163862 aaaatgaatgtcactttcagtttccaatgcaataataattttttctt 24163816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 24556076 - 24556030
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||| ||||||| ||||||| ||||| |||||||||||||||||||    
T  24556076 aaaataaatgtcattttcagttttcaatgtaataataattttttctt 24556030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 20448042 - 20448090
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  20448042 tcaaaatgaatgtcactttcagttttcaatgcaataataattttttctt 20448090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 45043740 - 45043694
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  45043740 aaaatgaatgtcactttcagttttcaatgcaataataattttttctt 45043694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 40345501 - 40345453
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  40345501 tcaaaatgaatgtcactttcagtttccaatgcaataataattttttctt 40345453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 237 - 280
Target Start/End: Original strand, 52162111 - 52162154
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataatttttt 280  Q
    ||||||||||||||||||| | ||||||| ||||||||||||||    
T  52162111 aaaatgaatgtcactttcaattttcaacgcaataataatttttt 52162154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 6991413 - 6991367
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| |||||   |||||||||||||||||    
T  6991413 aaaatgaatgtcactttcagttttcaatacaataataattttttctt 6991367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 54042335 - 54042289
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||||||||| || | ||| |||||||||||||||||||    
T  54042335 aaaatgaatgtcactttcggtttccaatgtaataataattttttctt 54042289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 1819565 - 1819613
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  1819565 tcaaaatgaatgtcactttcagtttccaatgcaataataaatttttctt 1819613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 4505340 - 4505388
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  4505340 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 4505388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 19451365 - 19451317
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  19451365 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 19451317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 30261262 - 30261310
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | ||||||||| |||||||    
T  30261262 tcaaaatgaatgtcactttcagtttccaatgcaataataatgttttctt 30261310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 39982106 - 39982154
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  39982106 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 39982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 51733648 - 51733600
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| |  || | |||||||||||||||||    
T  51733648 tcaaaatgaatgtcactttcagtttctaatgcaataataattttttctt 51733600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 52957944 - 52957896
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  52957944 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 52957896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 30431123 - 30431171
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  30431123 tcaaaatgaatgtcactttcagttttcaatgcaataataattttttctt 30431171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 3152953 - 3152905
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  3152953 tcaaaatgaatgtcactttcagttttcaatgcaataataactttttctt 3152905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 9189580 - 9189534
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  9189580 aaaatgaatgtcactttcagttttcaatgaaataataactttttctt 9189534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 50038316 - 50038270
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  50038316 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 50038270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 32492328 - 32492280
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||||| | |||||||| ||||||||    
T  32492328 tcaaaatgaatgtcactttcaattttcaatgcaataataactttttctt 32492280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 36460809 - 36460857
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||| ||||||||||| ||||| | |||||||| ||||||||    
T  36460809 tcaaaatgaatatcactttcagttttcaatgcaataataactttttctt 36460857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 36844881 - 36844841
Alignment:
Q  243 aatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||| ||||| | |||||||||||||||||    
T  36844881 aatgtcactttcagttttcaatgcaataataattttttctt 36844841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 38016378 - 38016426
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  38016378 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 38016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 51398013 - 51398061
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||| ||||||||||| ||| ||||| |||||||||| ||||||||    
T  51398013 tcaaaataaatgtcacttttagttttcaatgtaataataactttttctt 51398061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 40717444 - 40717396
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  40717444 tcaaaatgaatgtcactttcagttttcaatgcaataataattttttctt 40717396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 34032228 - 34032180
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||||||||||||    
T  34032228 tcaaaatgaatgtcactttcagtttccaatgcaataataattttttctt 34032180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 25487093 - 25487139
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  25487093 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 25487139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 27720963 - 27721009
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||    
T  27720963 aaaatgaatgtcactttcagttttcaatataataataactttttctt 27721009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 44258653 - 44258607
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||| | |||||||||||||||||    
T  44258653 aaaatgaatgtcactttcagtttccaatgcaataataattttttctt 44258607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 14593465 - 14593420
Alignment:
Q  238 aaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||    
T  14593465 aaatgaatgtcactttcagtttccaatgcaataataattttttctt 14593420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 15573610 - 15573655
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataatttttt 280  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||||    
T  15573610 tcaaaatgaatgtcactttcagttttcaatgcaataataacttttt 15573655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 10842783 - 10842831
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | ||||||||  |||||||    
T  10842783 tcaaaatgaatgtcactttcagttttcaatgcaataataacattttctt 10842831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 26352229 - 26352181
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||| ||| ||||| | |||||||| ||||||||    
