View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17413_high_11 (Length: 382)
Name: NF17413_high_11
Description: NF17413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17413_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 5878647 - 5878463
Alignment:
| Q |
13 |
cttaagccatgagttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatataaaattcgtttgattg |
112 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
5878647 |
cttaagcgatgagttgtgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatgtaaatttcatttgattg |
5878548 |
T |
|
| Q |
113 |
aaactcttgatgttgaaccaaccactacaaaga-tttatttataacataatttttgttattttgtcgaccgactaataattgcaa |
196 |
Q |
| |
|
||||| | |||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| |||||||||| |
|
|
| T |
5878547 |
aaactttggatgttcaaccaaccactacaaagattttatttataacattatttttgttattttatcgaccgacttataattgcaa |
5878463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 255 - 373
Target Start/End: Complemental strand, 5878417 - 5878299
Alignment:
| Q |
255 |
ggtaccttcctgagaaactcatgggcttggttaacttgtatcaaatcgcttcgtttagcacccaattttgtggtggcataagtgaagcctgtggaaacag |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5878417 |
ggtaccttcctgagaaactcatgggcttggttaacttgtatcaaatcgcttcgtttagcaccagattctgtggtggcataagtgaagcctgtggaaacag |
5878318 |
T |
|
| Q |
355 |
gcaaatctgcaagtataat |
373 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
5878317 |
gcaaatctgcaaatataat |
5878299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 24 - 172
Target Start/End: Complemental strand, 5865392 - 5865244
Alignment:
| Q |
24 |
agttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatataaaattcgtttgattgaaactcttgat |
123 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||| |
|
|
| T |
5865392 |
agttttgtaccttctgcaattttttgaacaatgacaggaataggaatgccagagtatgaatcaccagcaatgtaaacttcgtttgattgaaactttggat |
5865293 |
T |
|
| Q |
124 |
gttgaaccaaccactacaaagatttatttataacataatttttgttatt |
172 |
Q |
| |
|
| | |||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5865292 |
gatcaaccaaccactacaaagatttatttatagcataatttttgttatt |
5865244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 5858707 - 5858562
Alignment:
| Q |
20 |
catgagttatgtaccttgtgcaatttcttgaacaattgccggaatagtaatgccagagtatgaatcaccagcaatataaaattcgtttgattgaaactct |
119 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| | |
|
|
| T |
5858707 |
catgaattttgtaccttgtgcaatttcttgaacaacgacaggaataggaatgccagagtatgaatcaccagcaatgtaaacttcgtttgattgaaacttt |
5858608 |
T |
|
| Q |
120 |
tgatgttgaaccaaccactacaaagatttatttataacataatttt |
165 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5858607 |
ggatgatcaaccaaccactacaaagatttatttataaaataatttt |
5858562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 373
Target Start/End: Complemental strand, 5865161 - 5865075
Alignment:
| Q |
287 |
aacttgtatcaaatcgcttcgtttagcacccaattttgtggtggcataagtgaagcctgtggaaacaggcaaatctgcaagtataat |
373 |
Q |
| |
|
|||| ||||| | |||||||| |||| ||| ||| ||| |||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
5865161 |
aactagtatcgagtcgcttcgcttagtaccggattctgttgtggcataagtgaagcctgtggaaaccggcaaatctacaaatataat |
5865075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 5858412 - 5858366
Alignment:
| Q |
327 |
gtggcataagtgaagcctgtggaaacaggcaaatctgcaagtataat |
373 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
5858412 |
gtggcataagtgaagcctgtggaaaccggcaaatctacaaatataat |
5858366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University