View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17412_low_1 (Length: 865)
Name: NF17412_low_1
Description: NF17412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17412_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 214 - 854
Target Start/End: Original strand, 52392532 - 52393164
Alignment:
| Q |
214 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
313 |
Q |
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| T |
52392532 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
52392631 |
T |
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| Q |
314 |
ctccagtgatggaagctcctaccagcaagtatgtatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
413 |
Q |
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| T |
52392632 |
ctccagtgatggaagctcctaccagcaagtatgcatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
52392731 |
T |
|
| Q |
414 |
atctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttcnnnnnnnnnnnnnnnnaaggtgacacgaatg |
513 |
Q |
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| T |
52392732 |
atctgaatgatctatctaaatctaattccaccctttacataaatgtaacatatccatgaatgtaatttcttttttgttttgttttcaggtgacccgaatg |
52392831 |
T |
|
| Q |
514 |
taattgttggtttggttggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttatccataaggttttggtatttat |
613 |
Q |
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| T |
52392832 |
taattg-----ttggttggtatatgggcgctaattttattttgccacttataattctgcattgaataatgttaatttatccataaggttttggtatttat |
52392926 |
T |
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| Q |
614 |
ttttctatatttactcaacacatataagggaaatgtctgtaccaannnnnnnnnnnnnnnnnggggaacggattctaagatgtattgtaaatataggaaa |
713 |
Q |
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| T |
52392927 |
ttttctatatttactcaacacatataagggaaatgtctgtaccaa---aaaaataataataaggagaacggattctaagatgtattgtaaatataggaaa |
52393023 |
T |
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| Q |
714 |
ttcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggatttttctagtcatgtgctacggtttg |
813 |
Q |
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| T |
52393024 |
ttcagtattaaatttaattaacataacaaaaattgttttttccttttcctaaacaaaggatcgtgttttctggatttttctagtcatgtgctacggtttg |
52393123 |
T |
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| Q |
814 |
ggcttttgtcttctgctttgttgtgagttgtttttgttcat |
854 |
Q |
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| T |
52393124 |
ggcttttgtctgctgctttgttgtgagttgtttttgttcat |
52393164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 52392291 - 52392505
Alignment:
| Q |
3 |
ttgataattcaattcgatatttaattggacagcccggcaaatacgaggataccgtgcccttggcccgccgcatgaagaaatcatttggcatggatgttga |
102 |
Q |
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| T |
52392291 |
ttgataattcaattcgatatttaattggacagcccggcaaatacgaggataccgtgcccttggcccgccgcatgaagaaatcatttggcatggatgttga |
52392390 |
T |
|
| Q |
103 |
cgaaaatatggagcagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgtt |
202 |
Q |
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| T |
52392391 |
caaaaatatggagcagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgtt |
52392490 |
T |
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| Q |
203 |
ccaattcaactactt |
217 |
Q |
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| T |
52392491 |
ccaattcaactactt |
52392505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 7117127 - 7117203
Alignment:
| Q |
270 |
tgagtgcaggtggaccaagagcaactgggcgtttcttaatgaacctccagtgatggaagctcctaccagcaagtatg |
346 |
Q |
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| T |
7117127 |
tgagtgcaggtggactaagagtaactgggcatttctgaatgagccaccagtaatggaagctgcatccagcaagtatg |
7117203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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