T  26352229 tcaaaatgaatgtcacttttagttttcaatgcaataataactttttctt 26352181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 29567899 - 29567947
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  29567899 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 29567947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 31491918 - 31491870
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||||| || ||||||| ||||||||    
T  31491918 tcaaaatgaatgtcactttcaattttcaatgtcataataactttttctt 31491870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 32807086 - 32807038
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  32807086 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 32807038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 38531445 - 38531397
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||| ||||||| | ||| | |||||||||||||||||    
T  38531445 tcaaaatgaatgtcattttcagtttccaatgcaataataattttttctt 38531397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 50094232 - 50094280
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  50094232 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 50094280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 50249313 - 50249361
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  50249313 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 50249361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 52706892 - 52706932
Alignment:
Q  243 aatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||| || || |||||||||||||||||||    
T  52706892 aatgtcactttcagtttttaatgtaataataattttttctt 52706932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Complemental strand, 39766009 - 39765955
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttcttctcact 289  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||||||| |||||    
T  39766009 tcaaaatgaatgtcactttcagttttcaatgcaataataactttttcttttcact 39765955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 6374417 - 6374465
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  6374417 tcaaaatgaatgtcactttcagttttcaatgcaataataactttttctt 6374465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 40228577 - 40228625
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  40228577 tcaaaatgaatgtcactttcagttttcaatgcaataataactttttctt 40228625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 514879 - 514925
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||||    
T  514879 aaaatgaatgtcactttcaattttcaatgcaataataattttttctt 514925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 17920961 - 17921007
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  17920961 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 17921007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 40362440 - 40362486
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  40362440 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 40362486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 43084775 - 43084729
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  43084775 aaaatgaatgtcactttcagttttcaatgcaataataactttttctt 43084729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 15160596 - 15160548
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  15160596 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 15160548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 39463262 - 39463310
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  39463262 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 39463310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 39698816 - 39698768
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  39698816 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 39698768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 3960 - 3912
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| ||||| | |||||||| ||||||||    
T  3960 tcaaaatgaatgtcactttcagttttcaatgcaataataactttttctt 3912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 661 - 615
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||| | |||||||||||||||||    
T  661 aaaatgaatgtcactttcagtttccaatgcaataataattttttctt 615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 3306157 - 3306111
Alignment:
Q  237 aaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||| | |||||||||||||||||    
T  3306157 aaaatgaatgtcactttcagtttccaatgcaataataattttttctt 3306111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 15167160 - 15167115
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataatttttt 280  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||||    
T  15167160 tcaaaatgaatgtcactttcagttttcaatgcaataataacttttt 15167115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 6518979 - 6519027
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    |||||||||||||| |||||||| ||||| | |||||||| ||||||||    
T  6518979 tcaaaatgaatgtcgctttcagttttcaatgcaataataactttttctt 6519027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 7317031 - 7317079
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  7317031 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 7317079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 10345082 - 10345034
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  10345082 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 10345034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 13761560 - 13761608
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||| | ||||| | |||||||| ||||||||    
T  13761560 tcaaaatgaatgtcactttcacttttcaatgcaataataaatttttctt 13761608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 14620644 - 14620596
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  14620644 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 14620596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 24280996 - 24281044
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||| ||| | ||| | |||||||||||||||||    
T  24280996 tcaaaatgaatgtcacttttagtttccaatgcaataataattttttctt 24281044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 24381216 - 24381168
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||| ||| | ||| | |||||||||||||||||    
T  24381216 tcaaaatgaatgtcacttttagtttccaatgcaataataattttttctt 24381168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 35766050 - 35766002
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| |||||   |||||||| ||||||||    
T  35766050 tcaaaatgaatgtcactttcagttttcaatacaataataactttttctt 35766002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 42104213 - 42104165
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  42104213 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 42104165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 24890 - 24842
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  24890 tcaaaatgaatgtcactttcagtttccaatgcaataataactttttctt 24842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 62636 - 62684
Alignment:
Q  235 tcaaaatgaatgtcactttcagtattcaacgtaataataattttttctt 283  Q
    ||||||||||||||||||||||| | | | |||||||||| ||||||||    
T  62636 tcaaaatgaatgtcactttcagtttcctatgtaataataactttttctt 62684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University