View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17412_low_3 (Length: 478)
Name: NF17412_low_3
Description: NF17412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17412_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 30414025 - 30413658
Alignment:
| Q |
1 |
tttctacatcctcttttgcttgctttgaaagagtacatgtttgttctaaagtctaatagaggctcccacacgcaaaaataaagtcgtaggacctcttgtg |
100 |
Q |
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| T |
30414025 |
tttctacatcctcttttgcttgctttgaaagagtacatgtttgttctaaagtctaatagaggctcccacccgcaaaaataaagctgtaggacatcttgtg |
30413926 |
T |
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| Q |
101 |
tccaagcataaataagtaccataaacacaggaagatctaggactaggtgtccatgtgatcatatagtaataaccatgattatagaacccacctgggttgg |
200 |
Q |
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| T |
30413925 |
accaagcataagtaagtaccataaacagaggaagatctaggactaggtgtccatgtgatcatatagtaataaccatgattatagaacccacccgggttgg |
30413826 |
T |
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| Q |
201 |
tccggttgtgttggcttgggattttcgagtatgcccctccttaaaataaaataactatgattatagataggttgattttaatttgtccatattatatcag |
300 |
Q |
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| T |
30413825 |
cccggttgtgttggtttgggattttcgagtatacccctccttaaaataaaataaccatgattatagataggttgattttaatttgtccatattatatcag |
30413726 |
T |
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| Q |
301 |
tcagtcatggttaccgcatttaaaattctgccacaatgatgatactcagaaatatatgtgataaatgt |
368 |
Q |
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| T |
30413725 |
tcagtcatggttaccgcatttaaaattctgccacaatgatgatactcagaaatatatgtgataaatgt |
30413658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 390 - 453
Target Start/End: Complemental strand, 30413606 - 30413543
Alignment:
| Q |
390 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatc |
453 |
Q |
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| T |
30413606 |
gctaaatcgtctctggctatacttgaaggtatttgttgacaaagctggaacgagaagtgacatc |
30413543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 288 - 369
Target Start/End: Original strand, 528170 - 528251
Alignment:
| Q |
288 |
catattatatcagtcagtcatggttaccgcatttaaaattctgccacaatgatgatactcagaaatatatgtgataaatgtc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
528170 |
catattatatcagtcagtcatggttaccgcatttaaaattctgccacaatgatgatactcagaaatatatgtgataaatgtc |
528251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 390 - 453
Target Start/End: Original strand, 528286 - 528349
Alignment:
| Q |
390 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatc |
453 |
Q |
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| T |
528286 |
gctaaatcgtctctggctatgcttgaaggtatttgttgacaaggctggaacgagaagtgacatc |
528349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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