View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17412_high_4 (Length: 277)
Name: NF17412_high_4
Description: NF17412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17412_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 13127335 - 13127087
Alignment:
| Q |
22 |
acccacacaatctgatgttgggataattggggtaaaatacgtagttgcatcgttccacttcgaaaaatgtcattgaaagtgtaaattttgactttttgga |
121 |
Q |
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| T |
13127335 |
acccacacaatctgatgttgggataattggggtaaaatacgtagttgcatcgttccacttcgaaaaatgtcattgaaagtgtaaattttgactttttgga |
13127236 |
T |
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| Q |
122 |
ttctaacttctaacataaatacctttgttccactttcacatttacacattcaccattataatgaagtttcgcggcatttcgtcttctacacgaacctgca |
221 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
13127235 |
ttctaaattctaacataaatacctttgttccactttcacatttacacattcaccattacaatgaagtttcgcggcatttcgtcttctacacgaacctgca |
13127136 |
T |
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| Q |
222 |
tacctaaatctttatcaaccccttttccattatcttcttattcttctca |
270 |
Q |
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| T |
13127135 |
aacctaaatctttatcaaccccttttccattatcttcttattcttctca |
13127087 |
T |
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